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root/group/trunk/OOPSE/libmdtools/InitializeFromFile.cpp
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Comparing trunk/OOPSE/libmdtools/InitializeFromFile.cpp (file contents):
Revision 874 by mmeineke, Fri Nov 21 20:10:02 2003 UTC vs.
Revision 911 by mmeineke, Thu Jan 8 18:13:30 2004 UTC

# Line 265 | Line 265 | void InitializeFromFile :: readInit( SimInfo* the_simn
265        }
266      }
267      myStatus = -1;
268 <    for (j = 0; j < mpiSim->getNumberProcessors(); j++) {
268 >    for (j = 1; j < mpiSim->getNumberProcessors(); j++) {
269        MPI_Send( &myStatus, 1, MPI_INT, j,
270                  TAKE_THIS_TAG_INT, MPI_COMM_WORLD);
271      }
# Line 587 | Line 587 | char* InitializeFromFile::parseCommentLine(char* readL
587    entry_plug->setBoxM( theBoxMat3 );
588  
589    //get chi and integralOfChidt, they should appear by pair
590 <  foo = strtok(NULL, " ,;\t\n");
591 <  if(foo != NULL){
592 <    chi = atof(foo);
593 <
590 >
591 >  if( entry_plug->useInitXSstate ){
592      foo = strtok(NULL, " ,;\t\n");
593 <    if(foo == NULL){
594 <      sprintf( painCave.errMsg,
595 <               "chi and integralOfChidt should appear by pair in %s\n", c_in_name );
596 <      return strdup( painCave.errMsg );
593 >    if(foo != NULL){
594 >      chi = atof(foo);
595 >      
596 >      foo = strtok(NULL, " ,;\t\n");
597 >      if(foo == NULL){
598 >        sprintf( painCave.errMsg,
599 >                 "chi and integralOfChidt should appear by pair in %s\n", c_in_name );
600 >        return strdup( painCave.errMsg );
601 >      }
602 >      integralOfChidt = atof( foo );
603 >      
604 >      //push chi and integralOfChidt into SimInfo::properties which can be
605 >      //retrieved by integrator later
606 >      DoubleData* chiValue = new DoubleData();
607 >      chiValue->setID(CHIVALUE_ID);
608 >      chiValue->setData(chi);
609 >      entry_plug->addProperty(chiValue);
610 >      
611 >      DoubleData* integralOfChidtValue = new DoubleData();
612 >      integralOfChidtValue->setID(INTEGRALOFCHIDT_ID);
613 >      integralOfChidtValue->setData(integralOfChidt);
614 >      entry_plug->addProperty(integralOfChidtValue);
615 >      
616      }
617 <    integralOfChidt = atof( foo );
618 <
619 <    //push chi and integralOfChidt into SimInfo::properties which can be
617 >    else
618 >      return NULL;
619 >    
620 >    //get eta
621 >    foo = strtok(NULL, " ,;\t\n");
622 >    if(foo != NULL ){
623 >  
624 >      for(int i = 0 ; i < 9; i++){
625 >        
626 >        if(foo == NULL){
627 >          sprintf( painCave.errMsg,
628 >                   "error in reading eta[%d] from %s\n", i, c_in_name );
629 >          return strdup( painCave.errMsg );
630 >        }
631 >        eta[i] = atof( foo );
632 >        foo = strtok(NULL, " ,;\t\n");
633 >      }
634 >    }
635 >    else
636 >      return NULL;
637 >    
638 >    //push eta into SimInfo::properties which can be
639      //retrieved by integrator later
640 <    DoubleData* chiValue = new DoubleData();
641 <    chiValue->setID(CHIVALUE_ID);
642 <    chiValue->setData(chi);
643 <    entry_plug->addProperty(chiValue);
644 <
609 <    DoubleData* integralOfChidtValue = new DoubleData();
610 <    integralOfChidtValue->setID(INTEGRALOFCHIDT_ID);
611 <    integralOfChidtValue->setData(integralOfChidt);
612 <    entry_plug->addProperty(integralOfChidtValue);
613 <
640 >    //entry_plug->setBoxM( theBoxMat3 );
641 >    DoubleArrayData* etaValue = new DoubleArrayData();
642 >    etaValue->setID(ETAVALUE_ID);
643 >    etaValue->setData(eta, 9);
644 >    entry_plug->addProperty(etaValue);
645    }
615 –  else
616 –    return NULL;
646  
618 –  //get eta
619 –  for(int i = 0 ; i < 9; i++){
620 –    foo = strtok(NULL, " ,;\t");
621 –    if(foo == NULL){
622 –      sprintf( painCave.errMsg,
623 –               "error in reading eta[%d] from %s\n", i, c_in_name );
624 –      return strdup( painCave.errMsg );
625 –    }
626 –    eta[i] = atof( foo );
627 –  }
628 –
629 –  //push eta into SimInfo::properties which can be
630 –  //retrieved by integrator later
631 –  //entry_plug->setBoxM( theBoxMat3 );
632 –  DoubleArrayData* etaValue = new DoubleArrayData();
633 –  etaValue->setID(ETAVALUE_ID);
634 –  etaValue->setData(eta, 9);
635 –  entry_plug->addProperty(etaValue);
636 –
637 –
647    return NULL;
648   }
649  

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