45 |
|
virtual void calcForce( int calcPot, int calcStress ); |
46 |
|
virtual void thermalize(); |
47 |
|
|
48 |
+ |
virtual bool stopIntegrator() {return false;} |
49 |
+ |
|
50 |
|
virtual void rotationPropagation( StuntDouble* sd, double ji[3] ); |
51 |
|
|
52 |
|
void checkConstraints( void ); |
87 |
|
|
88 |
|
typedef Integrator<BaseIntegrator> RealIntegrator; |
89 |
|
|
90 |
+ |
// ansi instantiation |
91 |
+ |
template class Integrator<BaseIntegrator>; |
92 |
+ |
|
93 |
|
template<typename T> class NVE : public T { |
94 |
|
|
95 |
|
public: |
460 |
|
vector<double> curZPos; |
461 |
|
|
462 |
|
bool usingSMD; |
463 |
+ |
vector<double> prevCantPos; |
464 |
|
vector<double> cantPos; |
465 |
|
vector<double> cantVel; |
466 |
|
|
490 |
|
}; |
491 |
|
|
492 |
|
/* |
493 |
< |
//Steered Molecular Dynamics |
493 |
> |
template<typename T> class SingleZConstrain : public T{ |
494 |
> |
|
495 |
> |
|
496 |
> |
}; |
497 |
> |
*/ |
498 |
> |
|
499 |
> |
template<typename T> class NonEquMD : public T { |
500 |
> |
public: |
501 |
> |
|
502 |
> |
|
503 |
> |
|
504 |
> |
}; |
505 |
> |
|
506 |
> |
|
507 |
> |
// |
508 |
> |
template<typename T> class SingleZConstraint : public T{ |
509 |
> |
public: |
510 |
> |
SingleZConstraint(SimInfo *theInfo, ForceFields* the_ff); |
511 |
> |
~SingleZConstraint(); |
512 |
> |
|
513 |
> |
bool stopIntegrator(); |
514 |
> |
|
515 |
> |
protected: |
516 |
> |
|
517 |
> |
}; |
518 |
> |
|
519 |
> |
//Steered Molecular Dynamics, curret implement only support one steered molecule |
520 |
|
template<typename T> class SMD : public T{ |
521 |
|
public: |
522 |
|
SMD( SimInfo *theInfo, ForceFields* the_ff); |
523 |
|
~SMD(); |
524 |
|
|
525 |
< |
virtual void integrate(); |
526 |
< |
virtual void calcForce( int calcPot, int calcStress ); |
525 |
> |
virtual void integrate(); |
526 |
> |
virtual void calcForce( int calcPot, int calcStress ); |
527 |
> |
bool stopIntegrator(); |
528 |
> |
private: |
529 |
> |
|
530 |
|
}; |
531 |
< |
*/ |
531 |
> |
|
532 |
> |
//By using state pattern, Coordinate Drive is responsible for switching back and forth between |
533 |
> |
//Driven Molecular Dynamics and ZConstraint Method. |
534 |
> |
template<typename T> class CoordinateDriver : public T { |
535 |
> |
public: |
536 |
> |
typedef T ParentIntegrator; |
537 |
> |
|
538 |
> |
CoordinateDriver(SimInfo*, ForceFields*, BaseIntegrator*, BaseIntegrator*); |
539 |
> |
~CoordinateDriver(); |
540 |
> |
|
541 |
> |
virtual void integrate(); |
542 |
> |
|
543 |
> |
private: |
544 |
> |
BaseIntegrator* zconsIntegrator; |
545 |
> |
BaseIntegrator* drivenIntegrator; |
546 |
> |
|
547 |
> |
}; |
548 |
> |
|
549 |
|
#endif |