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root/group/trunk/OOPSE/libmdtools/Make.dep
Revision: 1254
Committed: Wed Jun 9 16:16:33 2004 UTC (20 years, 3 months ago) by tim
File size: 69236 byte(s)
Log Message: 
1. adding some useful math classes(Mat3x3d, Vector3d, Quaternion, Euler3)
 these classes use anonymous union and struct to support
 double[3], double[3][3] and double[4]
2. adding roll constraint algorithm

File Contents

# User Rev Content
1 gezelter 747 # DO NOT DELETE THIS LINE - used by make depend
2 gezelter 1097 obj/mpiForceField$(O) : ./mpiForceField.c
3 tim 1119 obj/MatVec3$(O) : ./MatVec3.c ../libBASS/simError.h ./MatVec3.h
4 gezelter 1097 obj/Atom$(O) : ./Atom.cpp ../libBASS/simError.h ./Atom.hpp ./SimState.hpp \
5 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp
6 gezelter 1224 obj/AtomVisitor$(O) : ./AtomVisitor.cpp ./AtomVisitor.hpp ./BaseVisitor.hpp \
7     ./DirectionalAtom.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
8     ./SimState.hpp ./MatVec3.h ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
9     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp
10 gezelter 1097 obj/Bend$(O) : ./Bend.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
11 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
12 gezelter 1097 obj/BendExtensions$(O) : ./BendExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
13 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
14     ./AbstractClasses.hpp ../libBASS/simError.h
15 gezelter 1097 obj/Bond$(O) : ./Bond.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
16 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
17 gezelter 1097 obj/BondExtensions$(O) : ./BondExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
18 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
19     ./AbstractClasses.hpp
20 gezelter 1224 obj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
21     ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
22     ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
23     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
24     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
25     ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
26 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
27     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
28     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
29     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
30     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
31     ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
32 gezelter 1224 obj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
33     ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
34     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
35     ../libBASS/AtomStamp.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp
36 gezelter 1097 obj/DirectionalAtom$(O) : ./DirectionalAtom.cpp ./Atom.hpp ./SimState.hpp \
37 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
38     ../libBASS/simError.h ./MatVec3.h
39 gezelter 1224 obj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
40     ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
41     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
42 tim 1119 ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
43     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
44 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
45 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
46     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
47     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
48     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
49     ./fortranWrappers.hpp
50 gezelter 1097 obj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
51 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
52     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
53     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
54     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
55 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
56 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
57     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
58     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
59     ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
60     ../libBASS/simError.h
61 gezelter 1224 obj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
62     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
63     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
64 gezelter 1097 ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
65     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
66 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
67 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
68     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
69     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
70     ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
71     ../libBASS/simError.h
72 gezelter 1097 obj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
73 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
74     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
75     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
76     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
77 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
78 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
79     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
80     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
81     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
82     ./fortranWrappers.hpp
83 gezelter 1224 obj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
84     obj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
85     ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
86     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
87     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
88     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
89     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
90 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
91     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
92     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
93     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
94 gezelter 1224 obj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \
95     ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
96     ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
97     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
98     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
99     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
100     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
101 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
102     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
103     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h ./fForceField.h
104 gezelter 1224 obj/GenericData$(O) : ./GenericData.cpp ./GenericData.hpp
105     obj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
106     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
107     ./DirectionalAtom.hpp ./AbstractClasses.hpp
108     obj/InitializeFromFile$(O) : ./InitializeFromFile.cpp ./ReadWrite.hpp ./Atom.hpp \
109     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
110     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
111     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
112     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
113     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
114 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
115     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
116     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
117     ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
118     ../libBASS/simError.h
119     obj/Integrator$(O) : ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
120     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
121     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
122     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
123     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
124     ./SimState.hpp ./BaseVisitor.hpp ./Integrator.hpp ./Molecule.hpp ./SRI.hpp \
125 gezelter 1097 ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
126 tim 1234 ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
127     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./SimInfo.hpp ./Exclude.hpp \
128     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
129     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
130     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
131     ./ZConsWriter.hpp ../libBASS/simError.h
132 gezelter 1224 obj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
133 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
134     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
135     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
136     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
137 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
138 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
139     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
140     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
141     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
142     ./fortranWrappers.hpp
143 gezelter 1224 obj/mdProfile$(O) : ./mdProfile.cpp ./config.h ../libBASS/simError.h ./mdProfile.hpp
144 tim 1119 obj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
145     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
146     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
147     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
148     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
149 gezelter 1154 ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
150 tim 1234 ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp \
151     ../libBASS/simError.h
152 gezelter 1224 obj/mpiSimulation$(O) : ./mpiSimulation.cpp
153     obj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
154     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
155     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
156     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
157     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
158     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
159 tim 1234 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
160     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
161     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
162     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
163 gezelter 1224 ./ZConsWriter.hpp ../libBASS/simError.h
164 tim 1119 obj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
165     ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
166     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
167 gezelter 1097 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
168     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
169     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
170 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
171     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
172     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
173     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
174     ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
175 gezelter 1154 ./ZConsWriter.hpp ../libBASS/simError.h
176 tim 1119 obj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
177     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
178     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
179     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
180     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
181 tim 1158 ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
182 tim 1234 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
183     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
184     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
185     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
186 gezelter 1199 ./ZConsWriter.hpp ../libBASS/simError.h
187 gezelter 1097 obj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
188 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
189     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
190 gezelter 1097 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
191     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
192     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
193 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
194     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
195     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
196     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
197     ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
198 gezelter 1154 ./ZConsWriter.hpp ../libBASS/simError.h
199 tim 1119 obj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
200     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
201     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
202     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
203     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
204 tim 1158 ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
205 tim 1234 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
206     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
207     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
208     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
209 gezelter 1199 ./ZConsWriter.hpp ../libBASS/simError.h
210 gezelter 1097 obj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp \
211 tim 1119 ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
212     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
213 gezelter 1097 ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
214     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
215 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
216 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
217     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
218     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
219     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
220     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
221     ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./ShakeMin.hpp \
222     ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
223     ./ConstraintIterator.hpp
224 gezelter 1224 obj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
225     ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
226     ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
227     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
228     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
229     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
230 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
231     ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
232     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
233     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
234 tim 1119 obj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
235     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
236     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
237     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
238     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
239 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
240 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
241     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
242     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
243     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
244     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
245     ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
246 gezelter 1224 obj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
247     obj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
248     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
249     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
250     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
251     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
252     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
253 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
254     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
255     ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
256     ./fSimulation.h ../libBASS/simError.h
257 gezelter 1224 obj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
258     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
259     ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp \
260     ./BaseVisitor.hpp ../libBASS/simError.h ./MatVec3.h
261     obj/RigidBodyVisitor$(O) : ./RigidBodyVisitor.cpp ./RigidBodyVisitor.hpp \
262     ./BaseVisitor.hpp ./GenericData.hpp ./RigidBody.hpp \
263     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
264     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./MatVec3.h
265 gezelter 1097 obj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
266 tim 1119 ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
267     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
268     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
269 gezelter 1097 ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
270 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
271 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
272     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
273     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
274     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
275     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
276     ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
277 gezelter 1224 obj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.hpp ./SimState.hpp \
278     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./RigidBody.hpp \
279     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
280     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
281     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
282     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
283 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
284     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
285     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
286     ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h ../libBASS/simError.h \
287     ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h ./MatVec3.h \
288     ./ConstraintManager.hpp ./ConstraintIterator.hpp
289 gezelter 1224 obj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \
290     ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
291     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
292     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
293     ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp \
294     ../libBASS/Globals.hpp ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp \
295     ../libBASS/ZconStamp.hpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
296     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
297     ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
298 tim 1234 ./AbstractClasses.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
299     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ./Restraints.hpp \
300     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
301     ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp \
302     ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
303     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp ./Integrator.hpp \
304     ./ZConsWriter.hpp ../libBASS/simError.h ./NVT.cpp ../libBASS/simError.h \
305     ./NPTf.cpp ./MatVec3.h ../libBASS/simError.h ./NPT.cpp ../libBASS/simError.h \
306     ./NPTi.cpp ../libBASS/simError.h ./NPTxyz.cpp ../libBASS/simError.h \
307     ./ZConstraint.cpp ../libBASS/simError.h ../libBASS/parse_me.h \
308     ../libBASS/simError.h ./OOPSEMinimizer.hpp ./MinimizerParameterSet.hpp \
309     ./ConstraintManager.hpp
310 gezelter 1224 obj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp
311     obj/SkipList$(O) : ./SkipList.cpp ./SkipList.hpp
312     obj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
313     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
314     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
315     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
316     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
317     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
318 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
319     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
320     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
321     ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
322     ../libBASS/simError.h
323 gezelter 1224 obj/StreamTokenizer$(O) : ./StreamTokenizer.cpp ./StreamTokenizer.hpp
324     obj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
325     ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./RigidBody.hpp \
326     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
327     ../libBASS/AtomStamp.hpp ../libBASS/simError.h
328     obj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
329     ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
330     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
331     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
332     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
333     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
334 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
335     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
336     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
337     ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp \
338     ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp \
339     ../libBASS/simError.h ./MatVec3.h
340 gezelter 1224 obj/Torsion$(O) : ./Torsion.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
341     ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
342     obj/TorsionExtensions$(O) : ./TorsionExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
343     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
344     ./AbstractClasses.hpp
345     obj/Utility$(O) : ./Utility.cpp ./Utility.hpp
346     obj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
347     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
348     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
349     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
350     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
351     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
352 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
353     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
354     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
355     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
356     ./fortranWrappers.hpp
357 gezelter 1097 obj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
358 tim 1119 ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
359     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
360     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
361     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
362 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
363 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
364     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
365     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
366     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
367     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
368     ./ZConsWriter.hpp ../libBASS/simError.h
369 gezelter 1224 obj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \
370     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp \
371     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
372     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
373 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
374 gezelter 1224 ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
375 tim 1234 ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp \
376     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
377     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
378     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
379     ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
380 gezelter 1224 ../libBASS/simError.h
381 tim 1119 obj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVisitor.hpp ./BaseVisitor.hpp \
382     ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
383     ./GenericData.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
384 gezelter 1097 ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
385     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
386 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
387 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
388     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
389     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
390     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
391     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
392     ./ZConsWriter.hpp
393     obj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
394     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
395     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
396     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
397     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
398     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
399     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
400     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
401     ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
402     ./fSimulation.h ../libBASS/simError.h
403     obj/ConstraintManager$(O) : ./ConstraintManager.cpp ./ConstraintManager.hpp \
404     ./Molecule.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
405     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
406     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
407     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
408     ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
409     ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
410     ./ConstraintPair.hpp ./ConstraintElement.hpp ./ConstraintIterator.hpp \
411     ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
412     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
413     ./fortranWrapDefines.hpp ./fSimulation.h
414     obj/ConstraintAlgorithm$(O) : ./ConstraintAlgorithm.cpp ./ConstraintAlgorithm.hpp \
415     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
416     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
417     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
418     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
419     ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
420     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
421     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
422     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
423     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
424 tim 1254 ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ConstraintManager.hpp \
425     ../libBASS/simError.h
426 tim 1234 obj/Shake$(O) : ./Shake.cpp ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp \
427     ./TypeInfo.hpp ./ConstraintIterator.hpp ./ConstraintPair.hpp \
428     ./ConstraintElement.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
429     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
430     ./GenericData.hpp ./Atom.hpp ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
431     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
432     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
433     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
434 tim 1158 ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
435 gezelter 1199 ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
436 tim 1254 ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h ./MatVec3.h
437 tim 1234 obj/Rattle$(O) : ./Rattle.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
438     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
439     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
440     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
441     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
442     ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
443     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
444     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
445     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
446     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
447 tim 1254 ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./MatVec3.h
448     obj/ShakeMin$(O) : ./ShakeMin.cpp ./ConstraintElement.hpp ./RigidBody.hpp \
449 tim 1234 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
450     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
451 tim 1254 ./SimState.hpp ./BaseVisitor.hpp ./ShakeMin.hpp ./ConstraintAlgorithm.hpp \
452     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
453     ./ConstraintPair.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
454     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
455     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
456     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
457     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
458     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
459 tim 1234 obj/CallbackFunctor$(O) : ./CallbackFunctor.cpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
460     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
461     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
462     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
463     ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
464     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
465     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
466     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
467     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
468     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
469     obj/ConstraintElement$(O) : ./ConstraintElement.cpp ./ConstraintElement.hpp \
470     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
471     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
472     ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp
473 gezelter 1224 obj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \
474     ../libBASS/simError.h
475 tim 1254 obj/Vector3d$(O) : ./Vector3d.cpp ./Vector3d.hpp ./Mat3x3d.hpp
476     obj/Quaternion$(O) : ./Quaternion.cpp ./Euler3.hpp ./Vector3d.hpp ./Mat3x3d.hpp \
477     ./Quaternion.hpp
478     obj/Mat3x3d$(O) : ./Mat3x3d.cpp ./Mat3x3d.hpp ./Vector3d.hpp ./Quaternion.hpp \
479     ./Euler3.hpp
480     obj/Euler3$(O) : ./Euler3.cpp ./Euler3.hpp ./Mat3x3d.hpp ./Quaternion.hpp ./Vector3d.hpp
481     obj/Roll$(O) : ./Roll.cpp ./Mat3x3d.hpp ./Roll.hpp ./Rattle.hpp ./Shake.hpp \
482     ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
483     ./ConstraintIterator.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp \
484     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
485     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
486     ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
487     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
488     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
489     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
490     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
491     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
492     ./fortranWrapDefines.hpp ./fSimulation.h
493 gezelter 1097 MPIobj/mpiForceField$(O) : ./mpiForceField.c
494 tim 1119 MPIobj/MatVec3$(O) : ./MatVec3.c ../libBASS/simError.h ./MatVec3.h
495 gezelter 1097 MPIobj/Atom$(O) : ./Atom.cpp ../libBASS/simError.h ./Atom.hpp ./SimState.hpp \
496 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp
497 gezelter 1224 MPIobj/AtomVisitor$(O) : ./AtomVisitor.cpp ./AtomVisitor.hpp ./BaseVisitor.hpp \
498     ./DirectionalAtom.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
499     ./SimState.hpp ./MatVec3.h ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
500     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp
501 gezelter 1097 MPIobj/Bend$(O) : ./Bend.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
502 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
503 gezelter 1097 MPIobj/BendExtensions$(O) : ./BendExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
504 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
505     ./AbstractClasses.hpp ../libBASS/simError.h
506 gezelter 1097 MPIobj/Bond$(O) : ./Bond.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
507 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
508 gezelter 1097 MPIobj/BondExtensions$(O) : ./BondExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
509 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
510     ./AbstractClasses.hpp
511 gezelter 1224 MPIobj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
512     ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
513     ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
514     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
515     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
516     ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
517 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
518     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
519     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
520     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
521     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
522     ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
523 gezelter 1224 MPIobj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
524     ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
525     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
526     ../libBASS/AtomStamp.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp
527 gezelter 1097 MPIobj/DirectionalAtom$(O) : ./DirectionalAtom.cpp ./Atom.hpp ./SimState.hpp \
528 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
529     ../libBASS/simError.h ./MatVec3.h
530 gezelter 1224 MPIobj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
531     ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
532     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
533 tim 1119 ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
534     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
535 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
536 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
537     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
538     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
539     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
540     ./fortranWrappers.hpp
541 gezelter 1097 MPIobj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
542 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
543     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
544     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
545     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
546 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
547 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
548     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
549     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
550     ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
551     ../libBASS/simError.h
552 gezelter 1224 MPIobj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
553     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
554     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
555 gezelter 1097 ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
556     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
557 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
558 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
559     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
560     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
561     ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
562     ../libBASS/simError.h
563 gezelter 1097 MPIobj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
564 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
565     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
566     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
567     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
568 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
569 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
570     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
571     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
572     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
573     ./fortranWrappers.hpp
574 gezelter 1224 MPIobj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
575     MPIobj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
576     ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
577     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
578     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
579     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
580     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
581 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
582     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
583     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
584     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
585 gezelter 1224 MPIobj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \
586     ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
587     ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
588     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
589     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
590     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
591     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
592 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
593     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
594     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h ./fForceField.h
595 gezelter 1224 MPIobj/GenericData$(O) : ./GenericData.cpp ./GenericData.hpp
596     MPIobj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
597     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
598     ./DirectionalAtom.hpp ./AbstractClasses.hpp
599     MPIobj/InitializeFromFile$(O) : ./InitializeFromFile.cpp ./ReadWrite.hpp ./Atom.hpp \
600     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
601     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
602     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
603     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
604     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
605 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
606     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
607     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
608     ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
609     ../libBASS/simError.h
610     MPIobj/Integrator$(O) : ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
611     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
612     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
613     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
614     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
615     ./SimState.hpp ./BaseVisitor.hpp ./Integrator.hpp ./Molecule.hpp ./SRI.hpp \
616 gezelter 1097 ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
617 tim 1234 ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
618     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./SimInfo.hpp ./Exclude.hpp \
619     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
620     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
621     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
622     ./ZConsWriter.hpp ../libBASS/simError.h
623 gezelter 1224 MPIobj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
624 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
625     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
626     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
627     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
628 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
629 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
630     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
631     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
632     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
633     ./fortranWrappers.hpp
634 gezelter 1224 MPIobj/mdProfile$(O) : ./mdProfile.cpp ./config.h ../libBASS/simError.h ./mdProfile.hpp
635 tim 1119 MPIobj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
636     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
637     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
638     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
639     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
640 gezelter 1154 ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
641 tim 1234 ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp \
642     ../libBASS/simError.h
643 gezelter 1224 MPIobj/mpiSimulation$(O) : ./mpiSimulation.cpp
644     MPIobj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
645     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
646     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
647     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
648     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
649     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
650 tim 1234 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
651     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
652     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
653     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
654 gezelter 1224 ./ZConsWriter.hpp ../libBASS/simError.h
655 tim 1119 MPIobj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
656     ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
657     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
658 gezelter 1097 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
659     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
660     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
661 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
662     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
663     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
664     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
665     ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
666 gezelter 1154 ./ZConsWriter.hpp ../libBASS/simError.h
667 tim 1119 MPIobj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
668     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
669     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
670     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
671     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
672 tim 1158 ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
673 tim 1234 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
674     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
675     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
676     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
677 gezelter 1199 ./ZConsWriter.hpp ../libBASS/simError.h
678 gezelter 1097 MPIobj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
679 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
680     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
681 gezelter 1097 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
682     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
683     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
684 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
685     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
686     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
687     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
688     ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
689 gezelter 1154 ./ZConsWriter.hpp ../libBASS/simError.h
690 tim 1119 MPIobj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
691     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
692     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
693     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
694     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
695 tim 1158 ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
696 tim 1234 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp \
697     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
698     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
699     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
700 gezelter 1199 ./ZConsWriter.hpp ../libBASS/simError.h
701 gezelter 1097 MPIobj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp \
702 tim 1119 ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
703     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
704 gezelter 1097 ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
705     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
706 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
707 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
708     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
709     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
710     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
711     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
712     ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./ShakeMin.hpp \
713     ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
714     ./ConstraintIterator.hpp
715 gezelter 1224 MPIobj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
716     ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
717     ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
718     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
719     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
720     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
721 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
722     ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
723     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
724     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
725 tim 1119 MPIobj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
726     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
727     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
728     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
729     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
730 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
731 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
732     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
733     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
734     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
735     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
736     ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
737 gezelter 1224 MPIobj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
738     MPIobj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
739     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
740     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
741     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
742     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
743     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
744 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
745     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
746     ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
747     ./fSimulation.h ../libBASS/simError.h
748 gezelter 1224 MPIobj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
749     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
750     ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp \
751     ./BaseVisitor.hpp ../libBASS/simError.h ./MatVec3.h
752     MPIobj/RigidBodyVisitor$(O) : ./RigidBodyVisitor.cpp ./RigidBodyVisitor.hpp \
753     ./BaseVisitor.hpp ./GenericData.hpp ./RigidBody.hpp \
754     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
755     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./MatVec3.h
756 gezelter 1097 MPIobj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
757 tim 1119 ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
758     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
759     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
760 gezelter 1097 ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
761 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
762 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
763     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
764     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
765     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
766     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
767     ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
768 gezelter 1224 MPIobj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.hpp ./SimState.hpp \
769     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./RigidBody.hpp \
770     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
771     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
772     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
773     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
774 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
775     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
776     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
777     ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h ../libBASS/simError.h \
778     ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h ./MatVec3.h \
779     ./ConstraintManager.hpp ./ConstraintIterator.hpp
780 gezelter 1224 MPIobj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \
781     ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
782     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
783     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
784     ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp \
785     ../libBASS/Globals.hpp ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp \
786     ../libBASS/ZconStamp.hpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
787     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
788     ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
789 tim 1234 ./AbstractClasses.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
790     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ./Restraints.hpp \
791     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
792     ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp \
793     ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
794     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp ./Integrator.hpp \
795     ./ZConsWriter.hpp ../libBASS/simError.h ./NVT.cpp ../libBASS/simError.h \
796     ./NPTf.cpp ./MatVec3.h ../libBASS/simError.h ./NPT.cpp ../libBASS/simError.h \
797     ./NPTi.cpp ../libBASS/simError.h ./NPTxyz.cpp ../libBASS/simError.h \
798     ./ZConstraint.cpp ../libBASS/simError.h ../libBASS/parse_me.h \
799     ../libBASS/simError.h ./OOPSEMinimizer.hpp ./MinimizerParameterSet.hpp \
800     ./ConstraintManager.hpp
801 gezelter 1224 MPIobj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp
802     MPIobj/SkipList$(O) : ./SkipList.cpp ./SkipList.hpp
803     MPIobj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
804     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
805     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
806     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
807     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
808     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
809 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
810     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
811     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
812     ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
813     ../libBASS/simError.h
814 gezelter 1224 MPIobj/StreamTokenizer$(O) : ./StreamTokenizer.cpp ./StreamTokenizer.hpp
815     MPIobj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
816     ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./RigidBody.hpp \
817     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
818     ../libBASS/AtomStamp.hpp ../libBASS/simError.h
819     MPIobj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
820     ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
821     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
822     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
823     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
824     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
825 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
826     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
827     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
828     ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp \
829     ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp \
830     ../libBASS/simError.h ./MatVec3.h
831 gezelter 1224 MPIobj/Torsion$(O) : ./Torsion.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
832     ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
833     MPIobj/TorsionExtensions$(O) : ./TorsionExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
834     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
835     ./AbstractClasses.hpp
836     MPIobj/Utility$(O) : ./Utility.cpp ./Utility.hpp
837     MPIobj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
838     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
839     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
840     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
841     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
842     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
843 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
844     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
845     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
846     ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
847     ./fortranWrappers.hpp
848 gezelter 1097 MPIobj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
849 tim 1119 ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
850     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
851     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
852     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
853 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
854 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
855     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
856     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
857     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
858     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
859     ./ZConsWriter.hpp ../libBASS/simError.h
860 gezelter 1224 MPIobj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \
861     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp \
862     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
863     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
864 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
865 gezelter 1224 ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
866 tim 1234 ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp \
867     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
868     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
869     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
870     ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
871 gezelter 1224 ../libBASS/simError.h
872 tim 1119 MPIobj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVisitor.hpp ./BaseVisitor.hpp \
873     ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
874     ./GenericData.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
875 gezelter 1097 ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
876     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
877 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
878 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
879     ./ConstraintPair.hpp ./ConstraintElement.hpp ./SimInfo.hpp ./Exclude.hpp \
880     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
881     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
882     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp \
883     ./ZConsWriter.hpp
884     MPIobj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
885     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
886     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
887     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
888     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
889     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
890     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
891     ./ConstraintElement.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
892     ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
893     ./fSimulation.h ../libBASS/simError.h
894     MPIobj/ConstraintManager$(O) : ./ConstraintManager.cpp ./ConstraintManager.hpp \
895     ./Molecule.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
896     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
897     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
898     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
899     ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
900     ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
901     ./ConstraintPair.hpp ./ConstraintElement.hpp ./ConstraintIterator.hpp \
902     ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
903     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
904     ./fortranWrapDefines.hpp ./fSimulation.h
905     MPIobj/ConstraintAlgorithm$(O) : ./ConstraintAlgorithm.cpp ./ConstraintAlgorithm.hpp \
906     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
907     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
908     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
909     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
910     ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
911     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
912     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
913     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
914     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
915 tim 1254 ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ConstraintManager.hpp \
916     ../libBASS/simError.h
917 tim 1234 MPIobj/Shake$(O) : ./Shake.cpp ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp \
918     ./TypeInfo.hpp ./ConstraintIterator.hpp ./ConstraintPair.hpp \
919     ./ConstraintElement.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
920     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
921     ./GenericData.hpp ./Atom.hpp ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
922     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
923     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
924     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
925 tim 1158 ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
926 gezelter 1199 ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
927 tim 1254 ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h ./MatVec3.h
928 tim 1234 MPIobj/Rattle$(O) : ./Rattle.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
929     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
930     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
931     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
932     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
933     ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
934     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
935     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
936     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
937     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
938 tim 1254 ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./MatVec3.h
939     MPIobj/ShakeMin$(O) : ./ShakeMin.cpp ./ConstraintElement.hpp ./RigidBody.hpp \
940 tim 1234 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
941     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
942 tim 1254 ./SimState.hpp ./BaseVisitor.hpp ./ShakeMin.hpp ./ConstraintAlgorithm.hpp \
943     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
944     ./ConstraintPair.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
945     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
946     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
947     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
948     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
949     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
950 tim 1234 MPIobj/CallbackFunctor$(O) : ./CallbackFunctor.cpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
951     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
952     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
953     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
954     ./SimState.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \
955     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
956     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
957     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
958     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
959     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
960     MPIobj/ConstraintElement$(O) : ./ConstraintElement.cpp ./ConstraintElement.hpp \
961     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
962     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
963     ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp
964 gezelter 1224 MPIobj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \
965     ../libBASS/simError.h
966 tim 1254 MPIobj/Vector3d$(O) : ./Vector3d.cpp ./Vector3d.hpp ./Mat3x3d.hpp
967     MPIobj/Quaternion$(O) : ./Quaternion.cpp ./Euler3.hpp ./Vector3d.hpp ./Mat3x3d.hpp \
968     ./Quaternion.hpp
969     MPIobj/Mat3x3d$(O) : ./Mat3x3d.cpp ./Mat3x3d.hpp ./Vector3d.hpp ./Quaternion.hpp \
970     ./Euler3.hpp
971     MPIobj/Euler3$(O) : ./Euler3.cpp ./Euler3.hpp ./Mat3x3d.hpp ./Quaternion.hpp ./Vector3d.hpp
972     MPIobj/Roll$(O) : ./Roll.cpp ./Mat3x3d.hpp ./Roll.hpp ./Rattle.hpp ./Shake.hpp \
973     ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
974     ./ConstraintIterator.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp \
975     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
976     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
977     ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
978     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
979     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
980     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
981     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
982     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
983     ./fortranWrapDefines.hpp ./fSimulation.h