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root/group/trunk/OOPSE/libmdtools/Make.dep
Revision: 1452
Committed: Mon Aug 23 15:11:36 2004 UTC (20 years ago) by tim
File size: 71517 byte(s)
Log Message: 
*** empty log message ***

File Contents

# User Rev Content
1 gezelter 747 # DO NOT DELETE THIS LINE - used by make depend
2 gezelter 1097 obj/mpiForceField$(O) : ./mpiForceField.c
3 tim 1119 obj/MatVec3$(O) : ./MatVec3.c ../libBASS/simError.h ./MatVec3.h
4 gezelter 1097 obj/Atom$(O) : ./Atom.cpp ../libBASS/simError.h ./Atom.hpp ./SimState.hpp \
5 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp
6 gezelter 1224 obj/AtomVisitor$(O) : ./AtomVisitor.cpp ./AtomVisitor.hpp ./BaseVisitor.hpp \
7     ./DirectionalAtom.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
8     ./SimState.hpp ./MatVec3.h ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
9     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp
10 gezelter 1097 obj/Bend$(O) : ./Bend.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
11 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
12 gezelter 1097 obj/BendExtensions$(O) : ./BendExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
13 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
14     ./AbstractClasses.hpp ../libBASS/simError.h
15 gezelter 1097 obj/Bond$(O) : ./Bond.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
16 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
17 gezelter 1097 obj/BondExtensions$(O) : ./BondExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
18 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
19     ./AbstractClasses.hpp
20 gezelter 1269 obj/CallbackFunctor$(O) : ./CallbackFunctor.cpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
21     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
22     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
23     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
24 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
25     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
26     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
27     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
28     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
29     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
30     ./fortranWrapDefines.hpp ./fSimulation.h
31 gezelter 1224 obj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
32     ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
33     ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
34     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
35     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
36     ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
37 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
38 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
39     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
40     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
41     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
42     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
43     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
44     ./MinimizerParameterSet.hpp ./Utility.hpp
45 gezelter 1224 obj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
46     ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
47     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
48     ../libBASS/AtomStamp.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp
49 gezelter 1269 obj/ConstraintAlgorithm$(O) : ./ConstraintAlgorithm.cpp ./ConstraintAlgorithm.hpp \
50     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
51     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
52     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
53     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
54 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
55     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
56     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
57     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
58     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
59     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
60     ./fortranWrapDefines.hpp ./fSimulation.h ./ConstraintManager.hpp \
61 gezelter 1269 ../libBASS/simError.h
62     obj/ConstraintElement$(O) : ./ConstraintElement.cpp ./ConstraintElement.hpp \
63     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
64     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
65 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./DirectionalAtom.hpp
66 gezelter 1269 obj/ConstraintManager$(O) : ./ConstraintManager.cpp ./ConstraintManager.hpp \
67     ./Molecule.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
68     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
69     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
70     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
71     ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
72     ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
73 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
74     ./ConstraintIterator.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
75     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
76     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
77 gezelter 1097 obj/DirectionalAtom$(O) : ./DirectionalAtom.cpp ./Atom.hpp ./SimState.hpp \
78 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
79     ../libBASS/simError.h ./MatVec3.h
80 gezelter 1224 obj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
81     ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
82     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
83 tim 1119 ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
84     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
85 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
86 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
87 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
88     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
89     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
90     ../libBASS/simError.h ./fortranWrappers.hpp
91 gezelter 1097 obj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
92 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
93     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
94     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
95     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
96 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
97 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
98 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
99     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
100     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
101     ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
102 gezelter 1224 obj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
103     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
104     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
105 gezelter 1097 ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
106     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
107 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
108 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
109 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
110     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
111     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
112     ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
113 gezelter 1097 obj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
114 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
115     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
116     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
117     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
118 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
119 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
120 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
121     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
122     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
123     ../libBASS/simError.h ./fortranWrappers.hpp
124     obj/Euler3$(O) : ./Euler3.cpp ./Euler3.hpp ./Mat3x3d.hpp ./Quaternion.hpp ./Vector4d.hpp \
125     ./Vector3d.hpp
126 gezelter 1224 obj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
127     obj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
128     ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
129     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
130     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
131     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
132     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
133 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
134 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
135     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
136     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
137     ./fortranWrappers.hpp
138 gezelter 1224 obj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \
139     ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
140     ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
141     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
142     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
143     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
144     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
145 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
146 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
147     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
148     ./fSimulation.h ./fForceField.h
149 gezelter 1224 obj/GenericData$(O) : ./GenericData.cpp ./GenericData.hpp
150     obj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
151     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
152     ./DirectionalAtom.hpp ./AbstractClasses.hpp
153     obj/InitializeFromFile$(O) : ./InitializeFromFile.cpp ./ReadWrite.hpp ./Atom.hpp \
154     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
155     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
156     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
157     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
158     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
159 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
160 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
161     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
162     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
163     ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
164 tim 1234 obj/Integrator$(O) : ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
165     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
166     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
167     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
168     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
169 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./Roll.hpp ./Integrator.hpp \
170 tim 1268 ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
171     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
172     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
173     ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
174     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
175     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
176     ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
177 tim 1452 ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
178 gezelter 1224 obj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
179 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
180     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
181     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
182     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
183 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
184 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
185 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
186     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
187     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
188     ../libBASS/simError.h ./fortranWrappers.hpp
189 gezelter 1269 obj/Mat3x3d$(O) : ./Mat3x3d.cpp ./Mat3x3d.hpp ./Vector3d.hpp ./Quaternion.hpp \
190 tim 1452 ./Vector4d.hpp ./Euler3.hpp
191 gezelter 1224 obj/mdProfile$(O) : ./mdProfile.cpp ./config.h ../libBASS/simError.h ./mdProfile.hpp
192 tim 1119 obj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
193     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
194     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
195     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
196     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
197 gezelter 1154 ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
198 tim 1452 ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
199 tim 1234 ../libBASS/simError.h
200 gezelter 1224 obj/mpiSimulation$(O) : ./mpiSimulation.cpp
201     obj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
202     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
203     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
204     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
205     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
206     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
207 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
208     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
209     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
210     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
211     ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
212     ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
213 tim 1119 obj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
214     ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
215     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
216 gezelter 1097 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
217     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
218     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
219 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
220 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
221     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
222     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
223     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp \
224     ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp \
225     ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
226 tim 1119 obj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
227     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
228     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
229     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
230     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
231 tim 1158 ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
232 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
233     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
234     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
235     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
236     ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
237     ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
238 gezelter 1097 obj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
239 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
240     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
241 gezelter 1097 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
242     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
243     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
244 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
245 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
246     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
247     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
248     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp \
249     ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp \
250     ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
251 tim 1119 obj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
252     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
253     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
254     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
255     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
256 tim 1158 ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
257 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
258     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
259     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
260     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
261     ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
262     ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
263 gezelter 1097 obj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp \
264 tim 1119 ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
265     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
266 gezelter 1097 ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
267     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
268 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
269 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
270 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
271     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
272     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
273     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
274     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
275     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
276     ./MinimizerParameterSet.hpp ./ShakeMin.hpp ./ConstraintAlgorithm.hpp \
277     ./CallbackFunctor.hpp ./TypeInfo.hpp
278 gezelter 1224 obj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
279     ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
280     ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
281     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
282     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
283     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
284 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
285 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp ./Exclude.hpp \
286     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
287     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
288 tim 1119 obj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
289     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
290     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
291     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
292     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
293 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
294 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
295 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
296     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
297     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
298     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
299     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
300     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
301     ./MinimizerParameterSet.hpp ./Utility.hpp
302 gezelter 1269 obj/Quaternion$(O) : ./Quaternion.cpp ./Euler3.hpp ./Vector3d.hpp ./Mat3x3d.hpp \
303 tim 1452 ./Quaternion.hpp ./Vector4d.hpp
304 gezelter 1224 obj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
305 gezelter 1269 obj/Rattle$(O) : ./Rattle.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
306     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
307     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
308     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
309     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
310 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
311     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
312     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
313     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
314     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
315     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
316     ./fortranWrapDefines.hpp ./fSimulation.h ./MatVec3.h
317 gezelter 1224 obj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
318     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
319     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
320     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
321     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
322     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
323 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
324 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
325     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
326     ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h
327 gezelter 1224 obj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
328     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
329     ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp \
330     ./BaseVisitor.hpp ../libBASS/simError.h ./MatVec3.h
331     obj/RigidBodyVisitor$(O) : ./RigidBodyVisitor.cpp ./RigidBodyVisitor.hpp \
332     ./BaseVisitor.hpp ./GenericData.hpp ./RigidBody.hpp \
333     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
334     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./MatVec3.h
335 gezelter 1269 obj/Roll$(O) : ./Roll.cpp ./Mat3x3d.hpp ./Roll.hpp ./Rattle.hpp ./Shake.hpp \
336     ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
337     ./ConstraintIterator.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp \
338     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
339     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
340     ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
341     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
342     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
343     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
344     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
345     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
346     ./fortranWrapDefines.hpp ./fSimulation.h
347 gezelter 1097 obj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
348 tim 1119 ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
349     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
350     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
351 gezelter 1097 ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
352 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
353 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
354 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
355     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
356     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
357     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
358     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
359     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
360     ./MinimizerParameterSet.hpp ./Utility.hpp
361 gezelter 1269 obj/Shake$(O) : ./Shake.cpp ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp \
362     ./TypeInfo.hpp ./ConstraintIterator.hpp ./ConstraintPair.hpp \
363     ./ConstraintElement.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
364     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
365 tim 1452 ./GenericData.hpp ./Atom.hpp ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp \
366     ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
367     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
368     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
369     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
370     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
371     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h \
372     ./MatVec3.h
373     obj/ShakeMin$(O) : ./ShakeMin.cpp ./ConstraintElement.hpp ./RigidBody.hpp \
374     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
375     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
376     ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./ShakeMin.hpp \
377     ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
378     ./ConstraintIterator.hpp ./ConstraintPair.hpp ./SimInfo.hpp ./Molecule.hpp \
379     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
380 gezelter 1269 ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
381     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
382     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
383     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
384 tim 1452 ./fortranWrapDefines.hpp ./fSimulation.h
385 gezelter 1224 obj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.hpp ./SimState.hpp \
386     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./RigidBody.hpp \
387     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
388     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
389     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
390     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
391 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
392 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
393     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
394     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h \
395     ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h \
396     ./MatVec3.h ./ConstraintManager.hpp ./ConstraintIterator.hpp
397 gezelter 1224 obj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \
398     ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
399     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
400     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
401     ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp \
402     ../libBASS/Globals.hpp ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp \
403     ../libBASS/ZconStamp.hpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
404     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
405     ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
406 tim 1234 ./AbstractClasses.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
407 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
408     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
409     ./fForceField.h ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp \
410     ./ConstraintIterator.hpp ./AllIntegrator.hpp ./Integrator.cpp ./Rattle.hpp \
411     ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
412     ./Roll.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp \
413     ./Mat4x4d.hpp ../libBASS/simError.h ./NVT.cpp ../libBASS/simError.h ./NPTf.cpp \
414     ./MatVec3.h ../libBASS/simError.h ./NPT.cpp ../libBASS/simError.h ./NPTi.cpp \
415     ../libBASS/simError.h ./NPTxyz.cpp ../libBASS/simError.h ./ZConstraint.cpp \
416     ../libBASS/simError.h ./SQSIntegrator.cpp ./Mat3x3d.hpp ../libBASS/parse_me.h \
417     ../libBASS/simError.h ./OOPSEMinimizer.hpp ./MinimizerParameterSet.hpp \
418     ./ConstraintManager.hpp
419 gezelter 1224 obj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp
420     obj/SkipList$(O) : ./SkipList.cpp ./SkipList.hpp
421     obj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
422     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
423     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
424     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
425     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
426     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
427 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
428 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
429     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
430     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
431     ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
432 gezelter 1224 obj/StreamTokenizer$(O) : ./StreamTokenizer.cpp ./StreamTokenizer.hpp
433     obj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
434     ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./RigidBody.hpp \
435     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
436     ../libBASS/AtomStamp.hpp ../libBASS/simError.h
437     obj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
438     ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
439     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
440     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
441     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
442     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
443 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
444 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
445     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
446     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp \
447     ./ConstraintIterator.hpp ./Integrator.hpp ./ForceFields.hpp ./fForceField.h \
448     ./ReadWrite.hpp ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
449     ../libBASS/simError.h ./MatVec3.h ./ConstraintManager.hpp ./Mat3x3d.hpp
450 gezelter 1224 obj/Torsion$(O) : ./Torsion.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
451     ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
452     obj/TorsionExtensions$(O) : ./TorsionExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
453     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
454     ./AbstractClasses.hpp
455     obj/Utility$(O) : ./Utility.cpp ./Utility.hpp
456 gezelter 1269 obj/Vector3d$(O) : ./Vector3d.cpp ./Vector3d.hpp ./Mat3x3d.hpp
457 gezelter 1224 obj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
458     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
459     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
460     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
461     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
462     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
463 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
464 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
465     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
466     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
467     ../libBASS/simError.h ./fortranWrappers.hpp
468 gezelter 1097 obj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
469 tim 1119 ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
470     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
471     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
472     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
473 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
474 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
475 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
476     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
477     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
478     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
479     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
480     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
481     ../libBASS/simError.h
482 gezelter 1224 obj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \
483     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp \
484     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
485     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
486 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
487 gezelter 1224 ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
488 tim 1452 ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
489     ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
490 tim 1234 ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
491     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
492 tim 1452 ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
493     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
494 gezelter 1224 ../libBASS/simError.h
495 tim 1119 obj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVisitor.hpp ./BaseVisitor.hpp \
496     ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
497     ./GenericData.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
498 gezelter 1097 ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
499     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
500 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
501 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
502 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
503     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
504     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
505     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
506     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
507     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp
508 gezelter 1224 obj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \
509     ../libBASS/simError.h
510 gezelter 1097 MPIobj/mpiForceField$(O) : ./mpiForceField.c
511 tim 1119 MPIobj/MatVec3$(O) : ./MatVec3.c ../libBASS/simError.h ./MatVec3.h
512 gezelter 1097 MPIobj/Atom$(O) : ./Atom.cpp ../libBASS/simError.h ./Atom.hpp ./SimState.hpp \
513 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp
514 gezelter 1224 MPIobj/AtomVisitor$(O) : ./AtomVisitor.cpp ./AtomVisitor.hpp ./BaseVisitor.hpp \
515     ./DirectionalAtom.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
516     ./SimState.hpp ./MatVec3.h ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
517     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp
518 gezelter 1097 MPIobj/Bend$(O) : ./Bend.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
519 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
520 gezelter 1097 MPIobj/BendExtensions$(O) : ./BendExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
521 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
522     ./AbstractClasses.hpp ../libBASS/simError.h
523 gezelter 1097 MPIobj/Bond$(O) : ./Bond.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
524 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
525 gezelter 1097 MPIobj/BondExtensions$(O) : ./BondExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
526 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
527     ./AbstractClasses.hpp
528 gezelter 1269 MPIobj/CallbackFunctor$(O) : ./CallbackFunctor.cpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
529     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
530     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
531     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
532 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
533     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
534     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
535     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
536     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
537     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
538     ./fortranWrapDefines.hpp ./fSimulation.h
539 gezelter 1224 MPIobj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
540     ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
541     ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
542     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
543     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
544     ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
545 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
546 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
547     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
548     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
549     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
550     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
551     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
552     ./MinimizerParameterSet.hpp ./Utility.hpp
553 gezelter 1224 MPIobj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
554     ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
555     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
556     ../libBASS/AtomStamp.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp
557 gezelter 1269 MPIobj/ConstraintAlgorithm$(O) : ./ConstraintAlgorithm.cpp ./ConstraintAlgorithm.hpp \
558     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
559     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
560     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
561     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
562 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
563     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
564     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
565     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
566     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
567     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
568     ./fortranWrapDefines.hpp ./fSimulation.h ./ConstraintManager.hpp \
569 gezelter 1269 ../libBASS/simError.h
570     MPIobj/ConstraintElement$(O) : ./ConstraintElement.cpp ./ConstraintElement.hpp \
571     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
572     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
573 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./DirectionalAtom.hpp
574 gezelter 1269 MPIobj/ConstraintManager$(O) : ./ConstraintManager.cpp ./ConstraintManager.hpp \
575     ./Molecule.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
576     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
577     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
578     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
579     ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
580     ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
581 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
582     ./ConstraintIterator.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
583     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
584     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
585 gezelter 1097 MPIobj/DirectionalAtom$(O) : ./DirectionalAtom.cpp ./Atom.hpp ./SimState.hpp \
586 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
587     ../libBASS/simError.h ./MatVec3.h
588 gezelter 1224 MPIobj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
589     ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
590     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
591 tim 1119 ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
592     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
593 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
594 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
595 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
596     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
597     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
598     ../libBASS/simError.h ./fortranWrappers.hpp
599 gezelter 1097 MPIobj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
600 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
601     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
602     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
603     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
604 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
605 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
606 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
607     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
608     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
609     ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
610 gezelter 1224 MPIobj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
611     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
612     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
613 gezelter 1097 ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
614     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
615 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
616 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
617 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
618     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
619     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
620     ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
621 gezelter 1097 MPIobj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
622 tim 1119 ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
623     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
624     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
625     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
626 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
627 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
628 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
629     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
630     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
631     ../libBASS/simError.h ./fortranWrappers.hpp
632     MPIobj/Euler3$(O) : ./Euler3.cpp ./Euler3.hpp ./Mat3x3d.hpp ./Quaternion.hpp ./Vector4d.hpp \
633     ./Vector3d.hpp
634 gezelter 1224 MPIobj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
635     MPIobj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
636     ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
637     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
638     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
639     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
640     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
641 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
642 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
643     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
644     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
645     ./fortranWrappers.hpp
646 gezelter 1224 MPIobj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \
647     ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
648     ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
649     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
650     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
651     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
652     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
653 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
654 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
655     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
656     ./fSimulation.h ./fForceField.h
657 gezelter 1224 MPIobj/GenericData$(O) : ./GenericData.cpp ./GenericData.hpp
658     MPIobj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
659     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
660     ./DirectionalAtom.hpp ./AbstractClasses.hpp
661     MPIobj/InitializeFromFile$(O) : ./InitializeFromFile.cpp ./ReadWrite.hpp ./Atom.hpp \
662     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
663     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
664     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
665     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
666     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
667 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
668 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
669     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
670     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
671     ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
672 tim 1234 MPIobj/Integrator$(O) : ./Integrator.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
673     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
674     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
675     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
676     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
677 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./Roll.hpp ./Integrator.hpp \
678 tim 1268 ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
679     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
680     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
681     ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
682     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
683     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
684     ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
685 tim 1452 ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
686 gezelter 1224 MPIobj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
687 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
688     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
689     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
690     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
691 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
692 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
693 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
694     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
695     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
696     ../libBASS/simError.h ./fortranWrappers.hpp
697 gezelter 1269 MPIobj/Mat3x3d$(O) : ./Mat3x3d.cpp ./Mat3x3d.hpp ./Vector3d.hpp ./Quaternion.hpp \
698 tim 1452 ./Vector4d.hpp ./Euler3.hpp
699 gezelter 1224 MPIobj/mdProfile$(O) : ./mdProfile.cpp ./config.h ../libBASS/simError.h ./mdProfile.hpp
700 tim 1119 MPIobj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
701     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
702     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
703     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
704     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
705 gezelter 1154 ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
706 tim 1452 ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
707 tim 1234 ../libBASS/simError.h
708 gezelter 1224 MPIobj/mpiSimulation$(O) : ./mpiSimulation.cpp
709     MPIobj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
710     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
711     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
712     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
713     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
714     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
715 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
716     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
717     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
718     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
719     ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
720     ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
721 tim 1119 MPIobj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
722     ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
723     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
724 gezelter 1097 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
725     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
726     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
727 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
728 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
729     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
730     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
731     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp \
732     ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp \
733     ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
734 tim 1119 MPIobj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
735     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
736     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
737     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
738     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
739 tim 1158 ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
740 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
741     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
742     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
743     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
744     ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
745     ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
746 gezelter 1097 MPIobj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
747 tim 1119 ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
748     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
749 gezelter 1097 ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
750     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
751     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
752 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
753 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
754     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
755     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
756     ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp \
757     ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp \
758     ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
759 tim 1119 MPIobj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
760     ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
761     ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
762     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
763     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
764 tim 1158 ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
765 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp \
766     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
767     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
768     ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
769     ./ConstraintIterator.hpp ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp \
770     ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp ../libBASS/simError.h
771 gezelter 1097 MPIobj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp \
772 tim 1119 ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
773     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
774 gezelter 1097 ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
775     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
776 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
777 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
778 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
779     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
780     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
781     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
782     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
783     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
784     ./MinimizerParameterSet.hpp ./ShakeMin.hpp ./ConstraintAlgorithm.hpp \
785     ./CallbackFunctor.hpp ./TypeInfo.hpp
786 gezelter 1224 MPIobj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
787     ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
788     ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
789     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
790     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
791     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
792 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
793 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp ./Exclude.hpp \
794     ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
795     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
796 tim 1119 MPIobj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
797     ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
798     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
799     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
800     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
801 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
802 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
803 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
804     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
805     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
806     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
807     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
808     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
809     ./MinimizerParameterSet.hpp ./Utility.hpp
810 gezelter 1269 MPIobj/Quaternion$(O) : ./Quaternion.cpp ./Euler3.hpp ./Vector3d.hpp ./Mat3x3d.hpp \
811 tim 1452 ./Quaternion.hpp ./Vector4d.hpp
812 gezelter 1224 MPIobj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
813 gezelter 1269 MPIobj/Rattle$(O) : ./Rattle.cpp ./Rattle.hpp ./Shake.hpp ./ConstraintAlgorithm.hpp \
814     ./CallbackFunctor.hpp ./TypeInfo.hpp ./ConstraintIterator.hpp \
815     ./ConstraintPair.hpp ./ConstraintElement.hpp ./RigidBody.hpp \
816     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
817     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
818 tim 1452 ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
819     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
820     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
821     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
822     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
823     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
824     ./fortranWrapDefines.hpp ./fSimulation.h ./MatVec3.h
825 gezelter 1224 MPIobj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
826     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
827     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
828     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
829     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
830     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
831 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
832 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
833     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
834     ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h
835 gezelter 1224 MPIobj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
836     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
837     ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp \
838     ./BaseVisitor.hpp ../libBASS/simError.h ./MatVec3.h
839     MPIobj/RigidBodyVisitor$(O) : ./RigidBodyVisitor.cpp ./RigidBodyVisitor.hpp \
840     ./BaseVisitor.hpp ./GenericData.hpp ./RigidBody.hpp \
841     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
842     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./MatVec3.h
843 gezelter 1269 MPIobj/Roll$(O) : ./Roll.cpp ./Mat3x3d.hpp ./Roll.hpp ./Rattle.hpp ./Shake.hpp \
844     ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
845     ./ConstraintIterator.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp \
846     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
847     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
848     ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./SimInfo.hpp ./Molecule.hpp \
849     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
850     ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
851     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
852     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
853     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
854     ./fortranWrapDefines.hpp ./fSimulation.h
855 gezelter 1097 MPIobj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
856 tim 1119 ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
857     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
858     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
859 gezelter 1097 ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
860 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
861 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
862 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
863     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
864     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
865     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
866     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
867     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
868     ./MinimizerParameterSet.hpp ./Utility.hpp
869 gezelter 1269 MPIobj/Shake$(O) : ./Shake.cpp ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp \
870     ./TypeInfo.hpp ./ConstraintIterator.hpp ./ConstraintPair.hpp \
871     ./ConstraintElement.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
872     ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
873 tim 1452 ./GenericData.hpp ./Atom.hpp ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp \
874     ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
875     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
876     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
877     ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
878     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
879     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h \
880     ./MatVec3.h
881     MPIobj/ShakeMin$(O) : ./ShakeMin.cpp ./ConstraintElement.hpp ./RigidBody.hpp \
882     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
883     ../libBASS/AtomStamp.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
884     ./SimState.hpp ./BaseVisitor.hpp ./Vector3d.hpp ./ShakeMin.hpp \
885     ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
886     ./ConstraintIterator.hpp ./ConstraintPair.hpp ./SimInfo.hpp ./Molecule.hpp \
887     ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
888 gezelter 1269 ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
889     ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
890     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
891     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
892 tim 1452 ./fortranWrapDefines.hpp ./fSimulation.h
893 gezelter 1224 MPIobj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.hpp ./SimState.hpp \
894     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./RigidBody.hpp \
895     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
896     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
897     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
898     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
899 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
900 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
901     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
902     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h \
903     ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h \
904     ./MatVec3.h ./ConstraintManager.hpp ./ConstraintIterator.hpp
905 gezelter 1224 MPIobj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \
906     ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
907     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
908     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
909     ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp \
910     ../libBASS/Globals.hpp ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp \
911     ../libBASS/ZconStamp.hpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
912     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
913     ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
914 tim 1234 ./AbstractClasses.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
915 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
916     ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
917     ./fForceField.h ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp \
918     ./ConstraintIterator.hpp ./AllIntegrator.hpp ./Integrator.cpp ./Rattle.hpp \
919     ./Shake.hpp ./ConstraintAlgorithm.hpp ./CallbackFunctor.hpp ./TypeInfo.hpp \
920     ./Roll.hpp ./Integrator.hpp ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp \
921     ./Mat4x4d.hpp ../libBASS/simError.h ./NVT.cpp ../libBASS/simError.h ./NPTf.cpp \
922     ./MatVec3.h ../libBASS/simError.h ./NPT.cpp ../libBASS/simError.h ./NPTi.cpp \
923     ../libBASS/simError.h ./NPTxyz.cpp ../libBASS/simError.h ./ZConstraint.cpp \
924     ../libBASS/simError.h ./SQSIntegrator.cpp ./Mat3x3d.hpp ../libBASS/parse_me.h \
925     ../libBASS/simError.h ./OOPSEMinimizer.hpp ./MinimizerParameterSet.hpp \
926     ./ConstraintManager.hpp
927 gezelter 1224 MPIobj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp
928     MPIobj/SkipList$(O) : ./SkipList.cpp ./SkipList.hpp
929     MPIobj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
930     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
931     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
932     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
933     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
934     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
935 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
936 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
937     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
938     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
939     ./randomSPRNG.hpp ./ConstraintIterator.hpp ../libBASS/simError.h
940 gezelter 1224 MPIobj/StreamTokenizer$(O) : ./StreamTokenizer.cpp ./StreamTokenizer.hpp
941     MPIobj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
942     ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./RigidBody.hpp \
943     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
944     ../libBASS/AtomStamp.hpp ../libBASS/simError.h
945     MPIobj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
946     ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
947     ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
948     ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
949     ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
950     ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
951 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
952 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
953     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
954     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp \
955     ./ConstraintIterator.hpp ./Integrator.hpp ./ForceFields.hpp ./fForceField.h \
956     ./ReadWrite.hpp ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
957     ../libBASS/simError.h ./MatVec3.h ./ConstraintManager.hpp ./Mat3x3d.hpp
958 gezelter 1224 MPIobj/Torsion$(O) : ./Torsion.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
959     ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp
960     MPIobj/TorsionExtensions$(O) : ./TorsionExtensions.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \
961     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp \
962     ./AbstractClasses.hpp
963     MPIobj/Utility$(O) : ./Utility.cpp ./Utility.hpp
964 gezelter 1269 MPIobj/Vector3d$(O) : ./Vector3d.cpp ./Vector3d.hpp ./Mat3x3d.hpp
965 gezelter 1224 MPIobj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
966     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
967     ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
968     ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
969     ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
970     ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
971 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./ConstraintPair.hpp \
972 tim 1452 ./ConstraintElement.hpp ./Vector3d.hpp ./Exclude.hpp ./SkipList.hpp \
973     ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
974     ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
975     ../libBASS/simError.h ./fortranWrappers.hpp
976 gezelter 1097 MPIobj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
977 tim 1119 ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
978     ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
979     ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
980     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
981 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
982 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
983 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
984     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
985     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
986     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
987     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
988     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
989     ../libBASS/simError.h
990 gezelter 1224 MPIobj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \
991     ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp \
992     ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
993     ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
994 gezelter 1154 ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
995 gezelter 1224 ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
996 tim 1452 ./CutoffGroup.hpp ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp \
997     ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
998 tim 1234 ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
999     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
1000 tim 1452 ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
1001     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp \
1002 gezelter 1224 ../libBASS/simError.h
1003 tim 1119 MPIobj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVisitor.hpp ./BaseVisitor.hpp \
1004     ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
1005     ./GenericData.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
1006 gezelter 1097 ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
1007     ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
1008 gezelter 1154 ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
1009 tim 1234 ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp \
1010 tim 1452 ./ConstraintPair.hpp ./ConstraintElement.hpp ./Vector3d.hpp ./SimInfo.hpp \
1011     ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
1012     ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
1013     ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
1014     ./Thermo.hpp ./randomSPRNG.hpp ./ConstraintIterator.hpp ./ReadWrite.hpp \
1015     ./ZConsWriter.hpp ./Quaternion.hpp ./Vector4d.hpp ./Mat4x4d.hpp
1016 gezelter 1224 MPIobj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \
1017     ../libBASS/simError.h