--- trunk/OOPSE/libmdtools/Make.dep 2003/09/22 21:23:25 780 +++ trunk/OOPSE/libmdtools/Make.dep 2003/11/06 22:01:37 855 @@ -16,7 +16,16 @@ obj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ - ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h + ./fSimulation.h ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp \ + ../libBASS/simError.h +obj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \ + ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp \ + ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ + ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ + ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ + ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ + ./fSimulation.h ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp \ + ../libBASS/simError.h obj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp obj/InitializeFromFile$(O) : ./InitializeFromFile.cpp ./ReadWrite.hpp ./Atom.hpp \ ./SimState.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp \ @@ -24,28 +33,29 @@ obj/InitializeFromFile$(O) : ./InitializeFromFile.cpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ - ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h + ./fSimulation.h ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp \ + ../libBASS/simError.h obj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./SimInfo.hpp \ ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fForceField.h ../libBASS/simError.h \ - ./fortranWrappers.hpp + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fForceField.h \ + ../libBASS/simError.h ./fortranWrappers.hpp obj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./SimInfo.hpp \ ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fForceField.h ../libBASS/simError.h \ - ./fortranWrappers.hpp + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fForceField.h \ + ../libBASS/simError.h ./fortranWrappers.hpp obj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.hpp ./SimState.hpp ./Molecule.hpp \ ./SRI.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fSimulation.h ../libBASS/simError.h \ - ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fSimulation.h \ + ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h obj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ @@ -53,33 +63,35 @@ obj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../li ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp ../libBASS/ZconStamp.hpp \ ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./SimInfo.hpp ./Molecule.hpp \ ./SRI.hpp ./AbstractClasses.hpp ./Exclude.hpp ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fForceField.h ./ReadWrite.hpp \ - ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp ./Integrator.cpp \ - ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h ./NVT.cpp ./NPTf.cpp \ - ./NPT.cpp ./NPTi.cpp ./ZConstraint.cpp ../libBASS/parse_me.h + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fForceField.h \ + ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp \ + ./Integrator.cpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h \ + ./NVT.cpp ./NPTf.cpp ./NPT.cpp ./NPTi.cpp ./NPTxyz.cpp ./ZConstraint.cpp \ + ../libBASS/parse_me.h obj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \ ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp \ ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ - ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h + ./fSimulation.h ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp \ + ../libBASS/simError.h obj/Integrator$(O) : ./Integrator.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \ ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SimInfo.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \ ../libBASS/simError.h obj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp ./SimState.hpp ./SRI.hpp \ ./AbstractClasses.hpp ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./randomSPRNG.hpp ./Integrator.hpp \ - ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp \ - ../libBASS/simError.h + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./randomSPRNG.hpp \ + ./Integrator.hpp ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp \ + ./ZConsWriter.hpp ../libBASS/simError.h obj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \ ./SimState.hpp ./AbstractClasses.hpp obj/Torsion$(O) : ./Torsion.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \ @@ -91,61 +103,67 @@ obj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.hpp ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fForceField.h ../libBASS/simError.h \ - ./fortranWrappers.hpp + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fForceField.h \ + ../libBASS/simError.h ./fortranWrappers.hpp obj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h -obj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h +obj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \ + ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \ + ./Atom.hpp ./SimState.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \ + ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ + ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ + ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ + ../libBASS/BASS_interface.h ./fSimulation.h ./GenericData.hpp ./fForceField.h obj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \ ./Atom.hpp ./SimState.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \ ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ - ./GenericData.hpp ./fForceField.h ./fortranWrappers.hpp + ./fSimulation.h ./GenericData.hpp ./fForceField.h ./fortranWrappers.hpp obj/mpiSimulation$(O) : ./mpiSimulation.cpp obj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp ./SRI.hpp \ ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/simError.h +obj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ + ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ + ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ + ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ + ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./ZConsWriter.hpp ../libBASS/simError.h obj/NPTf$(O) : ./NPTf.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ ./ZConsWriter.hpp ../libBASS/simError.h obj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ ./ZConsWriter.hpp ../libBASS/simError.h -obj/NPTxym$(O) : ./NPTxym.cpp ./Atom.hpp ./SimState.hpp ./Molecule.hpp ./SRI.hpp \ - ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ - ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ - ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SimInfo.hpp \ +obj/NPTxyz$(O) : ./NPTxyz.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ + ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ + ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ + ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ ./ZConsWriter.hpp ../libBASS/simError.h -obj/NPTzm$(O) : ./NPTzm.cpp ./Atom.hpp ./SimState.hpp ./Molecule.hpp ./SRI.hpp \ - ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ - ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ - ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SimInfo.hpp \ - ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ - ./ZConsWriter.hpp ../libBASS/simError.h obj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ ./ZConsWriter.hpp ../libBASS/simError.h obj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp obj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \ @@ -153,8 +171,8 @@ obj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.h ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SimInfo.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \ ../libBASS/simError.h obj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \ ../libBASS/simError.h @@ -176,7 +194,16 @@ MPIobj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.h ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ - ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h + ./fSimulation.h ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp \ + ../libBASS/simError.h +MPIobj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \ + ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp \ + ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ + ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ + ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ + ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ + ./fSimulation.h ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp \ + ../libBASS/simError.h MPIobj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp MPIobj/InitializeFromFile$(O) : ./InitializeFromFile.cpp ./ReadWrite.hpp ./Atom.hpp \ ./SimState.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp \ @@ -184,28 +211,29 @@ MPIobj/InitializeFromFile$(O) : ./InitializeFromFile.c ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ - ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h + ./fSimulation.h ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp \ + ../libBASS/simError.h MPIobj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./SimInfo.hpp \ ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fForceField.h ../libBASS/simError.h \ - ./fortranWrappers.hpp + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fForceField.h \ + ../libBASS/simError.h ./fortranWrappers.hpp MPIobj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./SimInfo.hpp \ ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fForceField.h ../libBASS/simError.h \ - ./fortranWrappers.hpp + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fForceField.h \ + ../libBASS/simError.h ./fortranWrappers.hpp MPIobj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.hpp ./SimState.hpp ./Molecule.hpp \ ./SRI.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fSimulation.h ../libBASS/simError.h \ - ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fSimulation.h \ + ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h MPIobj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ @@ -213,33 +241,35 @@ MPIobj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp .. ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp ../libBASS/ZconStamp.hpp \ ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./SimInfo.hpp ./Molecule.hpp \ ./SRI.hpp ./AbstractClasses.hpp ./Exclude.hpp ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fForceField.h ./ReadWrite.hpp \ - ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp ./Integrator.cpp \ - ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h ./NVT.cpp ./NPTf.cpp \ - ./NPT.cpp ./NPTi.cpp ./ZConstraint.cpp ../libBASS/parse_me.h + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fForceField.h \ + ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp \ + ./Integrator.cpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h \ + ./NVT.cpp ./NPTf.cpp ./NPT.cpp ./NPTi.cpp ./NPTxyz.cpp ./ZConstraint.cpp \ + ../libBASS/parse_me.h MPIobj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \ ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp \ ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ - ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h + ./fSimulation.h ./GenericData.hpp ./Thermo.hpp ./randomSPRNG.hpp \ + ../libBASS/simError.h MPIobj/Integrator$(O) : ./Integrator.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \ ./Molecule.hpp ./SRI.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SimInfo.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \ ../libBASS/simError.h MPIobj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp ./SimState.hpp ./SRI.hpp \ ./AbstractClasses.hpp ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./randomSPRNG.hpp ./Integrator.hpp \ - ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp \ - ../libBASS/simError.h + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./randomSPRNG.hpp \ + ./Integrator.hpp ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp \ + ./ZConsWriter.hpp ../libBASS/simError.h MPIobj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \ ./SimState.hpp ./AbstractClasses.hpp MPIobj/Torsion$(O) : ./Torsion.cpp ./SRI.hpp ./Atom.hpp ./SimState.hpp \ @@ -251,61 +281,67 @@ MPIobj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom. ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./fForceField.h ../libBASS/simError.h \ - ./fortranWrappers.hpp + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./fForceField.h \ + ../libBASS/simError.h ./fortranWrappers.hpp MPIobj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h -MPIobj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h +MPIobj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \ + ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \ + ./Atom.hpp ./SimState.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \ + ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ + ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ + ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ + ../libBASS/BASS_interface.h ./fSimulation.h ./GenericData.hpp ./fForceField.h MPIobj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \ ./Atom.hpp ./SimState.hpp ./SimInfo.hpp ./Molecule.hpp ./SRI.hpp \ ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/MakeStamps.hpp \ ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \ - ./GenericData.hpp ./fForceField.h ./fortranWrappers.hpp + ./fSimulation.h ./GenericData.hpp ./fForceField.h ./fortranWrappers.hpp MPIobj/mpiSimulation$(O) : ./mpiSimulation.cpp MPIobj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp ./SRI.hpp \ ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ ../libBASS/TorsionStamp.hpp ./Exclude.hpp ../libBASS/simError.h +MPIobj/NPT$(O) : ./NPT.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ + ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ + ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ + ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ + ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./ZConsWriter.hpp ../libBASS/simError.h MPIobj/NPTf$(O) : ./NPTf.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ ./ZConsWriter.hpp ../libBASS/simError.h MPIobj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ ./ZConsWriter.hpp ../libBASS/simError.h -MPIobj/NPTxym$(O) : ./NPTxym.cpp ./Atom.hpp ./SimState.hpp ./Molecule.hpp ./SRI.hpp \ - ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ - ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ - ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SimInfo.hpp \ +MPIobj/NPTxyz$(O) : ./NPTxyz.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ + ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ + ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ + ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ ./ZConsWriter.hpp ../libBASS/simError.h -MPIobj/NPTzm$(O) : ./NPTzm.cpp ./Atom.hpp ./SimState.hpp ./Molecule.hpp ./SRI.hpp \ - ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \ - ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \ - ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SimInfo.hpp \ - ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ - ./ZConsWriter.hpp ../libBASS/simError.h MPIobj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./SRI.hpp ./AbstractClasses.hpp \ ./SimInfo.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \ ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \ ./ZConsWriter.hpp ../libBASS/simError.h MPIobj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp MPIobj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \ @@ -313,8 +349,8 @@ MPIobj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrato ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \ ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SimInfo.hpp \ ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \ - ./fortranWrapDefines.hpp ./GenericData.hpp ./ForceFields.hpp ./fForceField.h \ - ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \ + ./fortranWrapDefines.hpp ./fSimulation.h ./GenericData.hpp ./ForceFields.hpp \ + ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \ ../libBASS/simError.h MPIobj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \ ../libBASS/simError.h