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root/group/trunk/OOPSE/libmdtools/Make.dep
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Comparing trunk/OOPSE/libmdtools/Make.dep (file contents):
Revision 1119 by tim, Mon Apr 19 17:44:48 2004 UTC vs.
Revision 1199 by gezelter, Thu May 27 15:21:20 2004 UTC

# Line 22 | Line 22 | obj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp
22   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
23   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
24   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
25 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
26 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
25 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
26 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
27 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
28   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
29   ./randomSPRNG.hpp ../libBASS/simError.h
30   obj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
# Line 31 | Line 32 | obj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp
32   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
33   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
34   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
35 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
36 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
35 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
36 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
37 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
38   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
39   ./randomSPRNG.hpp ../libBASS/simError.h
40   obj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
# Line 42 | Line 44 | obj/InitializeFromFile$(O) : ./InitializeFromFile.cpp
44   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
45   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
46   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
47 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
48 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
49 < ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h
47 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
48 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
49 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
50 > ./randomSPRNG.hpp ../libBASS/simError.h
51   obj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
52   ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
53   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
54   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
55   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
56 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
57 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
56 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
57 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
58 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
59   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
60   ../libBASS/simError.h ./fortranWrappers.hpp
61   obj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
# Line 59 | Line 63 | obj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom
63   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
64   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
65   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
66 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
67 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
66 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
67 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
68 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
69   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
70   ../libBASS/simError.h ./fortranWrappers.hpp
71   obj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
# Line 68 | Line 73 | obj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.h
73   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
74   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
75   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
76 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
77 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
76 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
77 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
78 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
79   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
80   ../libBASS/simError.h ./fortranWrappers.hpp
81   obj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
# Line 81 | Line 87 | obj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.h
87   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
88   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
89   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
90 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
91 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
90 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
91 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
92 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
93   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h \
94   ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h \
95   ./MatVec3.h
# Line 90 | Line 97 | obj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../li
97   ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
98   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
99   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
100 < ../libBASS/RigidBodyStamp.hpp ../libBASS/Globals.hpp ../libBASS/Component.hpp \
101 < ../libBASS/LinkedCommand.hpp ../libBASS/ZconStamp.hpp ./ForceFields.hpp \
102 < ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
103 < ./SimInfo.hpp ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
104 < ./AbstractClasses.hpp ./Exclude.hpp ./SkipList.hpp ./fSimulation.h \
105 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./ReadWrite.hpp \
106 < ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp ./Integrator.cpp \
107 < ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h ./NVT.cpp ./NPTf.cpp \
108 < ./MatVec3.h ./NPT.cpp ./NPTi.cpp ./NPTxyz.cpp ./ZConstraint.cpp \
109 < ../libBASS/parse_me.h ./OOPSEMinimizer.hpp ./MinimizerParameterSet.hpp
100 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp \
101 > ../libBASS/Globals.hpp ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp \
102 > ../libBASS/ZconStamp.hpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
103 > ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
104 > ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
105 > ./AbstractClasses.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
106 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
107 > ./fForceField.h ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp \
108 > ./AllIntegrator.hpp ./Integrator.cpp ./Integrator.hpp ./ZConsWriter.hpp \
109 > ../libBASS/simError.h ./NVT.cpp ./NPTf.cpp ./MatVec3.h ./NPT.cpp ./NPTi.cpp \
110 > ./NPTxyz.cpp ./ZConstraint.cpp ../libBASS/parse_me.h ./OOPSEMinimizer.hpp \
111 > ./MinimizerParameterSet.hpp
112   obj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
113   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
114   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
115   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
116   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
117 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
118 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
117 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
118 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
119 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
120   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
121   ./randomSPRNG.hpp ../libBASS/simError.h
122   obj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
# Line 118 | Line 128 | obj/Integrator$(O) : ./Integrator.cpp ./Integrator.hpp
128   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
129   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
130   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
131 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
132 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
131 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
132 > ./CutoffGroup.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
133 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
134   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
135   ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
136   ../libBASS/simError.h
# Line 129 | Line 140 | obj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp
140   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
141   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
142   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
143 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
144 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
145 < ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp ./ForceFields.hpp \
146 < ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
143 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
144 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
145 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp \
146 > ./Integrator.hpp ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp \
147 > ./ZConsWriter.hpp ../libBASS/simError.h ./MatVec3.h
148   obj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
149   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
150   ./DirectionalAtom.hpp ./AbstractClasses.hpp
# Line 146 | Line 158 | obj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.hpp
158   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
159   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
160   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
161 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
162 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
161 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
162 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
163 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
164   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
165   ../libBASS/simError.h ./fortranWrappers.hpp
166   obj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
# Line 158 | Line 171 | obj/fortranWrappers$(O) : ./fortranWrappers.cpp ./conf
171   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
172   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
173   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
174 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
175 < ../libBASS/BASS_interface.h ./fSimulation.h ./fForceField.h
174 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
175 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
176 > ./fSimulation.h ./fForceField.h
177   obj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
178   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
179   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
180   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
181   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
182   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
183 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
184 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
185 < ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
183 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
184 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
185 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
186 > ./fortranWrappers.hpp
187   obj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
188   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
189   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
190   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
191   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
192 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ../libBASS/simError.h
192 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
193 > ./CutoffGroup.hpp ../libBASS/simError.h
194   obj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
195   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
196   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
197   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
198   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
199   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
200 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
201 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
202 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
203 < ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h
200 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
201 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
202 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
203 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
204 > ./ZConsWriter.hpp ../libBASS/simError.h
205   obj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
206   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
207   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
208   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
209   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
210 < ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SkipList.hpp \
211 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
210 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
211 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
212 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
213   ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
214   ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
215   ./ZConsWriter.hpp ../libBASS/simError.h
# Line 201 | Line 219 | obj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp .
219   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
220   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
221   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
222 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
223 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
224 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
225 < ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h
222 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
223 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
224 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
225 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
226 > ./ZConsWriter.hpp ../libBASS/simError.h
227   obj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
228   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
229   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
230   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
231   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
232 < ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SkipList.hpp \
233 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
232 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
233 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
234 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
235   ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
236   ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
237   ./ZConsWriter.hpp ../libBASS/simError.h
# Line 221 | Line 241 | obj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.h
241   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
242   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
243   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
244 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
245 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
244 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
245 > ./CutoffGroup.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
246 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
247   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
248   ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
249   ../libBASS/simError.h
# Line 237 | Line 258 | obj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOPSEM
258   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
259   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
260   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
261 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
262 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
263 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
264 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
265 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp
261 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
262 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
263 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
264 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
265 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
266 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
267 > ./MinimizerParameterSet.hpp
268   obj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
269   ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
270   ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
271   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
272   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
273 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
274 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
275 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
276 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
277 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
273 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
274 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
275 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
276 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
277 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
278 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
279 > ./MinimizerParameterSet.hpp ./Utility.hpp
280   obj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
281   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
282   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
283   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
284   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
285 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
286 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
287 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
288 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
289 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
285 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
286 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
287 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
288 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
289 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
290 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
291 > ./MinimizerParameterSet.hpp ./Utility.hpp
292   obj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
293   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
294   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
295   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
296   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
297 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
298 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
299 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
300 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
301 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
297 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
298 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
299 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
300 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
301 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
302 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
303 > ./MinimizerParameterSet.hpp ./Utility.hpp
304   obj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
305   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
306   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
307   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
308   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
309 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
310 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
311 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
312 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
313 < ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
309 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
310 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
311 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
312 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
313 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
314 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
315 > ../libBASS/simError.h
316   obj/AtomVisitor$(O) : ./AtomVisitor.cpp ./AtomVisitor.hpp ./BaseVisitor.hpp \
317   ./DirectionalAtom.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
318 < ./SimState.hpp ./MatVec3.h
318 > ./SimState.hpp ./MatVec3.h ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
319 > ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp
320   obj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
321 < ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp
321 > ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
322 > ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
323 > ../libBASS/AtomStamp.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp
324   obj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
325   ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
326   ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
327   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
328   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
329 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./SimInfo.hpp ./Exclude.hpp \
329 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
330 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./SimInfo.hpp ./Exclude.hpp \
331   ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
332 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
332 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
333   obj/RigidBodyVisitor$(O) : ./RigidBodyVisitor.cpp ./RigidBodyVisitor.hpp \
334   ./BaseVisitor.hpp ./GenericData.hpp ./RigidBody.hpp \
335   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 304 | Line 339 | obj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVisit
339   ./GenericData.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
340   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
341   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
342 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
343 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
344 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
345 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
346 < ./ReadWrite.hpp ./ZConsWriter.hpp
342 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
343 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
344 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
345 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
346 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
347 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp
348 > obj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
349 > ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
350 > ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
351 > ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
352 > ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
353 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
354 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
355 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
356 > ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h
357   MPIobj/mpiForceField$(O) : ./mpiForceField.c
358   MPIobj/MatVec3$(O) : ./MatVec3.c ../libBASS/simError.h ./MatVec3.h
359   MPIobj/fInfo$(O) : ./fInfo.c ./config.h ../libBASS/simError.h
# Line 332 | Line 377 | MPIobj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.h
377   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
378   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
379   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
380 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
381 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
380 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
381 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
382 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
383   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
384   ./randomSPRNG.hpp ../libBASS/simError.h
385   MPIobj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
# Line 341 | Line 387 | MPIobj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.h
387   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
388   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
389   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
390 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
391 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
390 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
391 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
392 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
393   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
394   ./randomSPRNG.hpp ../libBASS/simError.h
395   MPIobj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
# Line 352 | Line 399 | MPIobj/InitializeFromFile$(O) : ./InitializeFromFile.c
399   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
400   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
401   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
402 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
403 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
404 < ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h
402 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
403 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
404 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
405 > ./randomSPRNG.hpp ../libBASS/simError.h
406   MPIobj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
407   ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
408   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
409   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
410   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
411 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
412 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
411 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
412 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
413 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
414   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
415   ../libBASS/simError.h ./fortranWrappers.hpp
416   MPIobj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
# Line 369 | Line 418 | MPIobj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./A
418   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
419   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
420   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
421 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
422 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
421 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
422 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
423 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
424   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
425   ../libBASS/simError.h ./fortranWrappers.hpp
426   MPIobj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
# Line 378 | Line 428 | MPIobj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Ato
428   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
429   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
430   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
431 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
432 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
431 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
432 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
433 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
434   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
435   ../libBASS/simError.h ./fortranWrappers.hpp
436   MPIobj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
# Line 391 | Line 442 | MPIobj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Ato
442   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
443   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
444   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
445 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
446 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
445 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
446 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
447 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
448   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h \
449   ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h \
450   ./MatVec3.h
# Line 400 | Line 452 | MPIobj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ..
452   ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
453   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
454   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
455 < ../libBASS/RigidBodyStamp.hpp ../libBASS/Globals.hpp ../libBASS/Component.hpp \
456 < ../libBASS/LinkedCommand.hpp ../libBASS/ZconStamp.hpp ./ForceFields.hpp \
457 < ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
458 < ./SimInfo.hpp ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
459 < ./AbstractClasses.hpp ./Exclude.hpp ./SkipList.hpp ./fSimulation.h \
460 < ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./ReadWrite.hpp \
461 < ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp ./Integrator.cpp \
462 < ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h ./NVT.cpp ./NPTf.cpp \
463 < ./MatVec3.h ./NPT.cpp ./NPTi.cpp ./NPTxyz.cpp ./ZConstraint.cpp \
464 < ../libBASS/parse_me.h ./OOPSEMinimizer.hpp ./MinimizerParameterSet.hpp
455 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp \
456 > ../libBASS/Globals.hpp ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp \
457 > ../libBASS/ZconStamp.hpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
458 > ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
459 > ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
460 > ./AbstractClasses.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
461 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h \
462 > ./fForceField.h ./ReadWrite.hpp ./Thermo.hpp ./randomSPRNG.hpp \
463 > ./AllIntegrator.hpp ./Integrator.cpp ./Integrator.hpp ./ZConsWriter.hpp \
464 > ../libBASS/simError.h ./NVT.cpp ./NPTf.cpp ./MatVec3.h ./NPT.cpp ./NPTi.cpp \
465 > ./NPTxyz.cpp ./ZConstraint.cpp ../libBASS/parse_me.h ./OOPSEMinimizer.hpp \
466 > ./MinimizerParameterSet.hpp
467   MPIobj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
468   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
469   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
470   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
471   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
472 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
473 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
472 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
473 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
474 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
475   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
476   ./randomSPRNG.hpp ../libBASS/simError.h
477   MPIobj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
# Line 428 | Line 483 | MPIobj/Integrator$(O) : ./Integrator.cpp ./Integrator.
483   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
484   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
485   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
486 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
487 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
486 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
487 > ./CutoffGroup.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
488 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
489   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
490   ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
491   ../libBASS/simError.h
# Line 439 | Line 495 | MPIobj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.h
495   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
496   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
497   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
498 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
499 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
500 < ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp ./ForceFields.hpp \
501 < ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
498 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
499 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
500 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp \
501 > ./Integrator.hpp ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp \
502 > ./ZConsWriter.hpp ../libBASS/simError.h ./MatVec3.h
503   MPIobj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
504   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
505   ./DirectionalAtom.hpp ./AbstractClasses.hpp
# Line 456 | Line 513 | MPIobj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.
513   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
514   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
515   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
516 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
517 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
516 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
517 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
518 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
519   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
520   ../libBASS/simError.h ./fortranWrappers.hpp
521   MPIobj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
# Line 468 | Line 526 | MPIobj/fortranWrappers$(O) : ./fortranWrappers.cpp ./c
526   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
527   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
528   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
529 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
530 < ../libBASS/BASS_interface.h ./fSimulation.h ./fForceField.h
529 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
530 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
531 > ./fSimulation.h ./fForceField.h
532   MPIobj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
533   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
534   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
535   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
536   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
537   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
538 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
539 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
540 < ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
538 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
539 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
540 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
541 > ./fortranWrappers.hpp
542   MPIobj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
543   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
544   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
545   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
546   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
547 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ../libBASS/simError.h
547 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
548 > ./CutoffGroup.hpp ../libBASS/simError.h
549   MPIobj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
550   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
551   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
552   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
553   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
554   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
555 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
556 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
557 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
558 < ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h
555 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
556 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
557 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
558 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
559 > ./ZConsWriter.hpp ../libBASS/simError.h
560   MPIobj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
561   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
562   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
563   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
564   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
565 < ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SkipList.hpp \
566 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
565 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
566 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
567 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
568   ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
569   ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
570   ./ZConsWriter.hpp ../libBASS/simError.h
# Line 511 | Line 574 | MPIobj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hp
574   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
575   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
576   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
577 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
578 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
579 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
580 < ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h
577 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
578 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
579 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
580 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
581 > ./ZConsWriter.hpp ../libBASS/simError.h
582   MPIobj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
583   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
584   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
585   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
586   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
587 < ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SkipList.hpp \
588 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
587 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp \
588 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
589 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
590   ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
591   ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
592   ./ZConsWriter.hpp ../libBASS/simError.h
# Line 531 | Line 596 | MPIobj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrato
596   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
597   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
598   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
599 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
600 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
599 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
600 > ./CutoffGroup.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
601 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./Restraints.hpp \
602   ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
603   ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
604   ../libBASS/simError.h
# Line 547 | Line 613 | MPIobj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOP
613   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
614   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
615   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
616 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
617 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
618 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
619 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
620 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp
616 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
617 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
618 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
619 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
620 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
621 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
622 > ./MinimizerParameterSet.hpp
623   MPIobj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
624   ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
625   ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
626   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
627   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
628 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
629 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
630 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
631 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
632 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
628 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
629 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
630 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
631 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
632 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
633 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
634 > ./MinimizerParameterSet.hpp ./Utility.hpp
635   MPIobj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
636   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
637   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
638   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
639   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
640 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
641 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
642 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
643 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
644 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
640 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
641 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
642 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
643 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
644 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
645 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
646 > ./MinimizerParameterSet.hpp ./Utility.hpp
647   MPIobj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
648   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
649   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
650   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
651   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
652 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
653 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
654 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
655 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
656 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
652 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
653 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
654 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
655 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
656 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
657 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
658 > ./MinimizerParameterSet.hpp ./Utility.hpp
659   MPIobj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
660   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
661   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
662   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
663   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
664 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
665 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
666 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
667 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
668 < ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
664 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
665 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
666 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
667 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
668 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
669 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
670 > ../libBASS/simError.h
671   MPIobj/AtomVisitor$(O) : ./AtomVisitor.cpp ./AtomVisitor.hpp ./BaseVisitor.hpp \
672   ./DirectionalAtom.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
673 < ./SimState.hpp ./MatVec3.h
673 > ./SimState.hpp ./MatVec3.h ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
674 > ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp
675   MPIobj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
676 < ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp
676 > ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
677 > ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
678 > ../libBASS/AtomStamp.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp
679   MPIobj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
680   ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
681   ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
682   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
683   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
684 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./SimInfo.hpp ./Exclude.hpp \
684 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
685 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./SimInfo.hpp ./Exclude.hpp \
686   ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
687 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
687 > ./Restraints.hpp ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
688   MPIobj/RigidBodyVisitor$(O) : ./RigidBodyVisitor.cpp ./RigidBodyVisitor.hpp \
689   ./BaseVisitor.hpp ./GenericData.hpp ./RigidBody.hpp \
690   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 614 | Line 694 | MPIobj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVi
694   ./GenericData.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
695   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
696   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
697 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
698 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
699 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
700 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
701 < ./ReadWrite.hpp ./ZConsWriter.hpp
697 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
698 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./CutoffGroup.hpp ./SimInfo.hpp \
699 > ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
700 > ../libBASS/BASS_interface.h ./Restraints.hpp ./fSimulation.h \
701 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
702 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp
703 > MPIobj/Restraints$(O) : ./Restraints.cpp ./Restraints.hpp ./Atom.hpp ./SimState.hpp \
704 > ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
705 > ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
706 > ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
707 > ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
708 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
709 > ../libBASS/CutoffGroupStamp.hpp ./CutoffGroup.hpp ./Exclude.hpp ./SkipList.hpp \
710 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
711 > ./fortranWrapDefines.hpp ./fSimulation.h ../libBASS/simError.h

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