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root/group/trunk/OOPSE/libmdtools/Make.dep
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Comparing trunk/OOPSE/libmdtools/Make.dep (file contents):
Revision 1153 by tim, Mon Apr 19 17:44:48 2004 UTC vs.
Revision 1154 by gezelter, Tue May 11 16:00:22 2004 UTC

# Line 22 | Line 22 | obj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.hpp
22   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
23   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
24   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
25 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
26 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
27 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
28 < ./randomSPRNG.hpp ../libBASS/simError.h
25 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
26 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
27 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
28 > ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
29 > ../libBASS/simError.h
30   obj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
31   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
32   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
33   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
34   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
35 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
36 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
37 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
38 < ./randomSPRNG.hpp ../libBASS/simError.h
35 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
36 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
37 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
38 > ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
39 > ../libBASS/simError.h
40   obj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
41   obj/InitializeFromFile$(O) : ./InitializeFromFile.cpp ./ReadWrite.hpp ./Atom.hpp \
42   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
# Line 42 | Line 44 | obj/InitializeFromFile$(O) : ./InitializeFromFile.cpp
44   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
45   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
46   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
47 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
48 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
49 < ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h
47 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
48 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
49 > ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
50 > ../libBASS/simError.h
51   obj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
52   ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
53   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
54   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
55   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
56 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
57 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
58 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
59 < ../libBASS/simError.h ./fortranWrappers.hpp
56 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
57 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
58 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
59 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
60 > ./fortranWrappers.hpp
61   obj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
62   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
63   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
64   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
65   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
66 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
67 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
68 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
69 < ../libBASS/simError.h ./fortranWrappers.hpp
66 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
67 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
68 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
69 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
70 > ./fortranWrappers.hpp
71   obj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
72   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
73   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
74   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
75   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
76 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
77 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
78 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
79 < ../libBASS/simError.h ./fortranWrappers.hpp
76 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
77 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
78 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
79 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
80 > ./fortranWrappers.hpp
81   obj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
82   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
83   ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp \
# Line 81 | Line 87 | obj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Atom.h
87   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
88   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
89   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
90 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
91 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
92 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h \
93 < ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h \
94 < ./MatVec3.h
90 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
91 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
92 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
93 > ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h ../libBASS/simError.h \
94 > ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h ./MatVec3.h
95   obj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \
96   ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
97   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
98   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
99 < ../libBASS/RigidBodyStamp.hpp ../libBASS/Globals.hpp ../libBASS/Component.hpp \
100 < ../libBASS/LinkedCommand.hpp ../libBASS/ZconStamp.hpp ./ForceFields.hpp \
101 < ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
102 < ./SimInfo.hpp ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
99 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp \
100 > ../libBASS/Globals.hpp ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp \
101 > ../libBASS/ZconStamp.hpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
102 > ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
103 > ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
104   ./AbstractClasses.hpp ./Exclude.hpp ./SkipList.hpp ./fSimulation.h \
105   ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./ReadWrite.hpp \
106   ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp ./Integrator.cpp \
# Line 105 | Line 112 | obj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.hpp
112   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
113   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
114   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
115 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
116 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
117 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
118 < ./randomSPRNG.hpp ../libBASS/simError.h
115 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
116 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
117 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
118 > ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
119 > ../libBASS/simError.h
120   obj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
121   ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./RigidBody.hpp \
122   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 118 | Line 126 | obj/Integrator$(O) : ./Integrator.cpp ./Integrator.hpp
126   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
127   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
128   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
129 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
130 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
131 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
132 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
133 < ../libBASS/simError.h
129 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
130 > ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
131 > ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
132 > ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
133 > ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
134   obj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
135   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
136   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
137   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
138   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
139   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
140 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
141 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
142 < ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp ./ForceFields.hpp \
143 < ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
140 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
141 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
142 > ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp \
143 > ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp \
144 > ../libBASS/simError.h ./MatVec3.h
145   obj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
146   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
147   ./DirectionalAtom.hpp ./AbstractClasses.hpp
# Line 146 | Line 155 | obj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.hpp
155   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
156   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
157   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
158 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
159 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
160 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
161 < ../libBASS/simError.h ./fortranWrappers.hpp
158 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
159 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
160 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
161 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
162 > ./fortranWrappers.hpp
163   obj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
164   obj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \
165   ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
# Line 158 | Line 168 | obj/fortranWrappers$(O) : ./fortranWrappers.cpp ./conf
168   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
169   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
170   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
171 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
172 < ../libBASS/BASS_interface.h ./fSimulation.h ./fForceField.h
171 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
172 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
173 > ./fForceField.h
174   obj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
175   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
176   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
177   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
178   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
179   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
180 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
181 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
182 < ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
180 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
181 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
182 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
183   obj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
184   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
185   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
186   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
187   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
188 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ../libBASS/simError.h
188 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
189 > ../libBASS/simError.h
190   obj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
191   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
192   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
193   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
194   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
195   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
196 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
197 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
198 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
199 < ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h
196 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
197 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
198 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
199 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
200 > ./ZConsWriter.hpp ../libBASS/simError.h
201   obj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
202   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
203   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
204   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
205   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
206 < ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SkipList.hpp \
207 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
208 < ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
209 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
206 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp \
207 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
208 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
209 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
210   ./ZConsWriter.hpp ../libBASS/simError.h
211   obj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
212   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
# Line 201 | Line 214 | obj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp .
214   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
215   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
216   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
217 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
218 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
219 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
220 < ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h
217 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
218 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
219 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
220 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
221 > ./ZConsWriter.hpp ../libBASS/simError.h
222   obj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
223   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
224   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
225   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
226   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
227 < ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SkipList.hpp \
228 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
229 < ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
230 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
227 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp \
228 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
229 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
230 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
231   ./ZConsWriter.hpp ../libBASS/simError.h
232   obj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp
233   obj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \
# Line 221 | Line 235 | obj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.h
235   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
236   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
237   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
238 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
239 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
240 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
241 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
242 < ../libBASS/simError.h
238 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
239 > ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
240 > ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
241 > ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
242 > ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
243   obj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \
244   ../libBASS/simError.h
245   obj/mdProfile$(O) : ./mdProfile.cpp ./config.h ../libBASS/simError.h ./mdProfile.hpp
# Line 237 | Line 251 | obj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOPSEM
251   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
252   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
253   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
254 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
255 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
256 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
257 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
258 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp
254 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
255 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
256 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
257 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
258 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
259 > ./MinimizerParameterSet.hpp
260   obj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
261   ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
262   ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
263   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
264   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
265 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
266 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
267 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
268 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
269 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
265 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
266 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
267 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
268 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
269 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
270 > ./MinimizerParameterSet.hpp ./Utility.hpp
271   obj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
272   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
273   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
274   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
275   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
276 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
277 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
278 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
279 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
280 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
276 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
277 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
278 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
279 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
280 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
281 > ./MinimizerParameterSet.hpp ./Utility.hpp
282   obj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
283   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
284   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
285   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
286   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
287 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
288 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
289 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
290 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
291 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
287 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
288 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
289 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
290 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
291 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
292 > ./MinimizerParameterSet.hpp ./Utility.hpp
293   obj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
294   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
295   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
296   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
297   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
298 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
299 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
300 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
301 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
302 < ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
298 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
299 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
300 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
301 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
302 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
303 > ../libBASS/simError.h
304   obj/AtomVisitor$(O) : ./AtomVisitor.cpp ./AtomVisitor.hpp ./BaseVisitor.hpp \
305   ./DirectionalAtom.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
306 < ./SimState.hpp ./MatVec3.h
306 > ./SimState.hpp ./MatVec3.h ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
307 > ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp
308   obj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
309 < ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp
309 > ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
310 > ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
311 > ../libBASS/AtomStamp.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp
312   obj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
313   ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
314   ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
315   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
316   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
317 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./SimInfo.hpp ./Exclude.hpp \
318 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
319 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
317 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
318 > ../libBASS/CutoffGroupStamp.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
319 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
320 > ./fortranWrapDefines.hpp ./fSimulation.h
321   obj/RigidBodyVisitor$(O) : ./RigidBodyVisitor.cpp ./RigidBodyVisitor.hpp \
322   ./BaseVisitor.hpp ./GenericData.hpp ./RigidBody.hpp \
323   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 304 | Line 327 | obj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVisit
327   ./GenericData.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
328   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
329   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
330 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
331 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
332 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
333 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
334 < ./ReadWrite.hpp ./ZConsWriter.hpp
330 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
331 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
332 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
333 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
334 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp
335   MPIobj/mpiForceField$(O) : ./mpiForceField.c
336   MPIobj/MatVec3$(O) : ./MatVec3.c ../libBASS/simError.h ./MatVec3.h
337   MPIobj/fInfo$(O) : ./fInfo.c ./config.h ../libBASS/simError.h
# Line 332 | Line 355 | MPIobj/DumpWriter$(O) : ./DumpWriter.cpp ./ReadWrite.h
355   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
356   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
357   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
358 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
359 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
360 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
361 < ./randomSPRNG.hpp ../libBASS/simError.h
358 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
359 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
360 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
361 > ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
362 > ../libBASS/simError.h
363   MPIobj/DumpReader$(O) : ./DumpReader.cpp ./ReadWrite.hpp ./Atom.hpp ./SimState.hpp \
364   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
365   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
366   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
367   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
368 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
369 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
370 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
371 < ./randomSPRNG.hpp ../libBASS/simError.h
368 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
369 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
370 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
371 > ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
372 > ../libBASS/simError.h
373   MPIobj/Exclude$(O) : ./Exclude.cpp ./Exclude.hpp
374   MPIobj/InitializeFromFile$(O) : ./InitializeFromFile.cpp ./ReadWrite.hpp ./Atom.hpp \
375   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
# Line 352 | Line 377 | MPIobj/InitializeFromFile$(O) : ./InitializeFromFile.c
377   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
378   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
379   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
380 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
381 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
382 < ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp ../libBASS/simError.h
380 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
381 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
382 > ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
383 > ../libBASS/simError.h
384   MPIobj/LJFF$(O) : ./LJFF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
385   ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp ./RigidBody.hpp \
386   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
387   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
388   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
389 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
390 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
391 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
392 < ../libBASS/simError.h ./fortranWrappers.hpp
389 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
390 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
391 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
392 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
393 > ./fortranWrappers.hpp
394   MPIobj/EAM_FF$(O) : ./EAM_FF.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
395   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
396   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
397   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
398   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
399 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
400 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
401 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
402 < ../libBASS/simError.h ./fortranWrappers.hpp
399 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
400 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
401 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
402 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
403 > ./fortranWrappers.hpp
404   MPIobj/WATER$(O) : ./WATER.cpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
405   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
406   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
407   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
408   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
409 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
410 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
411 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
412 < ../libBASS/simError.h ./fortranWrappers.hpp
409 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
410 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
411 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
412 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
413 > ./fortranWrappers.hpp
414   MPIobj/RigidBody$(O) : ./RigidBody.cpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
415   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./StuntDouble.hpp \
416   ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp \
# Line 391 | Line 420 | MPIobj/SimInfo$(O) : ./SimInfo.cpp ./SimInfo.hpp ./Ato
420   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
421   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
422   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
423 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
424 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
425 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h \
426 < ../libBASS/simError.h ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h \
427 < ./MatVec3.h
423 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
424 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
425 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
426 > ./fortranWrapDefines.hpp ./fSimulation.h ./fSimulation.h ../libBASS/simError.h \
427 > ./fortranWrappers.hpp ./ForceFields.hpp ./fForceField.h ./MatVec3.h
428   MPIobj/SimSetup$(O) : ./SimSetup.cpp ./SimSetup.hpp ../libBASS/MakeStamps.hpp \
429   ../libBASS/BASS_interface.h ../libBASS/MoleculeStamp.hpp \
430   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
431   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
432 < ../libBASS/RigidBodyStamp.hpp ../libBASS/Globals.hpp ../libBASS/Component.hpp \
433 < ../libBASS/LinkedCommand.hpp ../libBASS/ZconStamp.hpp ./ForceFields.hpp \
434 < ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
435 < ./SimInfo.hpp ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
432 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp \
433 > ../libBASS/Globals.hpp ../libBASS/Component.hpp ../libBASS/LinkedCommand.hpp \
434 > ../libBASS/ZconStamp.hpp ./ForceFields.hpp ./Atom.hpp ./SimState.hpp \
435 > ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SimInfo.hpp \
436 > ./RigidBody.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
437   ./AbstractClasses.hpp ./Exclude.hpp ./SkipList.hpp ./fSimulation.h \
438   ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./ReadWrite.hpp \
439   ./Thermo.hpp ./randomSPRNG.hpp ./AllIntegrator.hpp ./Integrator.cpp \
# Line 415 | Line 445 | MPIobj/StatWriter$(O) : ./StatWriter.cpp ./ReadWrite.h
445   ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
446   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
447   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
448 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
449 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
450 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp \
451 < ./randomSPRNG.hpp ../libBASS/simError.h
448 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
449 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
450 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
451 > ./fortranWrapDefines.hpp ./fSimulation.h ./Thermo.hpp ./randomSPRNG.hpp \
452 > ../libBASS/simError.h
453   MPIobj/StuntDouble$(O) : ./StuntDouble.cpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
454   ./SimState.hpp ./BaseVisitor.hpp ./DirectionalAtom.hpp ./RigidBody.hpp \
455   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 428 | Line 459 | MPIobj/Integrator$(O) : ./Integrator.cpp ./Integrator.
459   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
460   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
461   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
462 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
463 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
464 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
465 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
466 < ../libBASS/simError.h
462 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
463 > ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
464 > ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
465 > ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
466 > ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
467   MPIobj/Thermo$(O) : ./Thermo.cpp ./Thermo.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
468   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
469   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
470   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
471   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
472   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
473 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
474 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
475 < ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp ./ForceFields.hpp \
476 < ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
473 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
474 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
475 > ./fortranWrapDefines.hpp ./fSimulation.h ./randomSPRNG.hpp ./Integrator.hpp \
476 > ./ForceFields.hpp ./fForceField.h ./ReadWrite.hpp ./ZConsWriter.hpp \
477 > ../libBASS/simError.h ./MatVec3.h
478   MPIobj/GhostBend$(O) : ./GhostBend.cpp ../libBASS/simError.h ./SRI.hpp ./Atom.hpp \
479   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
480   ./DirectionalAtom.hpp ./AbstractClasses.hpp
# Line 456 | Line 488 | MPIobj/DUFF$(O) : ./DUFF.cpp ./ForceFields.hpp ./Atom.
488   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
489   ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
490   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
491 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./Exclude.hpp \
492 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
493 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h \
494 < ../libBASS/simError.h ./fortranWrappers.hpp
491 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
492 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
493 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
494 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ../libBASS/simError.h \
495 > ./fortranWrappers.hpp
496   MPIobj/randomSPRNG$(O) : ./randomSPRNG.cpp ./randomSPRNG.hpp ../libBASS/simError.h
497   MPIobj/fortranWrappers$(O) : ./fortranWrappers.cpp ./config.h ./fSimulation.h \
498   ./fortranWrappers.hpp ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
# Line 468 | Line 501 | MPIobj/fortranWrappers$(O) : ./fortranWrappers.cpp ./c
501   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
502   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
503   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
504 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
505 < ../libBASS/BASS_interface.h ./fSimulation.h ./fForceField.h
504 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
505 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
506 > ./fForceField.h
507   MPIobj/ForceFields$(O) : ./ForceFields.cpp ../libBASS/simError.h ./ForceFields.hpp \
508   ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
509   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
510   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
511   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
512   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
513 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
514 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
515 < ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
513 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
514 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
515 > ./fortranWrapDefines.hpp ./fSimulation.h ./fForceField.h ./fortranWrappers.hpp
516   MPIobj/Molecule$(O) : ./Molecule.cpp ./Molecule.hpp ./Atom.hpp ./SimState.hpp \
517   ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp \
518   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
519   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
520   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
521 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ../libBASS/simError.h
521 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
522 > ../libBASS/simError.h
523   MPIobj/NPTf$(O) : ./NPTf.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
524   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
525   ./AbstractClasses.hpp ./SimInfo.hpp ./RigidBody.hpp \
526   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
527   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
528   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
529 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
530 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
531 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
532 < ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h
529 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
530 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
531 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
532 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
533 > ./ZConsWriter.hpp ../libBASS/simError.h
534   MPIobj/NPTi$(O) : ./NPTi.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
535   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
536   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
537   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
538   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
539 < ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SkipList.hpp \
540 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
541 < ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
542 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
539 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp \
540 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
541 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
542 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
543   ./ZConsWriter.hpp ../libBASS/simError.h
544   MPIobj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp \
545   ./GenericData.hpp ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp \
# Line 511 | Line 547 | MPIobj/NPTxyz$(O) : ./NPTxyz.cpp ./MatVec3.h ./Atom.hp
547   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
548   ../libBASS/AtomStamp.hpp ./Molecule.hpp ../libBASS/MoleculeStamp.hpp \
549   ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
550 < ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
551 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
552 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
553 < ./ReadWrite.hpp ./Integrator.hpp ./ZConsWriter.hpp ../libBASS/simError.h
550 > ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp ./SkipList.hpp \
551 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
552 > ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
553 > ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
554 > ./ZConsWriter.hpp ../libBASS/simError.h
555   MPIobj/NVT$(O) : ./NVT.cpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
556   ./BaseVisitor.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
557   ./SimInfo.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
558   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp \
559   ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
560 < ../libBASS/TorsionStamp.hpp ./Exclude.hpp ./SkipList.hpp \
561 < ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
562 < ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp ./fForceField.h \
563 < ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
560 > ../libBASS/TorsionStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./Exclude.hpp \
561 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
562 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
563 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./Integrator.hpp \
564   ./ZConsWriter.hpp ../libBASS/simError.h
565   MPIobj/SimState$(O) : ./SimState.cpp ../libBASS/simError.h ./SimState.hpp
566   MPIobj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrator.hpp ./Atom.hpp ./SimState.hpp \
# Line 531 | Line 568 | MPIobj/ZConstraint$(O) : ./ZConstraint.cpp ./Integrato
568   ./DirectionalAtom.hpp ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp \
569   ../libBASS/AtomStamp.hpp ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp \
570   ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
571 < ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
572 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
573 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
574 < ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
575 < ../libBASS/simError.h
571 > ../libBASS/RigidBodyStamp.hpp ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp \
572 > ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
573 > ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
574 > ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
575 > ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
576   MPIobj/ZConsWriter$(O) : ./ZConsWriter.cpp ./ZConsWriter.hpp ./GenericData.hpp \
577   ../libBASS/simError.h
578   MPIobj/mdProfile$(O) : ./mdProfile.cpp ./config.h ../libBASS/simError.h ./mdProfile.hpp
# Line 547 | Line 584 | MPIobj/OOPSEMinimizer$(O) : ./OOPSEMinimizer.cpp ./OOP
584   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
585   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
586   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
587 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
588 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
589 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
590 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
591 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp
587 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
588 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
589 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
590 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
591 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
592 > ./MinimizerParameterSet.hpp
593   MPIobj/CGFamilyMinimizer$(O) : ./CGFamilyMinimizer.cpp ./OOPSEMinimizer.hpp \
594   ./Integrator.hpp ./Atom.hpp ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp \
595   ./BaseVisitor.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
596   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
597   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
598 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
599 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
600 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
601 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
602 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
598 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
599 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
600 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
601 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
602 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
603 > ./MinimizerParameterSet.hpp ./Utility.hpp
604   MPIobj/PRCG$(O) : ./PRCG.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
605   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
606   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
607   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
608   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
609 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
610 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
611 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
612 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
613 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
609 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
610 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
611 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
612 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
613 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
614 > ./MinimizerParameterSet.hpp ./Utility.hpp
615   MPIobj/SDMinimizer$(O) : ./SDMinimizer.cpp ./OOPSEMinimizer.hpp ./Integrator.hpp ./Atom.hpp \
616   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
617   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
618   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
619   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
620 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
621 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
622 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
623 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
624 < ./ReadWrite.hpp ./ZConsWriter.hpp ./MinimizerParameterSet.hpp ./Utility.hpp
620 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
621 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
622 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
623 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
624 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
625 > ./MinimizerParameterSet.hpp ./Utility.hpp
626   MPIobj/ZConsReader$(O) : ./ZConsReader.cpp ./ZConsReader.hpp ./Integrator.hpp ./Atom.hpp \
627   ./SimState.hpp ./StuntDouble.hpp ./GenericData.hpp ./BaseVisitor.hpp \
628   ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp ./AbstractClasses.hpp \
629   ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
630   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
631 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
632 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
633 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
634 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
635 < ./ReadWrite.hpp ./ZConsWriter.hpp ../libBASS/simError.h
631 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
632 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
633 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
634 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
635 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp \
636 > ../libBASS/simError.h
637   MPIobj/AtomVisitor$(O) : ./AtomVisitor.cpp ./AtomVisitor.hpp ./BaseVisitor.hpp \
638   ./DirectionalAtom.hpp ./StuntDouble.hpp ./GenericData.hpp ./Atom.hpp \
639 < ./SimState.hpp ./MatVec3.h
639 > ./SimState.hpp ./MatVec3.h ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
640 > ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp
641   MPIobj/CompositeVisitor$(O) : ./CompositeVisitor.cpp ./CompositeVisitor.hpp \
642 < ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp
642 > ./BaseVisitor.hpp ./StuntDouble.hpp ./GenericData.hpp ./RigidBody.hpp \
643 > ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
644 > ../libBASS/AtomStamp.hpp ./DirectionalAtom.hpp ./Atom.hpp ./SimState.hpp
645   MPIobj/OtherVisitor$(O) : ./OtherVisitor.cpp ./OtherVisitor.hpp ./BaseVisitor.hpp \
646   ./StuntDouble.hpp ./GenericData.hpp ./DirectionalAtom.hpp ./Atom.hpp \
647   ./SimState.hpp ./RigidBody.hpp ../libBASS/RigidBodyStamp.hpp \
648   ../libBASS/LinkedAssign.hpp ../libBASS/AtomStamp.hpp ./Molecule.hpp ./SRI.hpp \
649   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/BondStamp.hpp \
650 < ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp ./SimInfo.hpp ./Exclude.hpp \
651 < ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
652 < ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h
650 > ../libBASS/BendStamp.hpp ../libBASS/TorsionStamp.hpp \
651 > ../libBASS/CutoffGroupStamp.hpp ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp \
652 > ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h ./fSimulation.h \
653 > ./fortranWrapDefines.hpp ./fSimulation.h
654   MPIobj/RigidBodyVisitor$(O) : ./RigidBodyVisitor.cpp ./RigidBodyVisitor.hpp \
655   ./BaseVisitor.hpp ./GenericData.hpp ./RigidBody.hpp \
656   ../libBASS/RigidBodyStamp.hpp ../libBASS/LinkedAssign.hpp \
# Line 614 | Line 660 | MPIobj/ZconsVisitor$(O) : ./ZconsVisitor.cpp ./ZconsVi
660   ./GenericData.hpp ./Molecule.hpp ./SRI.hpp ./DirectionalAtom.hpp \
661   ./AbstractClasses.hpp ../libBASS/MoleculeStamp.hpp ../libBASS/AtomStamp.hpp \
662   ../libBASS/LinkedAssign.hpp ../libBASS/BondStamp.hpp ../libBASS/BendStamp.hpp \
663 < ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp ./RigidBody.hpp \
664 < ./SimInfo.hpp ./Exclude.hpp ./SkipList.hpp ../libBASS/MakeStamps.hpp \
665 < ../libBASS/BASS_interface.h ./fSimulation.h ./fortranWrapDefines.hpp \
666 < ./fSimulation.h ./ForceFields.hpp ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp \
667 < ./ReadWrite.hpp ./ZConsWriter.hpp
663 > ../libBASS/TorsionStamp.hpp ../libBASS/RigidBodyStamp.hpp \
664 > ../libBASS/CutoffGroupStamp.hpp ./RigidBody.hpp ./SimInfo.hpp ./Exclude.hpp \
665 > ./SkipList.hpp ../libBASS/MakeStamps.hpp ../libBASS/BASS_interface.h \
666 > ./fSimulation.h ./fortranWrapDefines.hpp ./fSimulation.h ./ForceFields.hpp \
667 > ./fForceField.h ./Thermo.hpp ./randomSPRNG.hpp ./ReadWrite.hpp ./ZConsWriter.hpp

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