Fixed dependency bug (we hope)
roll in progress
1. adding some useful math classes(Mat3x3d, Vector3d, Quaternion, Euler3) these classes use anonymous union and struct to support double[3], double[3][3] and double[4] 2. adding roll constraint algorithm
new rattle algorithm is working
formatting error messages, dependency fixes
Fixed off-by-one error in groupStartRow and groupStartCol
fix two bugs in siminfo which cause infinite loop; fix anoter one in CutoffGroup which causes seg fault
Fixes to libmdtools to use the simplified cutoff stuff in the BASS library
Dump2XYZ is almost working except atoms in rigidbody are double counted
Change DumpWriter and InitFromFile
Changes for RigidBody dynamics (Somewhat extensive)
member list fixes for rigid bodies
More BASS changes to do new rigidBody scheme a copy of WATER.cpp from this morning
Some changes for new MPI organization and direct charge-charge interactions
added the following parameters to BASS: * useInitialExtendedSystemState * orthoBoxTolerance * useIntiTime => useInitialTime
Converted NPTf to work with the NPT base class. Removed NPTfm and NPTim from cvs
Added integrators to Makefile.in
dependency on config.h
Changes to autoconf / configure method of configuring OOPSE
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