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##################################################### |
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# Makefile for libmdtools (bundled with OOPSE) # |
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##################################################### |
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# You should not change anything here. # |
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##################################################### |
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# No make rules by default |
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.SUFFIXES : .c .cpp .F90 .hpp .h $(O) |
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# Extension of object files |
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O=@OBJEXT@ |
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# Extension of executables |
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EXE=@EXEEXT@ |
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# Bourn shell |
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SHELL=/bin/sh |
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# Path prefix for installation links |
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PREFIX=@prefix@ |
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# List of subdirectories |
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SUBDIRS=@SUBDIRS@ |
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# Location of the oopse home |
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OOPSE_HOME=@OOPSE_HOME@ |
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FORCE_PARAM_DIR=@OOPSE_HOME@/share/forceFields/ |
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SAMPLE_SIM_DIR=@OOPSE_HOME@/share/samples/ |
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# SPRNG library path |
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SPRNG_LIBDIR=@SPRNG_LIBDIR@ |
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# SPRNG library |
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SPRNG_LIB=@SPRNG_LIB@ |
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# SPRNG include path |
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SPRNG_INC=@SPRNG_INC@ |
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# MPICH library path |
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MPI_LIBDIR=@MPI_LIBDIR@ |
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# MPICH library |
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MPI_LIB=@MPI_LIB@ |
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# MPICH include path |
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MPI_INC=@MPI_INC@ |
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# MODDIRFLAG |
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MODDIRFLAG=@MODDIRFLAG@ |
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# Compiler dependent Fortran module |
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FLIBS_EXTRA = @F90LIBS@ |
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# Location of yacc (or its substitution) |
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YACC=@YACC@ |
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#location of lex |
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LEX=@LEX@ |
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# C compiler |
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CC=@CC@ |
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# C++ compiler |
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CXX=@CXX@ |
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# F90 compiler |
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F90=@F90@ |
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# ar |
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AR=@AR@ |
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# ranlib |
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RANLIB=@RANLIB@ |
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# rm |
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RM=rm -f |
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# soft link |
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LN_S=@LN_S@ |
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# BSD install |
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INSTALL=@INSTALL@ |
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INSTALL_PROGRAM=@INSTALL_PROGRAM@ |
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INSTALL_DATA=@INSTALL_DATA@ |
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MKINSTALLDIRS=@MKINSTALLDIRS@ |
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# CPP flags |
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CPPFLAGS=@CPPFLAGS@ |
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# C flags |
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CFLAGS_C=@CFLAGS@ |
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# C++ flags |
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CXXFLAGS_C=@CXXFLAGS@ |
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# C++ template flags |
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OOPSE_TEMPLATE_FLAGS=@OOPSE_TEMPLATE_FLAGS@ |
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# C++ namespace flags |
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EXTRA_CC_FLAG=@EXTRA_CC_FLAG@ |
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# Preprocessor flag for fortran |
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PREPFLAG=@PREPFLAG@ |
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# Preprocessor define flag for fortran |
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PREPDEFFLAG=@PREPDEFFLAG@ |
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# Fortran flags |
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FFLAGS_C=@FFLAGS@ |
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# Fortran90 flags |
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F90FLAGS_C=@F90FLAGS@ |
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# LDFLAGS |
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LDFLAGS=@LDFLAGS@ |
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# First do compile-time flags: |
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DECLARE=-DFRC_PATH="$(FORCE_PARAM_DIR)" |
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MPI_DECLARE=-DIS_MPI |
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# include paths starting with "." are all relative to the SUBDIRS!!! |
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INCLUDES= -I.. -I../../libBASS $(SPRNG_INC) |
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MPI_INCLUDES= -I$(MPI_INC) |
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F90_INCLUDES= -I/usr/local/include |
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CFLAGS=$(CFLAGS_C) $(INCLUDES) $(DECLARE) $(MPI_INCLUDES) $(FUNCWRAP) |
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CXXFLAGS=$(CXXFLAGS_C) $(OOPSE_TEMPLATE_FLAGS) $(EXTRA_CC_FLAG) $(INCLUDES) $(DECLARE) $(FUNCWRAP) |
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FFLAGS=$(PREPFLAG) $(FFLAGS_C) |
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chuckv |
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F90FLAGS=$(PREPFLAG) $(F90FLAGS_C) $(F90_INCLUDES) |
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DEPFLAGS=$(CFLAGS_C) -I. -I../libBASS $(SPRNG_INC) $(MPI_INCLUDES) |
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MPI_CFLAGS=$(CFLAGS) $(MPI_INCLUDES) $(MPI_DECLARE) |
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MPI_CXXFLAGS=$(CXXFLAGS) $(MPI_INCLUDES) $(MPI_DECLARE) |
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MPI_F90FLAGS=$(F90FLAGS) $(PREPDEFFLAG)$(MPI_DECLARE) $(MPI_INCLUDES) |
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SRC_DIR := .. |
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# Then do the compile rules: |
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obj/%.o: %.F90 |
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cd obj; $(F90) $(F90FLAGS) -c $(SRC_DIR)/$< |
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MPIobj/%.o: %.F90 |
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cd MPIobj; $(F90) $(MPI_F90FLAGS) -c $(SRC_DIR)/$< |
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obj/%.o: %.cpp |
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cd obj; $(CXX) $(CXXFLAGS) -c $(SRC_DIR)/$< |
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MPIobj/%.o: %.cpp |
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cd MPIobj; $(CXX) $(MPI_CXXFLAGS) -c $(SRC_DIR)/$< |
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obj/%.o: %.c |
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cd obj; $(CC) $(CFLAGS) -c $(SRC_DIR)/$< |
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MPIobj/%.o: %.c |
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cd MPIobj; $(CC) $(MPI_CFLAGS) -c $(SRC_DIR)/$< |
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# Then list what we have to compile |
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C_FILES = \ |
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$(DIR)/mpiForceField.c \ |
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$(DIR)/fInfo.c |
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CXX_FILES = \ |
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$(DIR)/Atom.cpp \ |
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$(DIR)/Bend.cpp \ |
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$(DIR)/BendExtensions.cpp \ |
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$(DIR)/Bond.cpp \ |
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$(DIR)/BondExtensions.cpp \ |
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$(DIR)/DirectionalAtom.cpp \ |
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$(DIR)/DumpWriter.cpp \ |
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$(DIR)/DumpReader.cpp \ |
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$(DIR)/Exclude.cpp \ |
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$(DIR)/InitializeFromFile.cpp \ |
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$(DIR)/LJFF.cpp \ |
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$(DIR)/EAM_FF.cpp \ |
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$(DIR)/WATER.cpp \ |
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$(DIR)/SimInfo.cpp \ |
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$(DIR)/SimSetup.cpp \ |
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$(DIR)/StatWriter.cpp \ |
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$(DIR)/Integrator.cpp \ |
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$(DIR)/Thermo.cpp \ |
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$(DIR)/GhostBend.cpp \ |
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$(DIR)/Torsion.cpp \ |
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$(DIR)/TorsionExtensions.cpp \ |
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$(DIR)/DUFF.cpp \ |
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$(DIR)/randomSPRNG.cpp \ |
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$(DIR)/fortranWrappers.cpp \ |
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$(DIR)/ForceFields.cpp \ |
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$(DIR)/Molecule.cpp \ |
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$(DIR)/NPTf.cpp \ |
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$(DIR)/NPTi.cpp \ |
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$(DIR)/NPTxyz.cpp \ |
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$(DIR)/NVT.cpp \ |
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$(DIR)/SimState.cpp \ |
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$(DIR)/ZConstraint.cpp \ |
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$(DIR)/ZConsWriter.cpp \ |
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mmeineke |
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$(DIR)/mdProfile.cpp \ |
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$(DIR)/GenericData.cpp \ |
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tim |
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$(DIR)/mpiSimulation.cpp \ |
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$(DIR)/NLModel0.cpp \ |
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$(DIR)/NLModel1.cpp \ |
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$(DIR)/Constraint.cpp \ |
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$(DIR)/SimpleBoundCons.cpp \ |
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$(DIR)/LinearCons.cpp \ |
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$(DIR)/NonlinearCons.cpp \ |
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$(DIR)/ConstraintList.cpp \ |
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$(DIR)/Minimizer1D.cpp \ |
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$(DIR)/ConjugateMinimizer.cpp \ |
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$(DIR)/Utility.cpp |
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F90_FILES= \ |
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$(DIR)/definitions_module.F90 \ |
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$(DIR)/status_module.F90 \ |
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$(DIR)/atype_module.F90 \ |
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$(DIR)/calc_dipole_dipole.F90 \ |
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$(DIR)/calc_charge_charge.F90 \ |
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$(DIR)/calc_reaction_field.F90 \ |
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$(DIR)/calc_LJ_FF.F90 \ |
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$(DIR)/calc_eam.F90 \ |
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$(DIR)/calc_sticky_pair.F90 \ |
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$(DIR)/do_Forces.F90 \ |
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$(DIR)/vector_class.F90 \ |
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$(DIR)/simulation_module.F90 \ |
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$(DIR)/wrappers.F90 \ |
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$(DIR)/neighborLists.F90 \ |
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$(DIR)/calc_gb.F90 \ |
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$(DIR)/force_globals.F90 \ |
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$(DIR)/mpiSimulation_module.F90 \ |
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$(DIR)/notifyCutoffs.F90 \ |
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$(DIR)/timing.F90 \ |
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$(DIR)/oopseMPI_module.F90 |
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DIR:=. |
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C_SRCS := $(C_FILES) |
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CXX_SRCS := $(CXX_FILES) |
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F90_SRCS := $(F90_FILES) |
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SRCS := $(C_SRCS) $(CXX_SRCS) $(F90_SRCS) |
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DIR:=obj |
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C_OBJS := $(C_FILES:.c=.o) |
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CXX_OBJS := $(CXX_FILES:.cpp=.o) |
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F90_OBJS := $(F90_FILES:.F90=.o) |
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OBJS := $(C_OBJS) $(CXX_OBJS) $(F90_OBJS) |
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DIR:=MPIobj |
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C_MPIOBJS := $(C_FILES:.c=.o) |
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CXX_MPIOBJS := $(CXX_FILES:.cpp=.o) |
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F90_MPIOBJS := $(F90_FILES:.F90=.o) |
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MPIOBJS := $(C_MPIOBJS) $(CXX_MPIOBJS) $(F90_MPIOBJS) |
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LIBSUBDIRS = \ |
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obj \ |
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MPIobj |
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# Possible make targets: |
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all: libmdtools.a libmdtools_MPI.a |
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libmdtools.a: $(OBJS) |
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$(RM) $@ |
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$(AR) cr $@ $(OBJS) |
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$(RANLIB) $@ |
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libmdtools_MPI.a: $(MPIOBJS) |
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$(RM) $@ |
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$(AR) cr $@ $(MPIOBJS) |
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$(RANLIB) $@ |
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.PHONY : clean |
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clean : dummy |
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for i in $(LIBSUBDIRS); do \ |
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(cd $$i; $(RM) *.o *.mod) || exit 1; \ |
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done |
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$(RM) libmdtools.a libmdtools_MPI.a *.o *.mod *~ Make.temp Make.ftemp |
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distclean : dummy |
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for i in $(LIBSUBDIRS); do \ |
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(cd $$i; $(RM) *.o *.mod) || exit 1; \ |
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done |
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$(RM) libmdtools.a libmdtools_MPI.a *.o *.mod *~ Make.temp Make.ftemp |
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depend : Make.dep |
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Make.dep : |
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echo "Only C dependencies are made automagically!" |
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echo "# DO NOT DELETE THIS LINE - used by make depend" > Make.dep |
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$(CC) $(DEPFLAGS) -MM $(C_SRCS) \ |
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| sed 's/\.o:/\$$(O)\ :/g' > Make.temp |
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$(CXX) $(DEPFLAGS) -MM $(CXX_SRCS) \ |
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| sed 's/\.o:/\$$(O)\ :/g' >> Make.temp |
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cat Make.temp | sed 's/^[a-zA-Z0-9]/obj\/&/g' >> Make.dep |
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cat Make.temp | sed 's/^[a-zA-Z0-9]/MPIobj\/&/g' >> Make.dep |
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# ../scripts/sfmakedepend -I $(MPI_F90_MODS) -d obj -f ./Make.ftemp -h *.F90 |
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# ../scripts/sfmakedepend -I $(MPI_F90_MODS) -d MPIobj -f ./Make.ftemp -h *.F90 |
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# cat Make.ftemp | sed 's/\.o:/\$$(O)\ :/g' >> Make.dep |
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$(RM) Make.ftemp Make.temp |
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install : dummy |
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links : dummy |
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tests : dummy |
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dummy : |
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include Make.dep |
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obj/definitions_module$(O): ./definitions_module.F90 |
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obj/vector_class$(O): ./vector_class.F90 |
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obj/status_module$(O): ./status_module.F90 |
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obj/force_globals$(O): ./force_globals.F90 \ |
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obj/definitions_module$(O) |
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obj/neighborLists$(O): ./neighborLists.F90 \ |
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obj/definitions_module$(O) |
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obj/calc_sticky_pair$(O): ./calc_sticky_pair.F90 \ |
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obj/definitions_module$(O) \ |
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obj/simulation_module$(O) \ |
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obj/force_globals$(O) |
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obj/calc_eam$(O): ./calc_eam.F90 \ |
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obj/definitions_module$(O) \ |
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obj/atype_module$(O) \ |
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obj/simulation_module$(O) \ |
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obj/vector_class$(O) \ |
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obj/force_globals$(O) \ |
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obj/status_module$(O) |
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obj/calc_gb$(O): ./calc_gb.F90 \ |
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obj/definitions_module$(O) \ |
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obj/simulation_module$(O) \ |
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obj/force_globals$(O) |
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obj/atype_module$(O): ./atype_module.F90 \ |
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obj/definitions_module$(O) \ |
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obj/vector_class$(O) |
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obj/simulation_module$(O): ./simulation_module.F90 \ |
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obj/definitions_module$(O) \ |
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obj/vector_class$(O) \ |
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obj/force_globals$(O) \ |
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obj/atype_module$(O) \ |
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obj/neighborLists$(O) |
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obj/calc_LJ_FF$(O): ./calc_LJ_FF.F90 \ |
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obj/definitions_module$(O) \ |
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obj/atype_module$(O) \ |
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obj/simulation_module$(O) \ |
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obj/vector_class$(O) \ |
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obj/force_globals$(O) |
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obj/calc_reaction_field$(O): ./calc_reaction_field.F90 \ |
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obj/definitions_module$(O) \ |
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obj/vector_class$(O) \ |
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obj/atype_module$(O) \ |
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obj/simulation_module$(O) \ |
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obj/force_globals$(O) |
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obj/calc_dipole_dipole$(O): ./calc_dipole_dipole.F90 \ |
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obj/definitions_module$(O) \ |
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obj/atype_module$(O) \ |
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obj/simulation_module$(O) \ |
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obj/force_globals$(O) \ |
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obj/vector_class$(O) |
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gezelter |
940 |
obj/calc_charge_charge$(O): ./calc_charge_charge.F90 \ |
377 |
|
|
obj/definitions_module$(O) \ |
378 |
|
|
obj/atype_module$(O) \ |
379 |
|
|
obj/simulation_module$(O) \ |
380 |
|
|
obj/force_globals$(O) \ |
381 |
|
|
obj/vector_class$(O) |
382 |
|
|
|
383 |
gezelter |
747 |
obj/do_Forces$(O): ./do_Forces.F90 \ |
384 |
|
|
obj/definitions_module$(O) \ |
385 |
|
|
obj/atype_module$(O) \ |
386 |
|
|
obj/simulation_module$(O) \ |
387 |
|
|
obj/neighborLists$(O) \ |
388 |
|
|
obj/calc_LJ_FF$(O) \ |
389 |
|
|
obj/calc_sticky_pair$(O) \ |
390 |
|
|
obj/calc_dipole_dipole$(O) \ |
391 |
|
|
obj/calc_reaction_field$(O) \ |
392 |
|
|
obj/calc_gb$(O) \ |
393 |
|
|
obj/force_globals$(O) \ |
394 |
|
|
obj/vector_class$(O) |
395 |
|
|
|
396 |
|
|
obj/notifyCutoffs$(O): ./notifyCutoffs.F90 \ |
397 |
|
|
obj/definitions_module$(O) \ |
398 |
|
|
obj/atype_module$(O) \ |
399 |
|
|
obj/calc_LJ_FF$(O) \ |
400 |
|
|
obj/calc_eam$(O) \ |
401 |
|
|
obj/calc_dipole_dipole$(O) \ |
402 |
|
|
obj/calc_reaction_field$(O) \ |
403 |
|
|
obj/do_Forces$(O) |
404 |
|
|
|
405 |
|
|
obj/wrappers$(O): ./wrappers.F90 \ |
406 |
|
|
obj/definitions_module$(O) \ |
407 |
|
|
obj/atype_module$(O) \ |
408 |
|
|
obj/simulation_module$(O) \ |
409 |
|
|
obj/calc_sticky_pair$(O) \ |
410 |
|
|
obj/calc_gb$(O) \ |
411 |
|
|
obj/do_Forces$(O) \ |
412 |
|
|
obj/notifyCutoffs$(O) |
413 |
|
|
|
414 |
mmeineke |
891 |
obj/timing$(O): ./timing.F90 \ |
415 |
|
|
obj/do_Forces$(O) |
416 |
gezelter |
747 |
|
417 |
|
|
|
418 |
|
|
|
419 |
|
|
#MPI dependencies: |
420 |
|
|
|
421 |
|
|
MPIobj/definitions_module$(O): ./definitions_module.F90 |
422 |
|
|
|
423 |
|
|
MPIobj/vector_class$(O): ./vector_class.F90 |
424 |
|
|
|
425 |
|
|
MPIobj/status_module$(O): ./status_module.F90 |
426 |
|
|
|
427 |
chuckv |
858 |
MPIobj/oopseMPI_module$(O): ./oopseMPI_module.F90 |
428 |
gezelter |
747 |
|
429 |
chuckv |
858 |
MPIobj/mpiSimulation_module$(O): ./mpiSimulation_module.F90 \ |
430 |
|
|
MPIobj/oopseMPI_module$(O) |
431 |
|
|
|
432 |
gezelter |
747 |
MPIobj/force_globals$(O): ./force_globals.F90 \ |
433 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
434 |
|
|
MPIobj/definitions_module$(O) |
435 |
|
|
|
436 |
|
|
MPIobj/neighborLists$(O): ./neighborLists.F90 \ |
437 |
|
|
MPIobj/definitions_module$(O) \ |
438 |
|
|
MPIobj/mpiSimulation_module$(O) |
439 |
|
|
|
440 |
|
|
MPIobj/calc_sticky_pair$(O): ./calc_sticky_pair.F90 \ |
441 |
|
|
MPIobj/definitions_module$(O) \ |
442 |
|
|
MPIobj/simulation_module$(O) \ |
443 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
444 |
|
|
MPIobj/force_globals$(O) |
445 |
|
|
|
446 |
|
|
MPIobj/calc_gb$(O): ./calc_gb.F90 \ |
447 |
|
|
MPIobj/definitions_module$(O) \ |
448 |
|
|
MPIobj/simulation_module$(O) \ |
449 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
450 |
|
|
MPIobj/force_globals$(O) |
451 |
|
|
|
452 |
|
|
MPIobj/calc_eam$(O): ./calc_eam.F90 \ |
453 |
|
|
MPIobj/definitions_module$(O) \ |
454 |
|
|
MPIobj/atype_module$(O) \ |
455 |
|
|
MPIobj/simulation_module$(O) \ |
456 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
457 |
|
|
MPIobj/vector_class$(O) \ |
458 |
|
|
MPIobj/force_globals$(O) \ |
459 |
|
|
MPIobj/status_module$(O) |
460 |
|
|
|
461 |
|
|
MPIobj/atype_module$(O): ./atype_module.F90 \ |
462 |
|
|
MPIobj/definitions_module$(O) \ |
463 |
|
|
MPIobj/vector_class$(O) |
464 |
|
|
|
465 |
|
|
MPIobj/simulation_module$(O): ./simulation_module.F90 \ |
466 |
|
|
MPIobj/definitions_module$(O) \ |
467 |
|
|
MPIobj/atype_module$(O) \ |
468 |
|
|
MPIobj/vector_class$(O) \ |
469 |
|
|
MPIobj/force_globals$(O) \ |
470 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
471 |
|
|
MPIobj/atype_module$(O) \ |
472 |
|
|
MPIobj/neighborLists$(O) |
473 |
|
|
|
474 |
|
|
MPIobj/calc_LJ_FF$(O): ./calc_LJ_FF.F90 \ |
475 |
|
|
MPIobj/definitions_module$(O) \ |
476 |
|
|
MPIobj/atype_module$(O) \ |
477 |
|
|
MPIobj/simulation_module$(O) \ |
478 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
479 |
|
|
MPIobj/atype_module$(O) \ |
480 |
|
|
MPIobj/vector_class$(O) \ |
481 |
|
|
MPIobj/force_globals$(O) |
482 |
|
|
|
483 |
|
|
MPIobj/calc_reaction_field$(O): ./calc_reaction_field.F90 \ |
484 |
|
|
MPIobj/definitions_module$(O) \ |
485 |
|
|
MPIobj/atype_module$(O) \ |
486 |
|
|
MPIobj/simulation_module$(O) \ |
487 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
488 |
|
|
MPIobj/vector_class$(O) \ |
489 |
|
|
MPIobj/atype_module$(O) \ |
490 |
|
|
MPIobj/force_globals$(O) |
491 |
|
|
|
492 |
|
|
MPIobj/calc_dipole_dipole$(O): ./calc_dipole_dipole.F90 \ |
493 |
|
|
MPIobj/definitions_module$(O) \ |
494 |
|
|
MPIobj/atype_module$(O) \ |
495 |
|
|
MPIobj/simulation_module$(O) \ |
496 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
497 |
|
|
MPIobj/force_globals$(O) \ |
498 |
|
|
MPIobj/vector_class$(O) |
499 |
|
|
|
500 |
gezelter |
940 |
MPIobj/calc_charge_charge$(O): ./calc_charge_charge.F90 \ |
501 |
|
|
MPIobj/definitions_module$(O) \ |
502 |
|
|
MPIobj/atype_module$(O) \ |
503 |
|
|
MPIobj/simulation_module$(O) \ |
504 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
505 |
|
|
MPIobj/force_globals$(O) \ |
506 |
|
|
MPIobj/vector_class$(O) |
507 |
|
|
|
508 |
gezelter |
747 |
MPIobj/do_Forces$(O): ./do_Forces.F90 \ |
509 |
|
|
MPIobj/definitions_module$(O) \ |
510 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
511 |
|
|
MPIobj/atype_module$(O) \ |
512 |
|
|
MPIobj/simulation_module$(O) \ |
513 |
|
|
MPIobj/neighborLists$(O) \ |
514 |
|
|
MPIobj/calc_LJ_FF$(O) \ |
515 |
|
|
MPIobj/calc_sticky_pair$(O) \ |
516 |
|
|
MPIobj/calc_dipole_dipole$(O) \ |
517 |
|
|
MPIobj/calc_reaction_field$(O) \ |
518 |
|
|
MPIobj/calc_gb$(O) \ |
519 |
|
|
MPIobj/force_globals$(O) \ |
520 |
|
|
MPIobj/vector_class$(O) |
521 |
|
|
|
522 |
|
|
MPIobj/notifyCutoffs$(O): ./notifyCutoffs.F90 \ |
523 |
|
|
MPIobj/definitions_module$(O) \ |
524 |
|
|
MPIobj/atype_module$(O) \ |
525 |
|
|
MPIobj/calc_LJ_FF$(O) \ |
526 |
|
|
MPIobj/calc_eam$(O) \ |
527 |
|
|
MPIobj/calc_dipole_dipole$(O) \ |
528 |
|
|
MPIobj/calc_reaction_field$(O) \ |
529 |
|
|
MPIobj/do_Forces$(O) |
530 |
|
|
|
531 |
|
|
MPIobj/wrappers$(O): ./wrappers.F90 \ |
532 |
|
|
MPIobj/definitions_module$(O) \ |
533 |
|
|
MPIobj/mpiSimulation_module$(O) \ |
534 |
|
|
MPIobj/atype_module$(O) \ |
535 |
|
|
MPIobj/simulation_module$(O) \ |
536 |
|
|
MPIobj/calc_sticky_pair$(O) \ |
537 |
|
|
MPIobj/calc_gb$(O) \ |
538 |
|
|
MPIobj/do_Forces$(O) \ |
539 |
|
|
MPIobj/notifyCutoffs$(O) |
540 |
|
|
|
541 |
mmeineke |
891 |
MPIobj/timing$(O): ./timing.F90 \ |
542 |
|
|
MPIobj/do_Forces$(O) \ |
543 |
|
|
MPIobj/mpiSimulation_module$(O) |