Most of the integrator and NVT seem to be working now.
slowly converting to new integrator and forcefield names.
Added ExtendedSystem infrastructure for NPT and NVT calculations
bug fixes for compilation
Breaking c and fortran, c gets smarter, fortran gets dumber...
fixed some small things with simError.h
fixed the makefile
fixing some compile time bugs
Added Atom.cpp and Exclude.cpp
Fixed F_MACH_DEP bug
Makefile fixes, directory re-org, autoconf fixes
Makefile fixes for depends
This commit was generated by cvs2svn to compensate for changes in r377, which included commits to RCS files with non-trunk default branches.
New OOPSE Tree
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