--- trunk/OOPSE/libmdtools/Makefile	2003/03/21 20:37:58	385
+++ trunk/OOPSE/libmdtools/Makefile	2003/03/21 20:52:11	386
@@ -171,56 +171,54 @@ include Make.dep
 
 include Make.dep
 
-# known dependencies
+obj/$(F_MACH_DEFS): ./Linux_ifc_machdep.F90
 
-obj/$(F_MACH_DEFS): Linux_ifc_machdep.F90
+obj/vector_class$(O): ./vector_class.F90
 
-obj/vector_class$(O): vector_class.F90
-
-obj/force_globals$(O): force_globals.F90 \
+obj/force_globals$(O): ./force_globals.F90 \
 	obj/$(F_MACH_DEFS)
 
-obj/neighborLists$(O): neighborLists.F90 \
+obj/neighborLists$(O): ./neighborLists.F90 \
 	obj/$(F_MACH_DEFS) 
 
-obj/calc_sticky_pair$(O): calc_sticky_pair.F90 \
+obj/calc_sticky_pair$(O): ./calc_sticky_pair.F90 \
 	obj/$(F_MACH_DEFS) \
 	obj/force_globals$(O)
 
-obj/calc_gb$(O): calc_gb.F90 \
+obj/calc_gb$(O): ./calc_gb.F90 \
 	obj/$(F_MACH_DEFS) \
 	obj/force_globals$(O)
 
-obj/atype_module$(O): atype_module.F90 \
+obj/atype_module$(O): ./atype_module.F90 \
 	obj/$(F_MACH_DEFS) \
 	obj/vector_class$(O) \
 	obj/calc_sticky_pair$(O) \
 	obj/calc_gb$(O)
 
-obj/simulation_module$(O): simulation_module.F90 \
+obj/simulation_module$(O): ./simulation_module.F90 \
 	obj/$(F_MACH_DEFS) \
 	obj/atype_module$(O) \
 	obj/neighborLists$(O)
 
-obj/calc_LJ_FF$(O): calc_LJ_FF.F90 \
+obj/calc_LJ_FF$(O): ./calc_LJ_FF.F90 \
 	obj/$(F_MACH_DEFS) \
 	obj/atype_module$(O) \
 	obj/vector_class$(O) \
 	obj/force_globals$(O)
 
-obj/calc_reaction_field$(O): calc_reaction_field.F90 \
+obj/calc_reaction_field$(O): ./calc_reaction_field.F90 \
 	obj/$(F_MACH_DEFS) \
 	obj/vector_class$(O) \
 	obj/atype_module$(O) \
 	obj/force_globals$(O)
 
-obj/calc_dipole_dipole$(O): calc_dipole_dipole.F90 \
+obj/calc_dipole_dipole$(O): ./calc_dipole_dipole.F90 \
 	obj/$(F_MACH_DEFS) \
 	obj/atype_module$(O) \
 	obj/force_globals$(O) \
 	obj/vector_class$(O)
 
-obj/do_Forces$(O): do_Forces.F90 \
+obj/do_Forces$(O): ./do_Forces.F90 \
 	obj/$(F_MACH_DEFS) \
 	obj/simulation_module$(O) \
 	obj/atype_module$(O) \
@@ -232,7 +230,7 @@ obj/wrappers$(O): wrappers.F90 \
 	obj/calc_gb$(O) \
 	obj/force_globals$(O)
 
-obj/wrappers$(O): wrappers.F90 \
+obj/wrappers$(O): ./wrappers.F90 \
 	obj/$(F_MACH_DEFS) \
 	obj/simulation_module$(O) \
 	obj/atype_module$(O) \
@@ -240,64 +238,64 @@ MPIobj/$(F_MACH_DEFS): Linux_ifc_machdep.F90
 
 #MPI dependencies:
 
-MPIobj/$(F_MACH_DEFS): Linux_ifc_machdep.F90
+MPIobj/$(F_MACH_DEFS): ./Linux_ifc_machdep.F90
+
+MPIobj/vector_class$(O): ./vector_class.F90
 
-MPIobj/vector_class$(O): vector_class.F90
+MPIobj/mpiSimulation_module$(O): ./mpiSimulation_module.F90
 
-MPIobj/mpiSimulation_module$(O): mpiSimulation_module.F90
-
-MPIobj/force_globals$(O): force_globals.F90 \
+MPIobj/force_globals$(O): ./force_globals.F90 \
 	MPIobj/mpiSimulation_module$(O) \
 	MPIobj/$(F_MACH_DEFS)
 
-MPIobj/neighborLists$(O): neighborLists.F90 \
+MPIobj/neighborLists$(O): ./neighborLists.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/mpiSimulation_module$(O) 
 
-MPIobj/calc_sticky_pair$(O): calc_sticky_pair.F90 \
+MPIobj/calc_sticky_pair$(O): ./calc_sticky_pair.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/mpiSimulation_module$(O) \
 	MPIobj/force_globals$(O)
 
-MPIobj/calc_gb$(O): calc_gb.F90 \
+MPIobj/calc_gb$(O): ./calc_gb.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/mpiSimulation_module$(O) \
 	MPIobj/force_globals$(O)
 
-MPIobj/atype_module$(O): atype_module.F90 \
+MPIobj/atype_module$(O): ./atype_module.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/vector_class$(O) \
 	MPIobj/calc_sticky_pair$(O) \
 	MPIobj/calc_gb$(O)
 
-MPIobj/simulation_module$(O): simulation_module.F90 \
+MPIobj/simulation_module$(O): ./simulation_module.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/mpiSimulation_module$(O) \
 	MPIobj/atype_module$(O) \
 	MPIobj/neighborLists$(O)
 
-MPIobj/calc_LJ_FF$(O): calc_LJ_FF.F90 \
+MPIobj/calc_LJ_FF$(O): ./calc_LJ_FF.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/mpiSimulation_module$(O) \
 	MPIobj/atype_module$(O) \
 	MPIobj/vector_class$(O) \
 	MPIobj/force_globals$(O)
 
-MPIobj/calc_reaction_field$(O): calc_reaction_field.F90 \
+MPIobj/calc_reaction_field$(O): ./calc_reaction_field.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/mpiSimulation_module$(O) \
 	MPIobj/vector_class$(O) \
 	MPIobj/atype_module$(O) \
 	MPIobj/force_globals$(O)
 
-MPIobj/calc_dipole_dipole$(O): calc_dipole_dipole.F90 \
+MPIobj/calc_dipole_dipole$(O): ./calc_dipole_dipole.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/mpiSimulation_module$(O) \
 	MPIobj/atype_module$(O) \
 	MPIobj/force_globals$(O) \
 	MPIobj/vector_class$(O)
 
-MPIobj/do_Forces$(O): do_Forces.F90 \
+MPIobj/do_Forces$(O): ./do_Forces.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/mpiSimulation_module$(O) \
 	MPIobj/simulation_module$(O) \
@@ -310,7 +308,7 @@ MPIobj/wrappers$(O): wrappers.F90 \
 	MPIobj/calc_gb$(O) \
 	MPIobj/force_globals$(O)
 
-MPIobj/wrappers$(O): wrappers.F90 \
+MPIobj/wrappers$(O): ./wrappers.F90 \
 	MPIobj/$(F_MACH_DEFS) \
 	MPIobj/mpiSimulation_module$(O) \
 	MPIobj/simulation_module$(O) \