--- trunk/OOPSE/libmdtools/Makefile	2003/06/19 22:02:44	559
+++ trunk/OOPSE/libmdtools/Makefile	2003/06/20 20:29:36	561
@@ -29,25 +29,27 @@ MPI_FFLAGS=$(FFLAGS) $(MPI_INCLUDES) $(MPI_DECLARES)
 MPI_CXXFLAGS=$(CXXFLAGS) $(MPI_INCLUDES) $(MPI_DECLARES)
 MPI_FFLAGS=$(FFLAGS) $(MPI_INCLUDES) $(MPI_DECLARES)
 
+SRC_DIR := $(PWD)
+
 # Then do the compile rules:
 
 obj/%.o: %.F90
-	cd obj; $(FC) $(FFLAGS) -c  ../$<
+	cd obj; $(FC) $(FFLAGS) -c  $(SRC_DIR)/$<
 
 MPIobj/%.o: %.F90
-	cd MPIobj; $(FC) $(MPI_FFLAGS) -c ../$<
+	cd MPIobj; $(FC) $(MPI_FFLAGS) -c $(SRC_DIR)/$<
 
 obj/%.o: %.cpp
-	cd obj; $(CXX) $(CXXFLAGS) -c ../$<
+	cd obj; $(CXX) $(CXXFLAGS) -c $(SRC_DIR)/$<
 
 MPIobj/%.o: %.cpp
-	cd MPIobj; $(CXX) $(MPI_CXXFLAGS) -c ../$<
+	cd MPIobj; $(CXX) $(MPI_CXXFLAGS) -c $(SRC_DIR)/$<
 
 obj/%.o: %.c
-	cd obj; $(CC) $(CFLAGS) -c ../$<
+	cd obj; $(CC) $(CFLAGS) -c $(SRC_DIR)/$<
 
 MPIobj/%.o: %.c
-	cd MPIobj; $(CC) $(MPI_CFLAGS) -c ../$<
+	cd MPIobj; $(CC) $(MPI_CFLAGS) -c $(SRC_DIR)/$<
 
 # Then list what we have to compile
 
@@ -62,7 +64,6 @@ CXX_FILES = \
 	$(DIR)/DirectionalAtom.cpp \
 	$(DIR)/DumpWriter.cpp \
 	$(DIR)/Exclude.cpp \
-	$(DIR)/ExtendedSystem.cpp \
 	$(DIR)/InitializeFromFile.cpp \
 	$(DIR)/LJFF.cpp \
 	$(DIR)/SimInfo.cpp \
@@ -78,7 +79,8 @@ CXX_FILES = \
 	$(DIR)/fortranWrappers.cpp \
 	$(DIR)/ForceFields.cpp \
 	$(DIR)/mpiSimulation.cpp \
-	$(DIR)/Molecule.cpp
+	$(DIR)/Molecule.cpp \
+	$(DIR)/NVT.cpp
 
 
 F90_FILES= \