23 |
|
|
24 |
|
const char *jolt = " \t\n;,"; |
25 |
|
|
26 |
< |
strcpy(springName, "HarmSpringConsts.txt"); |
26 |
> |
#ifdef IS_MPI |
27 |
> |
if(worldRank == 0 ){ |
28 |
> |
#endif // is_mpi |
29 |
|
|
30 |
< |
ifstream springs(springName); |
31 |
< |
|
32 |
< |
if (!springs) { |
33 |
< |
sprintf(painCave.errMsg, |
34 |
< |
"Restraints Warning: Unable to open HarmSpringConsts.txt for reading.\n" |
35 |
< |
"\tDefault spring constants will be loaded. If you want to specify\n" |
36 |
< |
"\tspring constants, include a three line HarmSpringConsts.txt file\n" |
37 |
< |
"\tin the current directory.\n"); |
38 |
< |
painCave.isFatal = 0; |
39 |
< |
simError(); |
40 |
< |
|
41 |
< |
// load default spring constants |
42 |
< |
kDist = 6; // spring constant in units of kcal/(mol*ang^2) |
43 |
< |
kTheta = 7.5; // in units of kcal/mol |
44 |
< |
kOmega = 13.5; // in units of kcal/mol |
45 |
< |
return; |
30 |
> |
strcpy(springName, "HarmSpringConsts.txt"); |
31 |
> |
|
32 |
> |
ifstream springs(springName); |
33 |
> |
|
34 |
> |
if (!springs) { |
35 |
> |
sprintf(painCave.errMsg, |
36 |
> |
"In Restraints: Unable to open HarmSpringConsts.txt for reading.\n" |
37 |
> |
"\tDefault spring constants will be loaded. If you want to specify\n" |
38 |
> |
"\tspring constants, include a three line HarmSpringConsts.txt file\n" |
39 |
> |
"\tin the current directory.\n"); |
40 |
> |
painCave.severity = OOPSE_WARNING; |
41 |
> |
painCave.isFatal = 0; |
42 |
> |
simError(); |
43 |
> |
|
44 |
> |
// load default spring constants |
45 |
> |
kDist = 6; // spring constant in units of kcal/(mol*ang^2) |
46 |
> |
kTheta = 7.5; // in units of kcal/mol |
47 |
> |
kOmega = 13.5; // in units of kcal/mol |
48 |
> |
} else { |
49 |
> |
|
50 |
> |
springs.getline(inLine,999,'\n'); |
51 |
> |
springs.getline(inLine,999,'\n'); |
52 |
> |
token = strtok(inLine,jolt); |
53 |
> |
token = strtok(NULL,jolt); |
54 |
> |
strcpy(inValue,token); |
55 |
> |
kDist = (atof(inValue)); |
56 |
> |
springs.getline(inLine,999,'\n'); |
57 |
> |
token = strtok(inLine,jolt); |
58 |
> |
token = strtok(NULL,jolt); |
59 |
> |
strcpy(inValue,token); |
60 |
> |
kTheta = (atof(inValue)); |
61 |
> |
springs.getline(inLine,999,'\n'); |
62 |
> |
token = strtok(inLine,jolt); |
63 |
> |
token = strtok(NULL,jolt); |
64 |
> |
strcpy(inValue,token); |
65 |
> |
kOmega = (atof(inValue)); |
66 |
> |
springs.close(); |
67 |
> |
} |
68 |
> |
#ifdef IS_MPI |
69 |
|
} |
70 |
+ |
|
71 |
+ |
MPI_Bcast(&kDist, 1, MPI_DOUBLE, 0, MPI_COMM_WORLD); |
72 |
+ |
MPI_Bcast(&kTheta, 1, MPI_DOUBLE, 0, MPI_COMM_WORLD); |
73 |
+ |
MPI_Bcast(&kOmega, 1, MPI_DOUBLE, 0, MPI_COMM_WORLD); |
74 |
+ |
|
75 |
+ |
sprintf( checkPointMsg, |
76 |
+ |
"Sucessfully opened and read spring file.\n"); |
77 |
+ |
MPIcheckPoint(); |
78 |
|
|
79 |
< |
springs.getline(inLine,999,'\n'); |
80 |
< |
springs.getline(inLine,999,'\n'); |
81 |
< |
token = strtok(inLine,jolt); |
82 |
< |
token = strtok(NULL,jolt); |
83 |
< |
strcpy(inValue,token); |
84 |
< |
kDist = (atof(inValue)); |
85 |
< |
springs.getline(inLine,999,'\n'); |
86 |
< |
token = strtok(inLine,jolt); |
87 |
< |
token = strtok(NULL,jolt); |
88 |
< |
strcpy(inValue,token); |
56 |
< |
kTheta = (atof(inValue)); |
57 |
< |
springs.getline(inLine,999,'\n'); |
58 |
< |
token = strtok(inLine,jolt); |
59 |
< |
token = strtok(NULL,jolt); |
60 |
< |
strcpy(inValue,token); |
61 |
< |
kOmega = (atof(inValue)); |
62 |
< |
springs.close(); |
63 |
< |
|
64 |
< |
cout << "The Spring Constants are:\n\tkDist = " << kDist << "\n\tkTheta = " << kTheta << "\n\tkOmega = " << kOmega << "\n"; |
79 |
> |
#endif // is_mpi |
80 |
> |
|
81 |
> |
sprintf(painCave.errMsg, |
82 |
> |
"The spring constants for thermodynamic integration are:\n" |
83 |
> |
"\tkDist = %lf\n" |
84 |
> |
"\tkTheta = %lf\n" |
85 |
> |
"\tkOmega = %lf\n", kDist, kTheta, kOmega); |
86 |
> |
painCave.severity = OOPSE_INFO; |
87 |
> |
painCave.isFatal = 0; |
88 |
> |
simError(); |
89 |
|
} |
90 |
|
|
91 |
|
Restraints::~Restraints(){ |