# | Line 14 | Line 14 | using namespace std; | |
---|---|---|
14 | ||
15 | #include "MatVec3.h" | |
16 | ||
17 | + | #include "ConstraintManager.hpp" |
18 | + | |
19 | #ifdef IS_MPI | |
20 | #include "mpiSimulation.hpp" | |
21 | #endif | |
# | Line 76 | Line 78 | SimInfo::SimInfo(){ | |
78 | ||
79 | ngroup = 0; | |
80 | ||
81 | + | consMan = NULL; |
82 | + | |
83 | wrapMeSimInfo( this ); | |
84 | } | |
85 | ||
# | Line 88 | Line 92 | SimInfo::~SimInfo(){ | |
92 | ||
93 | for(i = properties.begin(); i != properties.end(); i++) | |
94 | delete (*i).second; | |
95 | < | |
95 | > | |
96 | > | if (!consMan) |
97 | > | delete consMan; |
98 | } | |
99 | ||
100 | void SimInfo::setBox(double newBox[3]) { | |
# | Line 191 | Line 197 | void SimInfo::calcHmatInv( void ) { | |
197 | ||
198 | if( oldOrtho != orthoRhombic ){ | |
199 | ||
200 | < | if( orthoRhombic ){ |
200 | > | if( orthoRhombic ) { |
201 | sprintf( painCave.errMsg, | |
202 | "OOPSE is switching from the default Non-Orthorhombic\n" | |
203 | "\tto the faster Orthorhombic periodic boundary computations.\n" | |
# | Line 199 | Line 205 | void SimInfo::calcHmatInv( void ) { | |
205 | "\tNon-Orthorhombic computations, make the orthoBoxTolerance\n" | |
206 | "\tvariable ( currently set to %G ) smaller.\n", | |
207 | orthoTolerance); | |
208 | + | painCave.severity = OOPSE_INFO; |
209 | simError(); | |
210 | } | |
211 | else { | |
# | Line 210 | Line 217 | void SimInfo::calcHmatInv( void ) { | |
217 | "\tthe Orthorhombic computations, make the orthoBoxTolerance\n" | |
218 | "\tvariable ( currently set to %G ) larger.\n", | |
219 | orthoTolerance); | |
220 | + | painCave.severity = OOPSE_WARNING; |
221 | simError(); | |
222 | } | |
223 | } | |
# | Line 459 | Line 467 | void SimInfo::refreshSim(){ | |
467 | //Most of the compilers will organize the memory of vector continuously | |
468 | setFsimulation( &fInfo, &n_global, &n_atoms, identArray, &n_exclude, excl, | |
469 | &nGlobalExcludes, globalExcludes, molMembershipArray, | |
470 | < | &mfact[0], &ngroup, &FglobalGroupMembership[0], &isError); |
471 | < | |
470 | > | &mfact[0], &ngroup, &FglobalGroupMembership[0], &isError); |
471 | > | |
472 | if( isError ){ | |
473 | ||
474 | sprintf( painCave.errMsg, | |
475 | "There was an error setting the simulation information in fortran.\n" ); | |
476 | painCave.isFatal = 1; | |
477 | + | painCave.severity = OOPSE_ERROR; |
478 | simError(); | |
479 | } | |
480 | ||
# | Line 516 | Line 525 | void SimInfo::checkCutOffs( void ){ | |
525 | Hmat[0][0], Hmat[0][1], Hmat[0][2], | |
526 | Hmat[1][0], Hmat[1][1], Hmat[1][2], | |
527 | Hmat[2][0], Hmat[2][1], Hmat[2][2]); | |
528 | + | painCave.severity = OOPSE_ERROR; |
529 | painCave.isFatal = 1; | |
530 | simError(); | |
531 | } | |
# | Line 524 | Line 534 | void SimInfo::checkCutOffs( void ){ | |
534 | sprintf( painCave.errMsg, | |
535 | "Trying to check cutoffs without a box.\n" | |
536 | "\tOOPSE should have better programmers than that.\n" ); | |
537 | + | painCave.severity = OOPSE_ERROR; |
538 | painCave.isFatal = 1; | |
539 | simError(); | |
540 | } | |
# | Line 596 | Line 607 | void SimInfo::getFortranGroupArrays(SimInfo* info, | |
607 | #endif | |
608 | for (int i = 0; i < numAtom; i++) | |
609 | FglobalGroupMembership.push_back(globalGroupMembership[i] + 1); | |
610 | + | |
611 | ||
612 | myMols = info->molecules; | |
613 | numMol = info->n_mol; |
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