--- trunk/OOPSE/libmdtools/SimInfo.cpp	2004/04/19 22:13:01	1125
+++ trunk/OOPSE/libmdtools/SimInfo.cpp	2004/04/28 22:06:29	1139
@@ -63,6 +63,7 @@ SimInfo::SimInfo(){
   useReactionField = 0;
   useGB = 0;
   useEAM = 0;
+  useMolecularCutoffs = 0;
 
   excludes = Exclude::Instance();
 
@@ -348,8 +349,6 @@ int SimInfo::getNDF(){
   // entire system:
 
   ndf = ndf - 3 - nZconstraints;
-
-  std::cerr << "ndf = " << ndf;
 
   return ndf;
 }
@@ -438,6 +437,7 @@ void SimInfo::refreshSim(){
   //fInfo.SIM_uses_RF = 0;
   fInfo.SIM_uses_GB = useGB;
   fInfo.SIM_uses_EAM = useEAM;
+  fInfo.SIM_uses_molecular_cutoffs = useMolecularCutoffs;
 
   n_exclude = excludes->getSize();
   excl = excludes->getFortranArray();
@@ -512,11 +512,11 @@ void SimInfo::checkCutOffs( void ){
                "\tCurrent Value of LJrcut = %G at time %G\n "
                "\tThis is larger than half of at least one of the\n"
                "\tperiodic box vectors.  Right now, the Box matrix is:\n"
-               "\n, %G"
+	       "\n"
 	       "\t[ %G %G %G ]\n"
 	       "\t[ %G %G %G ]\n"
 	       "\t[ %G %G %G ]\n",
-	       rCut, currentTime, maxCutoff,
+	       rCut, currentTime,
 	       Hmat[0][0], Hmat[0][1], Hmat[0][2],
 	       Hmat[1][0], Hmat[1][1], Hmat[1][2],
 	       Hmat[2][0], Hmat[2][1], Hmat[2][2]);