# | Line 14 | Line 14 | |
---|---|---|
14 | ||
15 | // some defines for ensemble and Forcefield cases | |
16 | ||
17 | < | #define NVE_ENS 0 |
18 | < | #define NVT_ENS 1 |
19 | < | #define NPT_ENS 2 |
17 | > | #define NVE_ENS 0 |
18 | > | #define NVT_ENS 1 |
19 | > | #define NPTi_ENS 2 |
20 | > | #define NPTf_ENS 3 |
21 | > | #define NPTim_ENS 4 |
22 | > | #define NPTfm_ENS 5 |
23 | ||
24 | + | |
25 | #define FF_DUFF 0 | |
26 | #define FF_LJ 1 | |
27 | ||
# | Line 112 | Line 116 | void SimSetup::createSim( void ){ | |
116 | ||
117 | if( !strcasecmp( ensemble, "NVE" )) ensembleCase = NVE_ENS; | |
118 | else if( !strcasecmp( ensemble, "NVT" )) ensembleCase = NVT_ENS; | |
119 | < | else if( !strcasecmp( ensemble, "NPT" )) ensembleCase = NPT_ENS; |
119 | > | else if( !strcasecmp( ensemble, "NPTi" ) || !strcasecmp( ensemble, "NPT") ) |
120 | > | ensembleCase = NPTi_ENS; |
121 | > | else if( !strcasecmp( ensemble, "NPTf" )) ensembleCase = NPTf_ENS; |
122 | > | else if( !strcasecmp( ensemble, "NPTim" )) ensembleCase = NPTim_ENS; |
123 | > | else if( !strcasecmp( ensemble, "NPTfm" )) ensembleCase = NPTfm_ENS; |
124 | else{ | |
125 | sprintf( painCave.errMsg, | |
126 | "SimSetup Warning. Unrecognized Ensemble -> %s, " | |
# | Line 776 | Line 784 | void SimSetup::createSim( void ){ | |
784 | // make the integrator | |
785 | ||
786 | ||
787 | < | NVT* myNVT = NULL; |
787 | > | NVT* myNVT = NULL; |
788 | > | NPTi* myNPTi = NULL; |
789 | > | NPTf* myNPTf = NULL; |
790 | > | NPTim* myNPTim = NULL; |
791 | > | NPTfm* myNPTfm = NULL; |
792 | > | |
793 | switch( ensembleCase ){ | |
794 | ||
795 | case NVE_ENS: | |
# | Line 789 | Line 802 | void SimSetup::createSim( void ){ | |
802 | ||
803 | if (the_globals->haveTauThermostat()) | |
804 | myNVT->setTauThermostat(the_globals->getTauThermostat()); | |
805 | < | // else if (the_globals->haveQmass()) |
793 | < | // myNVT->setQmass(the_globals->getQmass()); |
805 | > | |
806 | else { | |
807 | sprintf( painCave.errMsg, | |
808 | "SimSetup error: If you use the NVT\n" | |
809 | < | " ensemble, you must set either tauThermostat or qMass.\n" |
810 | < | " Neither of these was found in the BASS file.\n"); |
809 | > | " ensemble, you must set tauThermostat.\n"); |
810 | > | painCave.isFatal = 1; |
811 | > | simError(); |
812 | > | } |
813 | > | break; |
814 | > | |
815 | > | case NPTi_ENS: |
816 | > | myNPTi = new NPTi( simnfo, the_ff ); |
817 | > | myNPTi->setTargetTemp( the_globals->getTargetTemp()); |
818 | > | |
819 | > | if (the_globals->haveTargetPressure()) |
820 | > | myNPTi->setTargetPressure(the_globals->getTargetPressure()); |
821 | > | else { |
822 | > | sprintf( painCave.errMsg, |
823 | > | "SimSetup error: If you use a constant pressure\n" |
824 | > | " ensemble, you must set targetPressure in the BASS file.\n"); |
825 | painCave.isFatal = 1; | |
826 | simError(); | |
827 | } | |
828 | + | |
829 | + | if( the_globals->haveTauThermostat() ) |
830 | + | myNPTi->setTauThermostat( the_globals->getTauThermostat() ); |
831 | + | else{ |
832 | + | sprintf( painCave.errMsg, |
833 | + | "SimSetup error: If you use an NPT\n" |
834 | + | " ensemble, you must set tauThermostat.\n"); |
835 | + | painCave.isFatal = 1; |
836 | + | simError(); |
837 | + | } |
838 | + | |
839 | + | if( the_globals->haveTauBarostat() ) |
840 | + | myNPTi->setTauBarostat( the_globals->getTauBarostat() ); |
841 | + | else{ |
842 | + | sprintf( painCave.errMsg, |
843 | + | "SimSetup error: If you use an NPT\n" |
844 | + | " ensemble, you must set tauBarostat.\n"); |
845 | + | painCave.isFatal = 1; |
846 | + | simError(); |
847 | + | } |
848 | break; | |
849 | ||
850 | + | case NPTf_ENS: |
851 | + | myNPTf = new NPTf( simnfo, the_ff ); |
852 | + | myNPTf->setTargetTemp( the_globals->getTargetTemp()); |
853 | + | |
854 | + | if (the_globals->haveTargetPressure()) |
855 | + | myNPTf->setTargetPressure(the_globals->getTargetPressure()); |
856 | + | else { |
857 | + | sprintf( painCave.errMsg, |
858 | + | "SimSetup error: If you use a constant pressure\n" |
859 | + | " ensemble, you must set targetPressure in the BASS file.\n"); |
860 | + | painCave.isFatal = 1; |
861 | + | simError(); |
862 | + | } |
863 | + | |
864 | + | if( the_globals->haveTauThermostat() ) |
865 | + | myNPTf->setTauThermostat( the_globals->getTauThermostat() ); |
866 | + | else{ |
867 | + | sprintf( painCave.errMsg, |
868 | + | "SimSetup error: If you use an NPT\n" |
869 | + | " ensemble, you must set tauThermostat.\n"); |
870 | + | painCave.isFatal = 1; |
871 | + | simError(); |
872 | + | } |
873 | + | |
874 | + | if( the_globals->haveTauBarostat() ) |
875 | + | myNPTf->setTauBarostat( the_globals->getTauBarostat() ); |
876 | + | else{ |
877 | + | sprintf( painCave.errMsg, |
878 | + | "SimSetup error: If you use an NPT\n" |
879 | + | " ensemble, you must set tauBarostat.\n"); |
880 | + | painCave.isFatal = 1; |
881 | + | simError(); |
882 | + | } |
883 | + | break; |
884 | + | |
885 | + | case NPTim_ENS: |
886 | + | myNPTim = new NPTim( simnfo, the_ff ); |
887 | + | myNPTim->setTargetTemp( the_globals->getTargetTemp()); |
888 | + | |
889 | + | if (the_globals->haveTargetPressure()) |
890 | + | myNPTim->setTargetPressure(the_globals->getTargetPressure()); |
891 | + | else { |
892 | + | sprintf( painCave.errMsg, |
893 | + | "SimSetup error: If you use a constant pressure\n" |
894 | + | " ensemble, you must set targetPressure in the BASS file.\n"); |
895 | + | painCave.isFatal = 1; |
896 | + | simError(); |
897 | + | } |
898 | + | |
899 | + | if( the_globals->haveTauThermostat() ) |
900 | + | myNPTim->setTauThermostat( the_globals->getTauThermostat() ); |
901 | + | else{ |
902 | + | sprintf( painCave.errMsg, |
903 | + | "SimSetup error: If you use an NPT\n" |
904 | + | " ensemble, you must set tauThermostat.\n"); |
905 | + | painCave.isFatal = 1; |
906 | + | simError(); |
907 | + | } |
908 | + | |
909 | + | if( the_globals->haveTauBarostat() ) |
910 | + | myNPTim->setTauBarostat( the_globals->getTauBarostat() ); |
911 | + | else{ |
912 | + | sprintf( painCave.errMsg, |
913 | + | "SimSetup error: If you use an NPT\n" |
914 | + | " ensemble, you must set tauBarostat.\n"); |
915 | + | painCave.isFatal = 1; |
916 | + | simError(); |
917 | + | } |
918 | + | break; |
919 | + | |
920 | + | case NPTfm_ENS: |
921 | + | myNPTfm = new NPTfm( simnfo, the_ff ); |
922 | + | myNPTfm->setTargetTemp( the_globals->getTargetTemp()); |
923 | + | |
924 | + | if (the_globals->haveTargetPressure()) |
925 | + | myNPTfm->setTargetPressure(the_globals->getTargetPressure()); |
926 | + | else { |
927 | + | sprintf( painCave.errMsg, |
928 | + | "SimSetup error: If you use a constant pressure\n" |
929 | + | " ensemble, you must set targetPressure in the BASS file.\n"); |
930 | + | painCave.isFatal = 1; |
931 | + | simError(); |
932 | + | } |
933 | + | |
934 | + | if( the_globals->haveTauThermostat() ) |
935 | + | myNPTfm->setTauThermostat( the_globals->getTauThermostat() ); |
936 | + | else{ |
937 | + | sprintf( painCave.errMsg, |
938 | + | "SimSetup error: If you use an NPT\n" |
939 | + | " ensemble, you must set tauThermostat.\n"); |
940 | + | painCave.isFatal = 1; |
941 | + | simError(); |
942 | + | } |
943 | + | |
944 | + | if( the_globals->haveTauBarostat() ) |
945 | + | myNPTfm->setTauBarostat( the_globals->getTauBarostat() ); |
946 | + | else{ |
947 | + | sprintf( painCave.errMsg, |
948 | + | "SimSetup error: If you use an NPT\n" |
949 | + | " ensemble, you must set tauBarostat.\n"); |
950 | + | painCave.isFatal = 1; |
951 | + | simError(); |
952 | + | } |
953 | + | break; |
954 | + | |
955 | default: | |
956 | sprintf( painCave.errMsg, | |
957 | "SimSetup Error. Unrecognized ensemble in case statement.\n"); |
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