--- trunk/OOPSE/libmdtools/SimSetup.cpp	2003/08/12 17:51:33	682
+++ trunk/OOPSE/libmdtools/SimSetup.cpp	2003/08/12 19:56:49	689
@@ -5,6 +5,7 @@
 #include <string>
 
 #include "SimSetup.hpp"
+#include "ReadWrite.hpp"
 #include "parse_me.h"
 #include "Integrator.hpp"
 #include "simError.h"
@@ -96,18 +97,26 @@ void SimSetup::createSim(void){
   int i, j, k, globalAtomIndex;
   
   // gather all of the information from the Bass file
-  
+
+  std::cerr << "gathering info\n";
+
   gatherInfo();
 
   // creation of complex system objects
 
+  std::cerr << "creating system objects\n";
+
   sysObjectsCreation();
 
   // check on the post processing info
   
+  std::cerr << "performing final info check.\n";
+
   finalInfoCheck();
 
   // initialize the system coordinates
+
+  std::cerr << "about to init coords\n";
 
   if( !isInfoArray ) initSystemCoords();  
 
@@ -888,6 +897,8 @@ void SimSetup::initSystemCoords( void ){
 void SimSetup::initSystemCoords( void ){
   int i;
   
+  char* inName;
+
   std::cerr << "Setting atom Coords\n";
 
   (info[0].getConfiguration())->createArrays( info[0].n_atoms );
@@ -900,7 +911,8 @@ void SimSetup::initSystemCoords( void ){
 #ifdef IS_MPI // is_mpi
     if( worldRank == 0 ){
 #endif //is_mpi
-      fileInit = new InitializeFromFile( globals->getInitialConfig() );
+      inName = globals->getInitialConfig();
+      fileInit = new InitializeFromFile( inName );
 #ifdef IS_MPI
     }else fileInit = new InitializeFromFile( NULL );
 #endif
@@ -1033,7 +1045,7 @@ void SimSetup::sysObjectsCreation( void ){
   int i,k;
   
   // create the forceField
-  
+
   createFF();
 
   // extract componentList
@@ -1051,11 +1063,11 @@ void SimSetup::sysObjectsCreation( void ){
 #endif //is_mpi
   
   // create the atom and SRI arrays. Also initialize Molecule Stamp ID's
-  
+ 
   makeSysArrays();
 
   // make and initialize the molecules (all but atomic coordinates)
-  
+ 
   makeMolecules();
   
   for(k=0; k<nInfo; k++){