--- trunk/OOPSE/libmdtools/SimSetup.hpp	2003/07/15 17:57:04	614
+++ trunk/OOPSE/libmdtools/SimSetup.hpp	2003/07/15 18:52:16	616
@@ -16,7 +16,7 @@ class SimSetup{ (public)
   SimSetup();
   ~SimSetup();
 
-  void setSimInfo( SimInfo* the_simnfo ) { simnfo = the_simnfo; }
+  void setSimInfo( SimInfo* the_info ) { info = the_info; }
   void parseFile( char* fileName );
   void createSim( void );
 
@@ -32,6 +32,8 @@ class SimSetup{ (public)
   void finalInfoCheck( void );
   void initSystemCoords( void );
   void makeOutNames(void);
+  void makeIntegrator(void);
+  void initFortran(void);
 
   void createFF( void );
   void compList( void );
@@ -61,6 +63,7 @@ class SimSetup{ (public)
   SimInfo* info;
 
   int n_components;
+  int globalAtomIndex;
 
   char force_field[100];
   char ensemble[100];