--- trunk/OOPSE/libmdtools/Thermo.cpp 2003/04/08 15:20:44 479 +++ trunk/OOPSE/libmdtools/Thermo.cpp 2003/04/09 04:06:43 483 @@ -134,16 +134,32 @@ double Thermo::getPressure(){ return temperature; } -double Thermo::getPressure(){ - // returns pressure in units amu*fs^-2*Ang^-1 +double Thermo::getPressure() { + // returns the pressure in units of atm + // Relies on the calculation of the full molecular pressure tensor + + const double p_convert = 1.63882576e8; + double press[9]; + double pressure; + + this->getPressureTensor(press); + + pressure = p_convert * (press[0] + press[4] + press[8]) / 3.0; + + return pressure; +} + + +void Thermo::getPressureTensor(double press[9]){ + // returns pressure tensor in units amu*fs^-2*Ang^-1 // routine derived via viral theorem description in: // Paci, E. and Marchi, M. J.Phys.Chem. 1996, 100, 4314-4322 const double e_convert = 4.184e-4; - const double p_convert = 1.63882576e8; - double molmass; + + double molmass, volume; double vcom[3]; - double p_local, p_sum, p_mol, virial; + double p_local[9], p_global[9]; double theBox[3]; double* tau; int i, nMols; @@ -154,28 +170,42 @@ double Thermo::getPressure(){ tau = entry_plug->tau; // use velocities of molecular centers of mass and molecular masses: - p_local = 0.0; + for (i=0; i < 9; i++) { + p_local[i] = 0.0; + p_global[i] = 0.0; + } for (i=0; i < nMols; i++) { molmass = molecules[i].getCOMvel(vcom); - p_local += (vcom[0]*vcom[0] + vcom[1]*vcom[1] + vcom[2]*vcom[2]) * molmass; + + p_local[0] += molmass * (vcom[0] * vcom[0]); + p_local[1] += molmass * (vcom[0] * vcom[1]); + p_local[2] += molmass * (vcom[0] * vcom[2]); + p_local[3] += molmass * (vcom[1] * vcom[0]); + p_local[4] += molmass * (vcom[1] * vcom[1]); + p_local[5] += molmass * (vcom[1] * vcom[2]); + p_local[6] += molmass * (vcom[2] * vcom[0]); + p_local[7] += molmass * (vcom[2] * vcom[1]); + p_local[8] += molmass * (vcom[2] * vcom[2]); } // Get total for entire system from MPI. #ifdef IS_MPI - MPI_Allreduce(&p_local,&p_sum,1,MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); + MPI_Allreduce(p_local,p_global,9,MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); #else - p_sum = p_local; + for (i=0; i<9; i++) { + p_global[i] = p_local[i]; + } #endif // is_mpi - virial = tau[0] + tau[4] + tau[8]; entry_plug->getBox(theBox); - p_mol = p_convert * (p_sum - virial*e_convert) / - (3.0 * theBox[0] * theBox[1]* theBox[2]); + volume = theBox[0] * theBox[1] * theBox[2]; - return p_mol; + for(i=0; i<9; i++) { + press[i] = (p_global[i] - tau[i]*e_convert) / volume; + } } void Thermo::velocitize() {