fixes for NVT
dt/2 fix in nvt
Changes to integrate the NVT and NPT ensembles
Many fixes to add extended system
Changes for Extended System
changes for extended system code
fixed some small things with simError.h
Added NVT file (very broken for now)
Changed Readme, added some files
Fixes in MPI force calc and in Trappe_Ex parsing.
fixed the compile time bugs, Source builds and links
I have implemeted Molecules everywhere I could remember to. will now attempt to compile.
Fixes for Parallel thermalization
fixed an mpi include bug in THermo.cpp
Fixed bugs with calculation of potential energy and temperature.
This commit was generated by cvs2svn to compensate for changes in r377, which included commits to RCS files with non-trunk default branches.
New OOPSE Tree
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