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root/group/trunk/OOPSE/libmdtools/calc_LJ_FF.F90
Revision: 1217
Committed: Tue Jun 1 21:45:22 2004 UTC (20 years, 1 month ago) by gezelter
File size: 9118 byte(s)
Log Message:
Bug fix (fixes of skipList and neighbor list under MPI)

File Contents

# User Rev Content
1 mmeineke 377 !! Calculates Long Range forces Lennard-Jones interactions.
2     !! Corresponds to the force field defined in lj_FF.cpp
3     !! @author Charles F. Vardeman II
4     !! @author Matthew Meineke
5 gezelter 1217 !! @version $Id: calc_LJ_FF.F90,v 1.22 2004-06-01 21:45:22 gezelter Exp $, $Date: 2004-06-01 21:45:22 $, $Name: not supported by cvs2svn $, $Revision: 1.22 $
6 mmeineke 377
7     module lj
8     use definitions
9     use atype_module
10 gezelter 1150 use switcheroo
11 mmeineke 377 use vector_class
12 chuckv 460 use simulation
13 mmeineke 377 #ifdef IS_MPI
14     use mpiSimulation
15     #endif
16     use force_globals
17    
18     implicit none
19     PRIVATE
20    
21     #define __FORTRAN90
22     #include "fForceField.h"
23    
24     integer, save :: LJ_Mixing_Policy
25 mmeineke 619 real(kind=DP), save :: LJ_rcut
26 gezelter 1160 logical, save :: havePolicy = .false.
27     logical, save :: haveCut = .false.
28     logical, save :: LJ_do_shift = .false.
29 mmeineke 377
30     !! Logical has lj force field module been initialized?
31    
32     logical, save :: LJ_FF_initialized = .false.
33    
34     !! Public methods and data
35     public :: init_LJ_FF
36 mmeineke 626 public :: setCutoffLJ
37 mmeineke 377 public :: do_lj_pair
38    
39     type :: lj_mixed_params
40     !! Lennard-Jones epsilon
41     real ( kind = dp ) :: epsilon = 0.0_dp
42     !! Lennard-Jones Sigma
43     real ( kind = dp ) :: sigma = 0.0_dp
44     !! Lennard-Jones Sigma to sixth
45     real ( kind = dp ) :: sigma6 = 0.0_dp
46     !!
47     real ( kind = dp ) :: tp6
48     real ( kind = dp ) :: tp12
49     real ( kind = dp ) :: delta = 0.0_dp
50     end type lj_mixed_params
51    
52     type (lj_mixed_params), dimension(:,:), pointer :: ljMixed
53    
54     contains
55    
56 mmeineke 626 subroutine init_LJ_FF(mix_Policy, status)
57 mmeineke 377 integer, intent(in) :: mix_Policy
58     integer, intent(out) :: status
59     integer :: myStatus
60    
61 gezelter 834 if (mix_Policy == LB_MIXING_RULE) then
62     LJ_Mixing_Policy = LB_MIXING_RULE
63 mmeineke 377 else
64 gezelter 834 if (mix_Policy == EXPLICIT_MIXING_RULE) then
65     LJ_Mixing_Policy = EXPLICIT_MIXING_RULE
66 mmeineke 377 else
67     write(*,*) 'Unknown Mixing Policy!'
68     status = -1
69     return
70     endif
71     endif
72    
73 mmeineke 626 havePolicy = .true.
74    
75     if (haveCut) then
76     status = 0
77     call createMixingList(myStatus)
78     if (myStatus /= 0) then
79     status = -1
80     return
81     end if
82    
83     LJ_FF_initialized = .true.
84 mmeineke 377 end if
85 mmeineke 626
86 mmeineke 377 end subroutine init_LJ_FF
87    
88 gezelter 1160 subroutine setCutoffLJ(rcut, do_shift, status)
89     logical, intent(in):: do_shift
90 mmeineke 377 integer :: status, myStatus
91     real(kind=dp) :: rcut
92 gezelter 1150
93     #define __FORTRAN90
94     #include "fSwitchingFunction.h"
95    
96 mmeineke 377 status = 0
97    
98 chrisfen 1041 LJ_rcut = rcut
99 gezelter 1160 LJ_do_shift = do_shift
100 gezelter 1150 call set_switch(LJ_SWITCH, rcut, rcut)
101 mmeineke 626 haveCut = .true.
102    
103     if (havePolicy) then
104     status = 0
105 mmeineke 619 call createMixingList(myStatus)
106     if (myStatus /= 0) then
107     status = -1
108     return
109     end if
110 mmeineke 626
111     LJ_FF_initialized = .true.
112     end if
113 mmeineke 619
114 mmeineke 377 return
115 mmeineke 626 end subroutine setCutoffLJ
116 mmeineke 377
117     subroutine createMixingList(status)
118     integer :: nAtypes
119     integer :: status
120     integer :: i
121     integer :: j
122     real ( kind = dp ) :: mySigma_i,mySigma_j
123     real ( kind = dp ) :: myEpsilon_i,myEpsilon_j
124     real ( kind = dp ) :: rcut6
125 gezelter 1217 logical :: I_isLJ, J_isLJ
126 mmeineke 377 status = 0
127    
128     nAtypes = getSize(atypes)
129     if (nAtypes == 0) then
130     status = -1
131     return
132     end if
133    
134     if (.not. associated(ljMixed)) then
135     allocate(ljMixed(nAtypes, nAtypes))
136 chuckv 623 endif
137 mmeineke 377
138     rcut6 = LJ_rcut**6
139    
140 chuckv 900 ! This loops through all atypes, even those that don't support LJ forces.
141 mmeineke 377 do i = 1, nAtypes
142    
143 gezelter 1217 call getElementProperty(atypes, i, "is_LJ", I_isLJ)
144 mmeineke 377
145 gezelter 1217 if (I_isLJ) then
146 mmeineke 790
147 gezelter 1217 call getElementProperty(atypes, i, "lj_epsilon", myEpsilon_i)
148     call getElementProperty(atypes, i, "lj_sigma", mySigma_i)
149     ! do self mixing rule
150     ljMixed(i,i)%sigma = mySigma_i
151 mmeineke 377
152 gezelter 1217 ljMixed(i,i)%sigma6 = (ljMixed(i,i)%sigma) ** 6
153 mmeineke 377
154 gezelter 1217 ljMixed(i,i)%tp6 = (ljMixed(i,i)%sigma6)/rcut6
155 mmeineke 377
156 gezelter 1217 ljMixed(i,i)%tp12 = (ljMixed(i,i)%tp6) ** 2
157 mmeineke 377
158    
159 gezelter 1217 ljMixed(i,i)%epsilon = myEpsilon_i
160 mmeineke 377
161 gezelter 1217 ljMixed(i,i)%delta = -4.0_DP * ljMixed(i,i)%epsilon * &
162     (ljMixed(i,i)%tp12 - ljMixed(i,i)%tp6)
163 mmeineke 377
164 gezelter 1217 do j = i + 1, nAtypes
165    
166     call getElementProperty(atypes, j, "is_LJ", J_isLJ)
167    
168     if (J_isLJ) then
169    
170     call getElementProperty(atypes,j,"lj_epsilon",myEpsilon_j)
171     call getElementProperty(atypes,j,"lj_sigma", mySigma_j)
172    
173     ljMixed(i,j)%sigma = &
174     calcLJMix("sigma",mySigma_i, &
175     mySigma_j)
176    
177     ljMixed(i,j)%sigma6 = &
178     (ljMixed(i,j)%sigma)**6
179    
180    
181     ljMixed(i,j)%tp6 = ljMixed(i,j)%sigma6/rcut6
182    
183     ljMixed(i,j)%tp12 = (ljMixed(i,j)%tp6) ** 2
184    
185    
186     ljMixed(i,j)%epsilon = &
187     calcLJMix("epsilon",myEpsilon_i, &
188     myEpsilon_j)
189    
190     ljMixed(i,j)%delta = -4.0_DP * ljMixed(i,j)%epsilon * &
191     (ljMixed(i,j)%tp12 - ljMixed(i,j)%tp6)
192    
193    
194     ljMixed(j,i)%sigma = ljMixed(i,j)%sigma
195     ljMixed(j,i)%sigma6 = ljMixed(i,j)%sigma6
196     ljMixed(j,i)%tp6 = ljMixed(i,j)%tp6
197     ljMixed(j,i)%tp12 = ljMixed(i,j)%tp12
198     ljMixed(j,i)%epsilon = ljMixed(i,j)%epsilon
199     ljMixed(j,i)%delta = ljMixed(i,j)%delta
200     endif
201     end do
202     endif
203 mmeineke 377 end do
204    
205     end subroutine createMixingList
206    
207 gezelter 1192 subroutine do_lj_pair(atom1, atom2, d, rij, r2, sw, vpair, fpair, &
208     pot, f, do_pot)
209 mmeineke 377
210     integer, intent(in) :: atom1, atom2
211     real( kind = dp ), intent(in) :: rij, r2
212 gezelter 1150 real( kind = dp ) :: pot, sw, vpair
213 chuckv 898 real( kind = dp ), dimension(3,nLocal) :: f
214 mmeineke 377 real( kind = dp ), intent(in), dimension(3) :: d
215 gezelter 1192 real( kind = dp ), intent(inout), dimension(3) :: fpair
216     logical, intent(in) :: do_pot
217 mmeineke 377
218     ! local Variables
219     real( kind = dp ) :: drdx, drdy, drdz
220     real( kind = dp ) :: fx, fy, fz
221     real( kind = dp ) :: pot_temp, dudr
222     real( kind = dp ) :: sigma6
223     real( kind = dp ) :: epsilon
224     real( kind = dp ) :: r6
225     real( kind = dp ) :: t6
226     real( kind = dp ) :: t12
227     real( kind = dp ) :: delta
228 gezelter 490 integer :: id1, id2
229 mmeineke 377
230 gezelter 1160 ! Look up the correct parameters in the mixing matrix
231 mmeineke 377 #ifdef IS_MPI
232 gezelter 1160 sigma6 = ljMixed(atid_Row(atom1),atid_Col(atom2))%sigma6
233     epsilon = ljMixed(atid_Row(atom1),atid_Col(atom2))%epsilon
234     delta = ljMixed(atid_Row(atom1),atid_Col(atom2))%delta
235 mmeineke 377 #else
236 gezelter 1160 sigma6 = ljMixed(atid(atom1),atid(atom2))%sigma6
237     epsilon = ljMixed(atid(atom1),atid(atom2))%epsilon
238     delta = ljMixed(atid(atom1),atid(atom2))%delta
239 mmeineke 377 #endif
240 gezelter 1160
241     r6 = r2 * r2 * r2
242    
243     t6 = sigma6/ r6
244     t12 = t6 * t6
245    
246     pot_temp = 4.0E0_DP * epsilon * (t12 - t6)
247     if (LJ_do_shift) then
248     pot_temp = pot_temp + delta
249     endif
250    
251     vpair = vpair + pot_temp
252 mmeineke 377
253 gezelter 1160 dudr = sw * 24.0E0_DP * epsilon * (t6 - 2.0E0_DP*t12) / rij
254 mmeineke 377
255 gezelter 1160 drdx = d(1) / rij
256     drdy = d(2) / rij
257     drdz = d(3) / rij
258 mmeineke 377
259 gezelter 1160 fx = dudr * drdx
260     fy = dudr * drdy
261     fz = dudr * drdz
262    
263 mmeineke 377
264     #ifdef IS_MPI
265 gezelter 1160 if (do_pot) then
266     pot_Row(atom1) = pot_Row(atom1) + sw*pot_temp*0.5
267     pot_Col(atom2) = pot_Col(atom2) + sw*pot_temp*0.5
268     endif
269    
270     f_Row(1,atom1) = f_Row(1,atom1) + fx
271     f_Row(2,atom1) = f_Row(2,atom1) + fy
272     f_Row(3,atom1) = f_Row(3,atom1) + fz
273    
274     f_Col(1,atom2) = f_Col(1,atom2) - fx
275     f_Col(2,atom2) = f_Col(2,atom2) - fy
276     f_Col(3,atom2) = f_Col(3,atom2) - fz
277    
278 mmeineke 377 #else
279 gezelter 1160 if (do_pot) pot = pot + sw*pot_temp
280 mmeineke 377
281 gezelter 1160 f(1,atom1) = f(1,atom1) + fx
282     f(2,atom1) = f(2,atom1) + fy
283     f(3,atom1) = f(3,atom1) + fz
284    
285     f(1,atom2) = f(1,atom2) - fx
286     f(2,atom2) = f(2,atom2) - fy
287     f(3,atom2) = f(3,atom2) - fz
288 mmeineke 377 #endif
289 gezelter 1192
290 gezelter 490 #ifdef IS_MPI
291 tim 1198 id1 = AtomRowToGlobal(atom1)
292     id2 = AtomColToGlobal(atom2)
293 gezelter 490 #else
294 gezelter 1192 id1 = atom1
295     id2 = atom2
296 gezelter 490 #endif
297 gezelter 1192
298     if (molMembershipList(id1) .ne. molMembershipList(id2)) then
299 gezelter 1160
300 gezelter 1192 fpair(1) = fpair(1) + fx
301     fpair(2) = fpair(2) + fy
302     fpair(3) = fpair(3) + fz
303    
304 mmeineke 377 endif
305 gezelter 1192
306 mmeineke 377 return
307 gezelter 1160
308 mmeineke 377 end subroutine do_lj_pair
309 gezelter 1160
310    
311 mmeineke 377 !! Calculates the mixing for sigma or epslon
312 gezelter 1160
313 mmeineke 377 function calcLJMix(thisParam,param1,param2,status) result(myMixParam)
314     character(len=*) :: thisParam
315     real(kind = dp) :: param1
316     real(kind = dp) :: param2
317     real(kind = dp ) :: myMixParam
318    
319     integer, optional :: status
320    
321     myMixParam = 0.0_dp
322    
323     if (present(status)) status = 0
324     select case (LJ_Mixing_Policy)
325 gezelter 829 case (1)
326 mmeineke 377 select case (thisParam)
327     case ("sigma")
328     myMixParam = 0.5_dp * (param1 + param2)
329     case ("epsilon")
330     myMixParam = sqrt(param1 * param2)
331     case default
332     status = -1
333     end select
334     case default
335     status = -1
336     end select
337     end function calcLJMix
338    
339     end module lj