2 |
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!! Corresponds to the force field defined in lj_FF.cpp |
3 |
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!! @author Charles F. Vardeman II |
4 |
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!! @author Matthew Meineke |
5 |
< |
!! @version $Id: calc_LJ_FF.F90,v 1.14 2004-01-05 22:49:14 chuckv Exp $, $Date: 2004-01-05 22:49:14 $, $Name: not supported by cvs2svn $, $Revision: 1.14 $ |
5 |
> |
!! @version $Id: calc_LJ_FF.F90,v 1.22 2004-06-01 21:45:22 gezelter Exp $, $Date: 2004-06-01 21:45:22 $, $Name: not supported by cvs2svn $, $Revision: 1.22 $ |
6 |
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|
7 |
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module lj |
8 |
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use definitions |
9 |
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use atype_module |
10 |
+ |
use switcheroo |
11 |
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use vector_class |
12 |
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use simulation |
13 |
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#ifdef IS_MPI |
23 |
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|
24 |
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integer, save :: LJ_Mixing_Policy |
25 |
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real(kind=DP), save :: LJ_rcut |
26 |
< |
logical, save :: havePolicy = .false., haveCut = .false. |
27 |
< |
|
26 |
> |
logical, save :: havePolicy = .false. |
27 |
> |
logical, save :: haveCut = .false. |
28 |
> |
logical, save :: LJ_do_shift = .false. |
29 |
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|
30 |
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!! Logical has lj force field module been initialized? |
31 |
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|
46 |
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!! |
47 |
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real ( kind = dp ) :: tp6 |
48 |
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real ( kind = dp ) :: tp12 |
47 |
– |
|
49 |
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real ( kind = dp ) :: delta = 0.0_dp |
49 |
– |
|
50 |
– |
|
50 |
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end type lj_mixed_params |
51 |
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|
52 |
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type (lj_mixed_params), dimension(:,:), pointer :: ljMixed |
85 |
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|
86 |
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end subroutine init_LJ_FF |
87 |
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|
88 |
< |
subroutine setCutoffLJ(rcut, status) |
88 |
> |
subroutine setCutoffLJ(rcut, do_shift, status) |
89 |
> |
logical, intent(in):: do_shift |
90 |
|
integer :: status, myStatus |
91 |
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real(kind=dp) :: rcut |
92 |
< |
|
92 |
> |
|
93 |
> |
#define __FORTRAN90 |
94 |
> |
#include "fSwitchingFunction.h" |
95 |
> |
|
96 |
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status = 0 |
97 |
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|
98 |
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LJ_rcut = rcut |
99 |
+ |
LJ_do_shift = do_shift |
100 |
+ |
call set_switch(LJ_SWITCH, rcut, rcut) |
101 |
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haveCut = .true. |
102 |
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|
103 |
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if (havePolicy) then |
122 |
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real ( kind = dp ) :: mySigma_i,mySigma_j |
123 |
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real ( kind = dp ) :: myEpsilon_i,myEpsilon_j |
124 |
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real ( kind = dp ) :: rcut6 |
125 |
+ |
logical :: I_isLJ, J_isLJ |
126 |
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status = 0 |
127 |
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|
128 |
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nAtypes = getSize(atypes) |
137 |
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|
138 |
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rcut6 = LJ_rcut**6 |
139 |
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|
140 |
+ |
! This loops through all atypes, even those that don't support LJ forces. |
141 |
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do i = 1, nAtypes |
142 |
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|
143 |
< |
call getElementProperty(atypes, i, "lj_epsilon", myEpsilon_i) |
137 |
< |
call getElementProperty(atypes, i, "lj_sigma", mySigma_i) |
138 |
< |
! do self mixing rule |
139 |
< |
ljMixed(i,i)%sigma = mySigma_i |
140 |
< |
|
141 |
< |
ljMixed(i,i)%sigma6 = (ljMixed(i,i)%sigma) ** 6 |
143 |
> |
call getElementProperty(atypes, i, "is_LJ", I_isLJ) |
144 |
|
|
145 |
< |
ljMixed(i,i)%tp6 = (ljMixed(i,i)%sigma6)/rcut6 |
145 |
> |
if (I_isLJ) then |
146 |
|
|
147 |
< |
ljMixed(i,i)%tp12 = (ljMixed(i,i)%tp6) ** 2 |
148 |
< |
|
149 |
< |
|
150 |
< |
ljMixed(i,i)%epsilon = myEpsilon_i |
149 |
< |
|
150 |
< |
ljMixed(i,i)%delta = -4.0_DP * ljMixed(i,i)%epsilon * & |
151 |
< |
(ljMixed(i,i)%tp12 - ljMixed(i,i)%tp6) |
152 |
< |
|
153 |
< |
do j = i + 1, nAtypes |
154 |
< |
call getElementProperty(atypes,j,"lj_epsilon",myEpsilon_j) |
155 |
< |
call getElementProperty(atypes,j,"lj_sigma", mySigma_j) |
147 |
> |
call getElementProperty(atypes, i, "lj_epsilon", myEpsilon_i) |
148 |
> |
call getElementProperty(atypes, i, "lj_sigma", mySigma_i) |
149 |
> |
! do self mixing rule |
150 |
> |
ljMixed(i,i)%sigma = mySigma_i |
151 |
|
|
152 |
< |
ljMixed(i,j)%sigma = & |
158 |
< |
calcLJMix("sigma",mySigma_i, & |
159 |
< |
mySigma_j) |
152 |
> |
ljMixed(i,i)%sigma6 = (ljMixed(i,i)%sigma) ** 6 |
153 |
|
|
154 |
< |
ljMixed(i,j)%sigma6 = & |
162 |
< |
(ljMixed(i,j)%sigma)**6 |
154 |
> |
ljMixed(i,i)%tp6 = (ljMixed(i,i)%sigma6)/rcut6 |
155 |
|
|
156 |
+ |
ljMixed(i,i)%tp12 = (ljMixed(i,i)%tp6) ** 2 |
157 |
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|
165 |
– |
ljMixed(i,j)%tp6 = ljMixed(i,j)%sigma6/rcut6 |
158 |
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|
159 |
< |
ljMixed(i,j)%tp12 = (ljMixed(i,j)%tp6) ** 2 |
159 |
> |
ljMixed(i,i)%epsilon = myEpsilon_i |
160 |
|
|
161 |
+ |
ljMixed(i,i)%delta = -4.0_DP * ljMixed(i,i)%epsilon * & |
162 |
+ |
(ljMixed(i,i)%tp12 - ljMixed(i,i)%tp6) |
163 |
|
|
164 |
< |
ljMixed(i,j)%epsilon = & |
165 |
< |
calcLJMix("epsilon",myEpsilon_i, & |
166 |
< |
myEpsilon_j) |
167 |
< |
|
168 |
< |
ljMixed(i,j)%delta = -4.0_DP * ljMixed(i,j)%epsilon * & |
169 |
< |
(ljMixed(i,j)%tp12 - ljMixed(i,j)%tp6) |
170 |
< |
|
171 |
< |
|
172 |
< |
ljMixed(j,i)%sigma = ljMixed(i,j)%sigma |
173 |
< |
ljMixed(j,i)%sigma6 = ljMixed(i,j)%sigma6 |
174 |
< |
ljMixed(j,i)%tp6 = ljMixed(i,j)%tp6 |
175 |
< |
ljMixed(j,i)%tp12 = ljMixed(i,j)%tp12 |
176 |
< |
ljMixed(j,i)%epsilon = ljMixed(i,j)%epsilon |
177 |
< |
ljMixed(j,i)%delta = ljMixed(i,j)%delta |
178 |
< |
|
179 |
< |
end do |
164 |
> |
do j = i + 1, nAtypes |
165 |
> |
|
166 |
> |
call getElementProperty(atypes, j, "is_LJ", J_isLJ) |
167 |
> |
|
168 |
> |
if (J_isLJ) then |
169 |
> |
|
170 |
> |
call getElementProperty(atypes,j,"lj_epsilon",myEpsilon_j) |
171 |
> |
call getElementProperty(atypes,j,"lj_sigma", mySigma_j) |
172 |
> |
|
173 |
> |
ljMixed(i,j)%sigma = & |
174 |
> |
calcLJMix("sigma",mySigma_i, & |
175 |
> |
mySigma_j) |
176 |
> |
|
177 |
> |
ljMixed(i,j)%sigma6 = & |
178 |
> |
(ljMixed(i,j)%sigma)**6 |
179 |
> |
|
180 |
> |
|
181 |
> |
ljMixed(i,j)%tp6 = ljMixed(i,j)%sigma6/rcut6 |
182 |
> |
|
183 |
> |
ljMixed(i,j)%tp12 = (ljMixed(i,j)%tp6) ** 2 |
184 |
> |
|
185 |
> |
|
186 |
> |
ljMixed(i,j)%epsilon = & |
187 |
> |
calcLJMix("epsilon",myEpsilon_i, & |
188 |
> |
myEpsilon_j) |
189 |
> |
|
190 |
> |
ljMixed(i,j)%delta = -4.0_DP * ljMixed(i,j)%epsilon * & |
191 |
> |
(ljMixed(i,j)%tp12 - ljMixed(i,j)%tp6) |
192 |
> |
|
193 |
> |
|
194 |
> |
ljMixed(j,i)%sigma = ljMixed(i,j)%sigma |
195 |
> |
ljMixed(j,i)%sigma6 = ljMixed(i,j)%sigma6 |
196 |
> |
ljMixed(j,i)%tp6 = ljMixed(i,j)%tp6 |
197 |
> |
ljMixed(j,i)%tp12 = ljMixed(i,j)%tp12 |
198 |
> |
ljMixed(j,i)%epsilon = ljMixed(i,j)%epsilon |
199 |
> |
ljMixed(j,i)%delta = ljMixed(i,j)%delta |
200 |
> |
endif |
201 |
> |
end do |
202 |
> |
endif |
203 |
|
end do |
204 |
|
|
205 |
|
end subroutine createMixingList |
206 |
|
|
207 |
< |
subroutine do_lj_pair(atom1, atom2, d, rij, r2, pot, f, do_pot, do_stress) |
207 |
> |
subroutine do_lj_pair(atom1, atom2, d, rij, r2, sw, vpair, fpair, & |
208 |
> |
pot, f, do_pot) |
209 |
|
|
210 |
|
integer, intent(in) :: atom1, atom2 |
211 |
|
real( kind = dp ), intent(in) :: rij, r2 |
212 |
< |
real( kind = dp ) :: pot |
212 |
> |
real( kind = dp ) :: pot, sw, vpair |
213 |
|
real( kind = dp ), dimension(3,nLocal) :: f |
214 |
|
real( kind = dp ), intent(in), dimension(3) :: d |
215 |
< |
logical, intent(in) :: do_pot, do_stress |
215 |
> |
real( kind = dp ), intent(inout), dimension(3) :: fpair |
216 |
> |
logical, intent(in) :: do_pot |
217 |
|
|
218 |
|
! local Variables |
219 |
|
real( kind = dp ) :: drdx, drdy, drdz |
227 |
|
real( kind = dp ) :: delta |
228 |
|
integer :: id1, id2 |
229 |
|
|
230 |
< |
|
212 |
< |
if (rij.lt.LJ_rcut) then |
213 |
< |
|
214 |
< |
! Look up the correct parameters in the mixing matrix |
230 |
> |
! Look up the correct parameters in the mixing matrix |
231 |
|
#ifdef IS_MPI |
232 |
< |
sigma6 = ljMixed(atid_Row(atom1),atid_Col(atom2))%sigma6 |
233 |
< |
epsilon = ljMixed(atid_Row(atom1),atid_Col(atom2))%epsilon |
234 |
< |
delta = ljMixed(atid_Row(atom1),atid_Col(atom2))%delta |
232 |
> |
sigma6 = ljMixed(atid_Row(atom1),atid_Col(atom2))%sigma6 |
233 |
> |
epsilon = ljMixed(atid_Row(atom1),atid_Col(atom2))%epsilon |
234 |
> |
delta = ljMixed(atid_Row(atom1),atid_Col(atom2))%delta |
235 |
|
#else |
236 |
< |
sigma6 = ljMixed(atid(atom1),atid(atom2))%sigma6 |
237 |
< |
epsilon = ljMixed(atid(atom1),atid(atom2))%epsilon |
238 |
< |
delta = ljMixed(atid(atom1),atid(atom2))%delta |
236 |
> |
sigma6 = ljMixed(atid(atom1),atid(atom2))%sigma6 |
237 |
> |
epsilon = ljMixed(atid(atom1),atid(atom2))%epsilon |
238 |
> |
delta = ljMixed(atid(atom1),atid(atom2))%delta |
239 |
|
#endif |
240 |
+ |
|
241 |
+ |
r6 = r2 * r2 * r2 |
242 |
+ |
|
243 |
+ |
t6 = sigma6/ r6 |
244 |
+ |
t12 = t6 * t6 |
245 |
+ |
|
246 |
+ |
pot_temp = 4.0E0_DP * epsilon * (t12 - t6) |
247 |
+ |
if (LJ_do_shift) then |
248 |
+ |
pot_temp = pot_temp + delta |
249 |
+ |
endif |
250 |
+ |
|
251 |
+ |
vpair = vpair + pot_temp |
252 |
|
|
253 |
< |
r6 = r2 * r2 * r2 |
253 |
> |
dudr = sw * 24.0E0_DP * epsilon * (t6 - 2.0E0_DP*t12) / rij |
254 |
|
|
255 |
< |
t6 = sigma6/ r6 |
256 |
< |
t12 = t6 * t6 |
257 |
< |
|
230 |
< |
pot_temp = 4.0E0_DP * epsilon * (t12 - t6) + delta |
255 |
> |
drdx = d(1) / rij |
256 |
> |
drdy = d(2) / rij |
257 |
> |
drdz = d(3) / rij |
258 |
|
|
259 |
< |
dudr = 24.0E0_DP * epsilon * (t6 - 2.0E0_DP*t12) / rij |
259 |
> |
fx = dudr * drdx |
260 |
> |
fy = dudr * drdy |
261 |
> |
fz = dudr * drdz |
262 |
> |
|
263 |
|
|
234 |
– |
drdx = d(1) / rij |
235 |
– |
drdy = d(2) / rij |
236 |
– |
drdz = d(3) / rij |
237 |
– |
|
238 |
– |
fx = dudr * drdx |
239 |
– |
fy = dudr * drdy |
240 |
– |
fz = dudr * drdz |
241 |
– |
|
264 |
|
#ifdef IS_MPI |
265 |
< |
if (do_pot) then |
266 |
< |
pot_Row(atom1) = pot_Row(atom1) + pot_temp*0.5 |
267 |
< |
pot_Col(atom2) = pot_Col(atom2) + pot_temp*0.5 |
268 |
< |
endif |
269 |
< |
|
270 |
< |
f_Row(1,atom1) = f_Row(1,atom1) + fx |
271 |
< |
f_Row(2,atom1) = f_Row(2,atom1) + fy |
272 |
< |
f_Row(3,atom1) = f_Row(3,atom1) + fz |
273 |
< |
|
274 |
< |
f_Col(1,atom2) = f_Col(1,atom2) - fx |
275 |
< |
f_Col(2,atom2) = f_Col(2,atom2) - fy |
276 |
< |
f_Col(3,atom2) = f_Col(3,atom2) - fz |
277 |
< |
|
265 |
> |
if (do_pot) then |
266 |
> |
pot_Row(atom1) = pot_Row(atom1) + sw*pot_temp*0.5 |
267 |
> |
pot_Col(atom2) = pot_Col(atom2) + sw*pot_temp*0.5 |
268 |
> |
endif |
269 |
> |
|
270 |
> |
f_Row(1,atom1) = f_Row(1,atom1) + fx |
271 |
> |
f_Row(2,atom1) = f_Row(2,atom1) + fy |
272 |
> |
f_Row(3,atom1) = f_Row(3,atom1) + fz |
273 |
> |
|
274 |
> |
f_Col(1,atom2) = f_Col(1,atom2) - fx |
275 |
> |
f_Col(2,atom2) = f_Col(2,atom2) - fy |
276 |
> |
f_Col(3,atom2) = f_Col(3,atom2) - fz |
277 |
> |
|
278 |
|
#else |
279 |
< |
if (do_pot) pot = pot + pot_temp |
279 |
> |
if (do_pot) pot = pot + sw*pot_temp |
280 |
|
|
281 |
< |
f(1,atom1) = f(1,atom1) + fx |
282 |
< |
f(2,atom1) = f(2,atom1) + fy |
283 |
< |
f(3,atom1) = f(3,atom1) + fz |
284 |
< |
|
285 |
< |
f(1,atom2) = f(1,atom2) - fx |
286 |
< |
f(2,atom2) = f(2,atom2) - fy |
287 |
< |
f(3,atom2) = f(3,atom2) - fz |
281 |
> |
f(1,atom1) = f(1,atom1) + fx |
282 |
> |
f(2,atom1) = f(2,atom1) + fy |
283 |
> |
f(3,atom1) = f(3,atom1) + fz |
284 |
> |
|
285 |
> |
f(1,atom2) = f(1,atom2) - fx |
286 |
> |
f(2,atom2) = f(2,atom2) - fy |
287 |
> |
f(3,atom2) = f(3,atom2) - fz |
288 |
|
#endif |
289 |
< |
|
268 |
< |
if (do_stress) then |
269 |
< |
|
289 |
> |
|
290 |
|
#ifdef IS_MPI |
291 |
< |
id1 = tagRow(atom1) |
292 |
< |
id2 = tagColumn(atom2) |
291 |
> |
id1 = AtomRowToGlobal(atom1) |
292 |
> |
id2 = AtomColToGlobal(atom2) |
293 |
|
#else |
294 |
< |
id1 = atom1 |
295 |
< |
id2 = atom2 |
294 |
> |
id1 = atom1 |
295 |
> |
id2 = atom2 |
296 |
|
#endif |
297 |
|
|
298 |
< |
if (molMembershipList(id1) .ne. molMembershipList(id2)) then |
279 |
< |
|
280 |
< |
! because the d vector is the rj - ri vector, and |
281 |
< |
! because fx, fy, fz are the force on atom i, we need a |
282 |
< |
! negative sign here: |
283 |
< |
|
284 |
< |
tau_Temp(1) = tau_Temp(1) - d(1) * fx |
285 |
< |
tau_Temp(2) = tau_Temp(2) - d(1) * fy |
286 |
< |
tau_Temp(3) = tau_Temp(3) - d(1) * fz |
287 |
< |
tau_Temp(4) = tau_Temp(4) - d(2) * fx |
288 |
< |
tau_Temp(5) = tau_Temp(5) - d(2) * fy |
289 |
< |
tau_Temp(6) = tau_Temp(6) - d(2) * fz |
290 |
< |
tau_Temp(7) = tau_Temp(7) - d(3) * fx |
291 |
< |
tau_Temp(8) = tau_Temp(8) - d(3) * fy |
292 |
< |
tau_Temp(9) = tau_Temp(9) - d(3) * fz |
293 |
< |
|
294 |
< |
virial_Temp = virial_Temp + & |
295 |
< |
(tau_Temp(1) + tau_Temp(5) + tau_Temp(9)) |
296 |
< |
|
297 |
< |
endif |
298 |
< |
endif |
298 |
> |
if (molMembershipList(id1) .ne. molMembershipList(id2)) then |
299 |
|
|
300 |
+ |
fpair(1) = fpair(1) + fx |
301 |
+ |
fpair(2) = fpair(2) + fy |
302 |
+ |
fpair(3) = fpair(3) + fz |
303 |
+ |
|
304 |
|
endif |
305 |
+ |
|
306 |
|
return |
307 |
< |
|
307 |
> |
|
308 |
|
end subroutine do_lj_pair |
309 |
< |
|
310 |
< |
|
309 |
> |
|
310 |
> |
|
311 |
|
!! Calculates the mixing for sigma or epslon |
312 |
< |
|
312 |
> |
|
313 |
|
function calcLJMix(thisParam,param1,param2,status) result(myMixParam) |
314 |
|
character(len=*) :: thisParam |
315 |
|
real(kind = dp) :: param1 |