1 |
mmeineke |
377 |
!! do_Forces.F90 |
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!! module do_Forces |
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!! Calculates Long Range forces. |
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!! @author Charles F. Vardeman II |
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!! @author Matthew Meineke |
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chuckv |
900 |
!! @version $Id: do_Forces.F90,v 1.45 2004-01-06 18:54:57 chuckv Exp $, $Date: 2004-01-06 18:54:57 $, $Name: not supported by cvs2svn $, $Revision: 1.45 $ |
8 |
mmeineke |
377 |
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module do_Forces |
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use force_globals |
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use simulation |
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use definitions |
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use atype_module |
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use neighborLists |
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use lj |
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use sticky_pair |
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use dipole_dipole |
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use reaction_field |
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use gb_pair |
20 |
mmeineke |
626 |
use vector_class |
21 |
chuckv |
650 |
use eam |
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chuckv |
657 |
use status |
23 |
mmeineke |
377 |
#ifdef IS_MPI |
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use mpiSimulation |
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#endif |
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implicit none |
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PRIVATE |
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#define __FORTRAN90 |
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#include "fForceField.h" |
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chuckv |
900 |
logical, save :: haveRlist = .false. |
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logical, save :: haveNeighborList = .false. |
35 |
mmeineke |
626 |
logical, save :: havePolicies = .false. |
36 |
chuckv |
900 |
logical, save :: haveSIMvariables = .false. |
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logical, save :: havePropertyMap = .false. |
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logical, save :: haveSaneForceField = .false. |
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mmeineke |
377 |
logical, save :: FF_uses_LJ |
40 |
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logical, save :: FF_uses_sticky |
41 |
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logical, save :: FF_uses_dipoles |
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logical, save :: FF_uses_RF |
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logical, save :: FF_uses_GB |
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logical, save :: FF_uses_EAM |
45 |
chuckv |
900 |
logical, save :: SIM_uses_LJ |
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logical, save :: SIM_uses_sticky |
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logical, save :: SIM_uses_dipoles |
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logical, save :: SIM_uses_RF |
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logical, save :: SIM_uses_GB |
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logical, save :: SIM_uses_EAM |
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logical, save :: SIM_requires_postpair_calc |
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logical, save :: SIM_requires_prepair_calc |
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logical, save :: SIM_uses_directional_atoms |
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logical, save :: SIM_uses_PBC |
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mmeineke |
377 |
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mmeineke |
626 |
real(kind=dp), save :: rlist, rlistsq |
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mmeineke |
377 |
public :: init_FF |
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public :: do_force_loop |
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mmeineke |
626 |
public :: setRlistDF |
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mmeineke |
377 |
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chuckv |
900 |
|
63 |
chuckv |
694 |
#ifdef PROFILE |
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chuckv |
883 |
public :: getforcetime |
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real, save :: forceTime = 0 |
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real :: forceTimeInitial, forceTimeFinal |
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mmeineke |
891 |
integer :: nLoops |
68 |
chuckv |
694 |
#endif |
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chuckv |
900 |
type :: Properties |
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logical :: is_lj = .false. |
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logical :: is_sticky = .false. |
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logical :: is_dp = .false. |
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logical :: is_gb = .false. |
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logical :: is_eam = .false. |
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real(kind=DP) :: dipole_moment = 0.0_DP |
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end type Properties |
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chuckv |
895 |
|
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chuckv |
900 |
type(Properties), dimension(:),allocatable :: PropertyMap |
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mmeineke |
377 |
contains |
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mmeineke |
626 |
subroutine setRlistDF( this_rlist ) |
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real(kind=dp) :: this_rlist |
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rlist = this_rlist |
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rlistsq = rlist * rlist |
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haveRlist = .true. |
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end subroutine setRlistDF |
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chuckv |
900 |
subroutine createPropertyMap(status) |
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integer :: nAtypes |
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integer :: status |
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integer :: i |
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logical :: thisProperty |
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real (kind=DP) :: thisDPproperty |
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status = 0 |
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nAtypes = getSize(atypes) |
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if (nAtypes == 0) then |
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status = -1 |
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return |
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end if |
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if (.not. allocated(PropertyMap)) then |
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allocate(PropertyMap(nAtypes)) |
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endif |
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do i = 1, nAtypes |
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call getElementProperty(atypes, i, "is_LJ", thisProperty) |
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PropertyMap(i)%is_LJ = thisProperty |
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call getElementProperty(atypes, i, "is_DP", thisProperty) |
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PropertyMap(i)%is_DP = thisProperty |
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if (thisProperty) then |
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call getElementProperty(atypes, i, "dipole_moment", thisDPproperty) |
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PropertyMap(i)%dipole_moment = thisDPproperty |
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endif |
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call getElementProperty(atypes, i, "is_Sticky", thisProperty) |
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PropertyMap(i)%is_Sticky = thisProperty |
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call getElementProperty(atypes, i, "is_GB", thisProperty) |
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PropertyMap(i)%is_GB = thisProperty |
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call getElementProperty(atypes, i, "is_EAM", thisProperty) |
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PropertyMap(i)%is_EAM = thisProperty |
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end do |
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havePropertyMap = .true. |
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end subroutine createPropertyMap |
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subroutine setSimVariables() |
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SIM_uses_LJ = SimUsesLJ() |
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SIM_uses_sticky = SimUsesSticky() |
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SIM_uses_dipoles = SimUsesDipoles() |
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SIM_uses_RF = SimUsesRF() |
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SIM_uses_GB = SimUsesGB() |
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SIM_uses_EAM = SimUsesEAM() |
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SIM_requires_postpair_calc = SimRequiresPostpairCalc() |
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SIM_requires_prepair_calc = SimRequiresPrepairCalc() |
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SIM_uses_directional_atoms = SimUsesDirectionalAtoms() |
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SIM_uses_PBC = SimUsesPBC() |
148 |
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149 |
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haveSIMvariables = .true. |
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return |
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end subroutine setSimVariables |
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subroutine doReadyCheck(error) |
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integer, intent(out) :: error |
156 |
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integer :: myStatus |
158 |
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error = 0 |
160 |
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161 |
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if (.not. havePropertyMap) then |
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myStatus = 0 |
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call createPropertyMap(myStatus) |
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if (myStatus .ne. 0) then |
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write(default_error, *) 'createPropertyMap failed in do_Forces!' |
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error = -1 |
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return |
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endif |
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endif |
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174 |
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if (.not. haveSIMvariables) then |
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call setSimVariables() |
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endif |
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if (.not. haveRlist) then |
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write(default_error, *) 'rList has not been set in do_Forces!' |
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error = -1 |
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return |
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endif |
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184 |
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if (SIM_uses_LJ .and. FF_uses_LJ) then |
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if (.not. havePolicies) then |
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write(default_error, *) 'LJ mixing Policies have not been set in do_Forces!' |
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error = -1 |
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return |
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endif |
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endif |
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192 |
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if (.not. haveNeighborList) then |
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write(default_error, *) 'neighbor list has not been initialized in do_Forces!' |
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error = -1 |
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return |
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end if |
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198 |
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if (.not. haveSaneForceField) then |
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write(default_error, *) 'Force Field is not sane in do_Forces!' |
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error = -1 |
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return |
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end if |
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#ifdef IS_MPI |
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if (.not. isMPISimSet()) then |
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write(default_error,*) "ERROR: mpiSimulation has not been initialized!" |
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error = -1 |
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return |
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endif |
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#endif |
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return |
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end subroutine doReadyCheck |
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214 |
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215 |
mmeineke |
377 |
subroutine init_FF(LJMIXPOLICY, use_RF_c, thisStat) |
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217 |
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integer, intent(in) :: LJMIXPOLICY |
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logical, intent(in) :: use_RF_c |
219 |
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integer, intent(out) :: thisStat |
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integer :: my_status, nMatches |
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integer, pointer :: MatchList(:) => null() |
223 |
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real(kind=dp) :: rcut, rrf, rt, dielect |
224 |
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225 |
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!! assume things are copacetic, unless they aren't |
226 |
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thisStat = 0 |
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!! Fortran's version of a cast: |
229 |
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FF_uses_RF = use_RF_c |
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!! init_FF is called *after* all of the atom types have been |
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!! defined in atype_module using the new_atype subroutine. |
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!! |
234 |
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!! this will scan through the known atypes and figure out what |
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!! interactions are used by the force field. |
236 |
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237 |
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FF_uses_LJ = .false. |
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FF_uses_sticky = .false. |
239 |
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FF_uses_dipoles = .false. |
240 |
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FF_uses_GB = .false. |
241 |
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FF_uses_EAM = .false. |
242 |
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243 |
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call getMatchingElementList(atypes, "is_LJ", .true., nMatches, MatchList) |
244 |
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if (nMatches .gt. 0) FF_uses_LJ = .true. |
245 |
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246 |
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call getMatchingElementList(atypes, "is_DP", .true., nMatches, MatchList) |
247 |
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if (nMatches .gt. 0) FF_uses_dipoles = .true. |
248 |
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249 |
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call getMatchingElementList(atypes, "is_Sticky", .true., nMatches, & |
250 |
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MatchList) |
251 |
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if (nMatches .gt. 0) FF_uses_Sticky = .true. |
252 |
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253 |
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call getMatchingElementList(atypes, "is_GB", .true., nMatches, MatchList) |
254 |
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if (nMatches .gt. 0) FF_uses_GB = .true. |
255 |
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256 |
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call getMatchingElementList(atypes, "is_EAM", .true., nMatches, MatchList) |
257 |
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if (nMatches .gt. 0) FF_uses_EAM = .true. |
258 |
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259 |
chuckv |
900 |
!! Assume sanity (for the sake of argument) |
260 |
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haveSaneForceField = .true. |
261 |
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262 |
mmeineke |
377 |
!! check to make sure the FF_uses_RF setting makes sense |
263 |
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264 |
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if (FF_uses_dipoles) then |
265 |
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if (FF_uses_RF) then |
266 |
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dielect = getDielect() |
267 |
mmeineke |
626 |
call initialize_rf(dielect) |
268 |
mmeineke |
377 |
endif |
269 |
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else |
270 |
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if (FF_uses_RF) then |
271 |
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write(default_error,*) 'Using Reaction Field with no dipoles? Huh?' |
272 |
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thisStat = -1 |
273 |
chuckv |
900 |
haveSaneForceField = .false. |
274 |
mmeineke |
377 |
return |
275 |
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endif |
276 |
mmeineke |
626 |
endif |
277 |
mmeineke |
377 |
|
278 |
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if (FF_uses_LJ) then |
279 |
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280 |
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select case (LJMIXPOLICY) |
281 |
gezelter |
834 |
case (LB_MIXING_RULE) |
282 |
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call init_lj_FF(LB_MIXING_RULE, my_status) |
283 |
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case (EXPLICIT_MIXING_RULE) |
284 |
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call init_lj_FF(EXPLICIT_MIXING_RULE, my_status) |
285 |
mmeineke |
377 |
case default |
286 |
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write(default_error,*) 'unknown LJ Mixing Policy!' |
287 |
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thisStat = -1 |
288 |
chuckv |
900 |
haveSaneForceField = .false. |
289 |
mmeineke |
377 |
return |
290 |
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end select |
291 |
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if (my_status /= 0) then |
292 |
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thisStat = -1 |
293 |
chuckv |
900 |
haveSaneForceField = .false. |
294 |
mmeineke |
377 |
return |
295 |
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end if |
296 |
chuckv |
900 |
havePolicies = .true. |
297 |
mmeineke |
377 |
endif |
298 |
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299 |
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if (FF_uses_sticky) then |
300 |
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call check_sticky_FF(my_status) |
301 |
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if (my_status /= 0) then |
302 |
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thisStat = -1 |
303 |
chuckv |
900 |
haveSaneForceField = .false. |
304 |
mmeineke |
377 |
return |
305 |
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end if |
306 |
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endif |
307 |
chuckv |
657 |
|
308 |
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309 |
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if (FF_uses_EAM) then |
310 |
chuckv |
801 |
call init_EAM_FF(my_status) |
311 |
chuckv |
657 |
if (my_status /= 0) then |
312 |
chuckv |
900 |
write(default_error, *) "init_EAM_FF returned a bad status" |
313 |
chuckv |
657 |
thisStat = -1 |
314 |
chuckv |
900 |
haveSaneForceField = .false. |
315 |
chuckv |
657 |
return |
316 |
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end if |
317 |
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endif |
318 |
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319 |
mmeineke |
377 |
if (FF_uses_GB) then |
320 |
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call check_gb_pair_FF(my_status) |
321 |
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if (my_status .ne. 0) then |
322 |
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thisStat = -1 |
323 |
chuckv |
900 |
haveSaneForceField = .false. |
324 |
mmeineke |
377 |
return |
325 |
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endif |
326 |
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endif |
327 |
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328 |
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if (FF_uses_GB .and. FF_uses_LJ) then |
329 |
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endif |
330 |
chuckv |
900 |
if (.not. haveNeighborList) then |
331 |
chuckv |
480 |
!! Create neighbor lists |
332 |
chuckv |
898 |
call expandNeighborList(nLocal, my_status) |
333 |
chuckv |
480 |
if (my_Status /= 0) then |
334 |
|
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write(default_error,*) "SimSetup: ExpandNeighborList returned error." |
335 |
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thisStat = -1 |
336 |
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return |
337 |
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endif |
338 |
chuckv |
900 |
haveNeighborList = .true. |
339 |
chuckv |
480 |
endif |
340 |
chuckv |
657 |
|
341 |
mmeineke |
377 |
end subroutine init_FF |
342 |
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343 |
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344 |
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!! Does force loop over i,j pairs. Calls do_pair to calculates forces. |
345 |
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!-------------------------------------------------------------> |
346 |
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subroutine do_force_loop(q, A, u_l, f, t, tau, pot, do_pot_c, do_stress_c, & |
347 |
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error) |
348 |
|
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!! Position array provided by C, dimensioned by getNlocal |
349 |
chuckv |
898 |
real ( kind = dp ), dimension(3,nLocal) :: q |
350 |
mmeineke |
377 |
!! Rotation Matrix for each long range particle in simulation. |
351 |
chuckv |
898 |
real( kind = dp), dimension(9,nLocal) :: A |
352 |
mmeineke |
377 |
!! Unit vectors for dipoles (lab frame) |
353 |
chuckv |
898 |
real( kind = dp ), dimension(3,nLocal) :: u_l |
354 |
mmeineke |
377 |
!! Force array provided by C, dimensioned by getNlocal |
355 |
chuckv |
898 |
real ( kind = dp ), dimension(3,nLocal) :: f |
356 |
mmeineke |
377 |
!! Torsion array provided by C, dimensioned by getNlocal |
357 |
chuckv |
898 |
real( kind = dp ), dimension(3,nLocal) :: t |
358 |
chuckv |
895 |
|
359 |
mmeineke |
377 |
!! Stress Tensor |
360 |
|
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real( kind = dp), dimension(9) :: tau |
361 |
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real ( kind = dp ) :: pot |
362 |
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logical ( kind = 2) :: do_pot_c, do_stress_c |
363 |
|
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logical :: do_pot |
364 |
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logical :: do_stress |
365 |
chuckv |
439 |
#ifdef IS_MPI |
366 |
chuckv |
441 |
real( kind = DP ) :: pot_local |
367 |
mmeineke |
377 |
integer :: nrow |
368 |
|
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integer :: ncol |
369 |
chuckv |
694 |
integer :: nprocs |
370 |
mmeineke |
377 |
#endif |
371 |
|
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integer :: natoms |
372 |
|
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logical :: update_nlist |
373 |
|
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integer :: i, j, jbeg, jend, jnab |
374 |
|
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integer :: nlist |
375 |
mmeineke |
626 |
real( kind = DP ) :: rijsq |
376 |
mmeineke |
377 |
real(kind=dp),dimension(3) :: d |
377 |
|
|
real(kind=dp) :: rfpot, mu_i, virial |
378 |
chuckv |
897 |
integer :: me_i, me_j |
379 |
mmeineke |
377 |
logical :: is_dp_i |
380 |
|
|
integer :: neighborListSize |
381 |
|
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integer :: listerror, error |
382 |
|
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integer :: localError |
383 |
chuckv |
897 |
integer :: propPack_i, propPack_j |
384 |
mmeineke |
626 |
|
385 |
gezelter |
845 |
real(kind=dp) :: listSkin = 1.0 |
386 |
mmeineke |
377 |
|
387 |
|
|
!! initialize local variables |
388 |
|
|
|
389 |
|
|
#ifdef IS_MPI |
390 |
chuckv |
441 |
pot_local = 0.0_dp |
391 |
mmeineke |
377 |
nrow = getNrow(plan_row) |
392 |
|
|
ncol = getNcol(plan_col) |
393 |
|
|
#else |
394 |
|
|
natoms = nlocal |
395 |
|
|
#endif |
396 |
chuckv |
669 |
|
397 |
chuckv |
900 |
call doReadyCheck(localError) |
398 |
mmeineke |
377 |
if ( localError .ne. 0 ) then |
399 |
chuckv |
900 |
call handleError("do_force_loop", "Not Initialized") |
400 |
mmeineke |
377 |
error = -1 |
401 |
|
|
return |
402 |
|
|
end if |
403 |
|
|
call zero_work_arrays() |
404 |
|
|
|
405 |
|
|
do_pot = do_pot_c |
406 |
|
|
do_stress = do_stress_c |
407 |
|
|
|
408 |
|
|
! Gather all information needed by all force loops: |
409 |
|
|
|
410 |
|
|
#ifdef IS_MPI |
411 |
|
|
|
412 |
|
|
call gather(q,q_Row,plan_row3d) |
413 |
|
|
call gather(q,q_Col,plan_col3d) |
414 |
|
|
|
415 |
chuckv |
900 |
if (FF_UsesDirectionalAtoms() .and. SIM_uses_directional_atoms) then |
416 |
mmeineke |
377 |
call gather(u_l,u_l_Row,plan_row3d) |
417 |
|
|
call gather(u_l,u_l_Col,plan_col3d) |
418 |
|
|
|
419 |
|
|
call gather(A,A_Row,plan_row_rotation) |
420 |
|
|
call gather(A,A_Col,plan_col_rotation) |
421 |
|
|
endif |
422 |
|
|
|
423 |
|
|
#endif |
424 |
chuckv |
694 |
|
425 |
|
|
!! Begin force loop timing: |
426 |
|
|
#ifdef PROFILE |
427 |
|
|
call cpu_time(forceTimeInitial) |
428 |
|
|
nloops = nloops + 1 |
429 |
|
|
#endif |
430 |
chuckv |
669 |
|
431 |
chuckv |
900 |
if (FF_RequiresPrepairCalc() .and. SIM_requires_prepair_calc) then |
432 |
mmeineke |
377 |
!! See if we need to update neighbor lists |
433 |
mmeineke |
626 |
call checkNeighborList(nlocal, q, listSkin, update_nlist) |
434 |
mmeineke |
377 |
!! if_mpi_gather_stuff_for_prepair |
435 |
|
|
!! do_prepair_loop_if_needed |
436 |
|
|
!! if_mpi_scatter_stuff_from_prepair |
437 |
|
|
!! if_mpi_gather_stuff_from_prepair_to_main_loop |
438 |
chuckv |
673 |
|
439 |
chuckv |
648 |
!--------------------PREFORCE LOOP----------->>>>>>>>>>>>>>>>>>>>>>>>>>> |
440 |
|
|
#ifdef IS_MPI |
441 |
|
|
|
442 |
|
|
if (update_nlist) then |
443 |
|
|
|
444 |
|
|
!! save current configuration, construct neighbor list, |
445 |
|
|
!! and calculate forces |
446 |
|
|
call saveNeighborList(nlocal, q) |
447 |
|
|
|
448 |
|
|
neighborListSize = size(list) |
449 |
|
|
nlist = 0 |
450 |
|
|
|
451 |
|
|
do i = 1, nrow |
452 |
|
|
point(i) = nlist + 1 |
453 |
|
|
|
454 |
|
|
prepair_inner: do j = 1, ncol |
455 |
|
|
|
456 |
|
|
if (skipThisPair(i,j)) cycle prepair_inner |
457 |
|
|
|
458 |
|
|
call get_interatomic_vector(q_Row(:,i), q_Col(:,j), d, rijsq) |
459 |
|
|
|
460 |
|
|
if (rijsq < rlistsq) then |
461 |
|
|
|
462 |
|
|
nlist = nlist + 1 |
463 |
|
|
|
464 |
|
|
if (nlist > neighborListSize) then |
465 |
|
|
call expandNeighborList(nlocal, listerror) |
466 |
|
|
if (listerror /= 0) then |
467 |
|
|
error = -1 |
468 |
|
|
write(DEFAULT_ERROR,*) "ERROR: nlist > list size and max allocations exceeded." |
469 |
|
|
return |
470 |
|
|
end if |
471 |
|
|
neighborListSize = size(list) |
472 |
|
|
endif |
473 |
|
|
|
474 |
|
|
list(nlist) = j |
475 |
|
|
call do_prepair(i, j, rijsq, d, do_pot, do_stress, u_l, A, f, t, pot_local) |
476 |
|
|
endif |
477 |
|
|
enddo prepair_inner |
478 |
|
|
enddo |
479 |
|
|
|
480 |
|
|
point(nrow + 1) = nlist + 1 |
481 |
|
|
|
482 |
|
|
else !! (of update_check) |
483 |
|
|
|
484 |
|
|
! use the list to find the neighbors |
485 |
|
|
do i = 1, nrow |
486 |
|
|
JBEG = POINT(i) |
487 |
|
|
JEND = POINT(i+1) - 1 |
488 |
|
|
! check thiat molecule i has neighbors |
489 |
|
|
if (jbeg .le. jend) then |
490 |
|
|
|
491 |
|
|
do jnab = jbeg, jend |
492 |
|
|
j = list(jnab) |
493 |
|
|
|
494 |
|
|
call get_interatomic_vector(q_Row(:,i), q_Col(:,j), d, rijsq) |
495 |
|
|
call do_prepair(i, j, rijsq, d, do_pot, do_stress, & |
496 |
|
|
u_l, A, f, t, pot_local) |
497 |
|
|
|
498 |
|
|
enddo |
499 |
|
|
endif |
500 |
|
|
enddo |
501 |
|
|
endif |
502 |
|
|
|
503 |
|
|
#else |
504 |
|
|
|
505 |
|
|
if (update_nlist) then |
506 |
|
|
|
507 |
|
|
! save current configuration, contruct neighbor list, |
508 |
|
|
! and calculate forces |
509 |
|
|
call saveNeighborList(natoms, q) |
510 |
|
|
|
511 |
|
|
neighborListSize = size(list) |
512 |
|
|
|
513 |
|
|
nlist = 0 |
514 |
chuckv |
673 |
|
515 |
chuckv |
648 |
do i = 1, natoms-1 |
516 |
|
|
point(i) = nlist + 1 |
517 |
|
|
|
518 |
|
|
prepair_inner: do j = i+1, natoms |
519 |
|
|
|
520 |
|
|
if (skipThisPair(i,j)) cycle prepair_inner |
521 |
|
|
|
522 |
|
|
call get_interatomic_vector(q(:,i), q(:,j), d, rijsq) |
523 |
|
|
|
524 |
|
|
|
525 |
|
|
if (rijsq < rlistsq) then |
526 |
chuckv |
673 |
|
527 |
|
|
|
528 |
chuckv |
648 |
nlist = nlist + 1 |
529 |
|
|
|
530 |
|
|
if (nlist > neighborListSize) then |
531 |
|
|
call expandNeighborList(natoms, listerror) |
532 |
|
|
if (listerror /= 0) then |
533 |
|
|
error = -1 |
534 |
|
|
write(DEFAULT_ERROR,*) "ERROR: nlist > list size and max allocations exceeded." |
535 |
|
|
return |
536 |
|
|
end if |
537 |
|
|
neighborListSize = size(list) |
538 |
|
|
endif |
539 |
|
|
|
540 |
|
|
list(nlist) = j |
541 |
|
|
|
542 |
|
|
call do_prepair(i, j, rijsq, d, do_pot, do_stress, & |
543 |
|
|
u_l, A, f, t, pot) |
544 |
|
|
|
545 |
|
|
endif |
546 |
|
|
enddo prepair_inner |
547 |
|
|
enddo |
548 |
|
|
|
549 |
|
|
point(natoms) = nlist + 1 |
550 |
|
|
|
551 |
|
|
else !! (update) |
552 |
chuckv |
673 |
|
553 |
chuckv |
648 |
! use the list to find the neighbors |
554 |
|
|
do i = 1, natoms-1 |
555 |
|
|
JBEG = POINT(i) |
556 |
|
|
JEND = POINT(i+1) - 1 |
557 |
|
|
! check thiat molecule i has neighbors |
558 |
|
|
if (jbeg .le. jend) then |
559 |
|
|
|
560 |
|
|
do jnab = jbeg, jend |
561 |
|
|
j = list(jnab) |
562 |
|
|
|
563 |
|
|
call get_interatomic_vector(q(:,i), q(:,j), d, rijsq) |
564 |
|
|
call do_prepair(i, j, rijsq, d, do_pot, do_stress, & |
565 |
|
|
u_l, A, f, t, pot) |
566 |
|
|
|
567 |
|
|
enddo |
568 |
|
|
endif |
569 |
|
|
enddo |
570 |
|
|
endif |
571 |
|
|
#endif |
572 |
|
|
!! Do rest of preforce calculations |
573 |
chuckv |
673 |
!! do necessary preforce calculations |
574 |
|
|
call do_preforce(nlocal,pot) |
575 |
|
|
! we have already updated the neighbor list set it to false... |
576 |
|
|
update_nlist = .false. |
577 |
mmeineke |
377 |
else |
578 |
chuckv |
648 |
!! See if we need to update neighbor lists for non pre-pair |
579 |
mmeineke |
626 |
call checkNeighborList(nlocal, q, listSkin, update_nlist) |
580 |
mmeineke |
377 |
endif |
581 |
chuckv |
648 |
|
582 |
|
|
|
583 |
|
|
|
584 |
|
|
|
585 |
|
|
|
586 |
|
|
!---------------------------------MAIN Pair LOOP->>>>>>>>>>>>>>>>>>>>>>>>>>>> |
587 |
|
|
|
588 |
|
|
|
589 |
|
|
|
590 |
|
|
|
591 |
|
|
|
592 |
mmeineke |
377 |
#ifdef IS_MPI |
593 |
|
|
|
594 |
|
|
if (update_nlist) then |
595 |
|
|
!! save current configuration, construct neighbor list, |
596 |
|
|
!! and calculate forces |
597 |
mmeineke |
459 |
call saveNeighborList(nlocal, q) |
598 |
mmeineke |
377 |
|
599 |
|
|
neighborListSize = size(list) |
600 |
|
|
nlist = 0 |
601 |
|
|
|
602 |
|
|
do i = 1, nrow |
603 |
chuckv |
895 |
|
604 |
mmeineke |
377 |
point(i) = nlist + 1 |
605 |
|
|
|
606 |
|
|
inner: do j = 1, ncol |
607 |
|
|
|
608 |
|
|
if (skipThisPair(i,j)) cycle inner |
609 |
|
|
|
610 |
|
|
call get_interatomic_vector(q_Row(:,i), q_Col(:,j), d, rijsq) |
611 |
|
|
|
612 |
mmeineke |
626 |
if (rijsq < rlistsq) then |
613 |
mmeineke |
377 |
|
614 |
|
|
nlist = nlist + 1 |
615 |
|
|
|
616 |
|
|
if (nlist > neighborListSize) then |
617 |
|
|
call expandNeighborList(nlocal, listerror) |
618 |
|
|
if (listerror /= 0) then |
619 |
|
|
error = -1 |
620 |
|
|
write(DEFAULT_ERROR,*) "ERROR: nlist > list size and max allocations exceeded." |
621 |
|
|
return |
622 |
|
|
end if |
623 |
|
|
neighborListSize = size(list) |
624 |
|
|
endif |
625 |
|
|
|
626 |
|
|
list(nlist) = j |
627 |
|
|
|
628 |
mmeineke |
626 |
call do_pair(i, j, rijsq, d, do_pot, do_stress, & |
629 |
|
|
u_l, A, f, t, pot_local) |
630 |
|
|
|
631 |
mmeineke |
377 |
endif |
632 |
|
|
enddo inner |
633 |
|
|
enddo |
634 |
|
|
|
635 |
|
|
point(nrow + 1) = nlist + 1 |
636 |
|
|
|
637 |
|
|
else !! (of update_check) |
638 |
|
|
|
639 |
|
|
! use the list to find the neighbors |
640 |
|
|
do i = 1, nrow |
641 |
|
|
JBEG = POINT(i) |
642 |
|
|
JEND = POINT(i+1) - 1 |
643 |
|
|
! check thiat molecule i has neighbors |
644 |
|
|
if (jbeg .le. jend) then |
645 |
|
|
|
646 |
|
|
do jnab = jbeg, jend |
647 |
|
|
j = list(jnab) |
648 |
|
|
|
649 |
|
|
call get_interatomic_vector(q_Row(:,i), q_Col(:,j), d, rijsq) |
650 |
|
|
call do_pair(i, j, rijsq, d, do_pot, do_stress, & |
651 |
chuckv |
441 |
u_l, A, f, t, pot_local) |
652 |
mmeineke |
377 |
|
653 |
|
|
enddo |
654 |
|
|
endif |
655 |
|
|
enddo |
656 |
|
|
endif |
657 |
|
|
|
658 |
|
|
#else |
659 |
|
|
|
660 |
|
|
if (update_nlist) then |
661 |
chrisfen |
872 |
|
662 |
mmeineke |
377 |
! save current configuration, contruct neighbor list, |
663 |
|
|
! and calculate forces |
664 |
mmeineke |
459 |
call saveNeighborList(natoms, q) |
665 |
mmeineke |
377 |
|
666 |
|
|
neighborListSize = size(list) |
667 |
|
|
|
668 |
|
|
nlist = 0 |
669 |
|
|
|
670 |
|
|
do i = 1, natoms-1 |
671 |
|
|
point(i) = nlist + 1 |
672 |
|
|
|
673 |
|
|
inner: do j = i+1, natoms |
674 |
|
|
|
675 |
chuckv |
388 |
if (skipThisPair(i,j)) cycle inner |
676 |
|
|
|
677 |
mmeineke |
377 |
call get_interatomic_vector(q(:,i), q(:,j), d, rijsq) |
678 |
|
|
|
679 |
chuckv |
388 |
|
680 |
mmeineke |
626 |
if (rijsq < rlistsq) then |
681 |
mmeineke |
377 |
|
682 |
|
|
nlist = nlist + 1 |
683 |
|
|
|
684 |
|
|
if (nlist > neighborListSize) then |
685 |
|
|
call expandNeighborList(natoms, listerror) |
686 |
|
|
if (listerror /= 0) then |
687 |
|
|
error = -1 |
688 |
|
|
write(DEFAULT_ERROR,*) "ERROR: nlist > list size and max allocations exceeded." |
689 |
|
|
return |
690 |
|
|
end if |
691 |
|
|
neighborListSize = size(list) |
692 |
|
|
endif |
693 |
|
|
|
694 |
|
|
list(nlist) = j |
695 |
|
|
|
696 |
mmeineke |
626 |
call do_pair(i, j, rijsq, d, do_pot, do_stress, & |
697 |
chuckv |
441 |
u_l, A, f, t, pot) |
698 |
mmeineke |
626 |
|
699 |
mmeineke |
377 |
endif |
700 |
|
|
enddo inner |
701 |
|
|
enddo |
702 |
|
|
|
703 |
|
|
point(natoms) = nlist + 1 |
704 |
|
|
|
705 |
|
|
else !! (update) |
706 |
|
|
|
707 |
|
|
! use the list to find the neighbors |
708 |
|
|
do i = 1, natoms-1 |
709 |
|
|
JBEG = POINT(i) |
710 |
|
|
JEND = POINT(i+1) - 1 |
711 |
|
|
! check thiat molecule i has neighbors |
712 |
|
|
if (jbeg .le. jend) then |
713 |
|
|
|
714 |
|
|
do jnab = jbeg, jend |
715 |
|
|
j = list(jnab) |
716 |
|
|
|
717 |
|
|
call get_interatomic_vector(q(:,i), q(:,j), d, rijsq) |
718 |
|
|
call do_pair(i, j, rijsq, d, do_pot, do_stress, & |
719 |
chuckv |
441 |
u_l, A, f, t, pot) |
720 |
mmeineke |
377 |
|
721 |
|
|
enddo |
722 |
|
|
endif |
723 |
|
|
enddo |
724 |
|
|
endif |
725 |
|
|
|
726 |
|
|
#endif |
727 |
|
|
|
728 |
|
|
! phew, done with main loop. |
729 |
chuckv |
694 |
|
730 |
|
|
!! Do timing |
731 |
|
|
#ifdef PROFILE |
732 |
|
|
call cpu_time(forceTimeFinal) |
733 |
|
|
forceTime = forceTime + forceTimeFinal - forceTimeInitial |
734 |
|
|
#endif |
735 |
|
|
|
736 |
|
|
|
737 |
mmeineke |
377 |
#ifdef IS_MPI |
738 |
|
|
!!distribute forces |
739 |
chuckv |
438 |
|
740 |
|
|
f_temp = 0.0_dp |
741 |
|
|
call scatter(f_Row,f_temp,plan_row3d) |
742 |
|
|
do i = 1,nlocal |
743 |
|
|
f(1:3,i) = f(1:3,i) + f_temp(1:3,i) |
744 |
|
|
end do |
745 |
|
|
|
746 |
|
|
f_temp = 0.0_dp |
747 |
mmeineke |
377 |
call scatter(f_Col,f_temp,plan_col3d) |
748 |
|
|
do i = 1,nlocal |
749 |
|
|
f(1:3,i) = f(1:3,i) + f_temp(1:3,i) |
750 |
|
|
end do |
751 |
|
|
|
752 |
chuckv |
900 |
if (FF_UsesDirectionalAtoms() .and. SIM_uses_directional_atoms) then |
753 |
chuckv |
438 |
t_temp = 0.0_dp |
754 |
|
|
call scatter(t_Row,t_temp,plan_row3d) |
755 |
|
|
do i = 1,nlocal |
756 |
|
|
t(1:3,i) = t(1:3,i) + t_temp(1:3,i) |
757 |
|
|
end do |
758 |
|
|
t_temp = 0.0_dp |
759 |
mmeineke |
377 |
call scatter(t_Col,t_temp,plan_col3d) |
760 |
|
|
|
761 |
|
|
do i = 1,nlocal |
762 |
|
|
t(1:3,i) = t(1:3,i) + t_temp(1:3,i) |
763 |
|
|
end do |
764 |
|
|
endif |
765 |
|
|
|
766 |
|
|
if (do_pot) then |
767 |
|
|
! scatter/gather pot_row into the members of my column |
768 |
|
|
call scatter(pot_Row, pot_Temp, plan_row) |
769 |
chuckv |
439 |
|
770 |
mmeineke |
377 |
! scatter/gather pot_local into all other procs |
771 |
|
|
! add resultant to get total pot |
772 |
|
|
do i = 1, nlocal |
773 |
|
|
pot_local = pot_local + pot_Temp(i) |
774 |
|
|
enddo |
775 |
chuckv |
439 |
|
776 |
|
|
pot_Temp = 0.0_DP |
777 |
mmeineke |
377 |
|
778 |
|
|
call scatter(pot_Col, pot_Temp, plan_col) |
779 |
|
|
do i = 1, nlocal |
780 |
|
|
pot_local = pot_local + pot_Temp(i) |
781 |
|
|
enddo |
782 |
chuckv |
439 |
|
783 |
mmeineke |
377 |
endif |
784 |
|
|
#endif |
785 |
|
|
|
786 |
chuckv |
900 |
if (FF_RequiresPostpairCalc() .and. SIM_requires_postpair_calc) then |
787 |
mmeineke |
377 |
|
788 |
chuckv |
900 |
if (FF_uses_RF .and. SIM_uses_RF) then |
789 |
mmeineke |
377 |
|
790 |
|
|
#ifdef IS_MPI |
791 |
|
|
call scatter(rf_Row,rf,plan_row3d) |
792 |
|
|
call scatter(rf_Col,rf_Temp,plan_col3d) |
793 |
|
|
do i = 1,nlocal |
794 |
|
|
rf(1:3,i) = rf(1:3,i) + rf_Temp(1:3,i) |
795 |
|
|
end do |
796 |
|
|
#endif |
797 |
|
|
|
798 |
chuckv |
898 |
do i = 1, nLocal |
799 |
mmeineke |
377 |
|
800 |
|
|
rfpot = 0.0_DP |
801 |
|
|
#ifdef IS_MPI |
802 |
|
|
me_i = atid_row(i) |
803 |
|
|
#else |
804 |
|
|
me_i = atid(i) |
805 |
|
|
#endif |
806 |
chuckv |
900 |
|
807 |
|
|
if (PropertyMap(me_i)%is_DP) then |
808 |
|
|
|
809 |
|
|
mu_i = PropertyMap(me_i)%dipole_moment |
810 |
|
|
|
811 |
mmeineke |
377 |
!! The reaction field needs to include a self contribution |
812 |
|
|
!! to the field: |
813 |
chuckv |
900 |
call accumulate_self_rf(i, mu_i, u_l) |
814 |
mmeineke |
377 |
!! Get the reaction field contribution to the |
815 |
|
|
!! potential and torques: |
816 |
|
|
call reaction_field_final(i, mu_i, u_l, rfpot, t, do_pot) |
817 |
|
|
#ifdef IS_MPI |
818 |
|
|
pot_local = pot_local + rfpot |
819 |
|
|
#else |
820 |
|
|
pot = pot + rfpot |
821 |
|
|
|
822 |
|
|
#endif |
823 |
|
|
endif |
824 |
|
|
enddo |
825 |
|
|
endif |
826 |
|
|
endif |
827 |
|
|
|
828 |
|
|
|
829 |
|
|
#ifdef IS_MPI |
830 |
|
|
|
831 |
|
|
if (do_pot) then |
832 |
chuckv |
441 |
pot = pot + pot_local |
833 |
mmeineke |
377 |
!! we assume the c code will do the allreduce to get the total potential |
834 |
|
|
!! we could do it right here if we needed to... |
835 |
|
|
endif |
836 |
|
|
|
837 |
|
|
if (do_stress) then |
838 |
gezelter |
490 |
call mpi_allreduce(tau_Temp, tau, 9,mpi_double_precision,mpi_sum, & |
839 |
mmeineke |
377 |
mpi_comm_world,mpi_err) |
840 |
chuckv |
470 |
call mpi_allreduce(virial_Temp, virial,1,mpi_double_precision,mpi_sum, & |
841 |
mmeineke |
377 |
mpi_comm_world,mpi_err) |
842 |
|
|
endif |
843 |
|
|
|
844 |
|
|
#else |
845 |
|
|
|
846 |
|
|
if (do_stress) then |
847 |
|
|
tau = tau_Temp |
848 |
|
|
virial = virial_Temp |
849 |
|
|
endif |
850 |
mmeineke |
887 |
|
851 |
mmeineke |
377 |
#endif |
852 |
mmeineke |
887 |
|
853 |
|
|
|
854 |
|
|
|
855 |
mmeineke |
377 |
end subroutine do_force_loop |
856 |
|
|
|
857 |
chuckv |
441 |
subroutine do_pair(i, j, rijsq, d, do_pot, do_stress, u_l, A, f, t, pot) |
858 |
mmeineke |
377 |
|
859 |
|
|
real( kind = dp ) :: pot |
860 |
chuckv |
898 |
real( kind = dp ), dimension(3,nLocal) :: u_l |
861 |
|
|
real (kind=dp), dimension(9,nLocal) :: A |
862 |
|
|
real (kind=dp), dimension(3,nLocal) :: f |
863 |
|
|
real (kind=dp), dimension(3,nLocal) :: t |
864 |
mmeineke |
377 |
|
865 |
|
|
logical, intent(inout) :: do_pot, do_stress |
866 |
|
|
integer, intent(in) :: i, j |
867 |
|
|
real ( kind = dp ), intent(inout) :: rijsq |
868 |
|
|
real ( kind = dp ) :: r |
869 |
|
|
real ( kind = dp ), intent(inout) :: d(3) |
870 |
|
|
logical :: is_LJ_i, is_LJ_j |
871 |
|
|
logical :: is_DP_i, is_DP_j |
872 |
|
|
logical :: is_GB_i, is_GB_j |
873 |
chuckv |
648 |
logical :: is_EAM_i,is_EAM_j |
874 |
mmeineke |
377 |
logical :: is_Sticky_i, is_Sticky_j |
875 |
|
|
integer :: me_i, me_j |
876 |
chuckv |
894 |
integer :: propPack_i |
877 |
|
|
integer :: propPack_j |
878 |
mmeineke |
377 |
r = sqrt(rijsq) |
879 |
|
|
|
880 |
|
|
#ifdef IS_MPI |
881 |
gezelter |
490 |
if (tagRow(i) .eq. tagColumn(j)) then |
882 |
|
|
write(0,*) 'do_pair is doing', i , j, tagRow(i), tagColumn(j) |
883 |
|
|
endif |
884 |
mmeineke |
377 |
|
885 |
|
|
me_i = atid_row(i) |
886 |
|
|
me_j = atid_col(j) |
887 |
|
|
|
888 |
|
|
#else |
889 |
|
|
|
890 |
|
|
me_i = atid(i) |
891 |
|
|
me_j = atid(j) |
892 |
|
|
|
893 |
|
|
#endif |
894 |
chuckv |
894 |
|
895 |
chuckv |
900 |
if (FF_uses_LJ .and. SIM_uses_LJ) then |
896 |
mmeineke |
377 |
|
897 |
chuckv |
900 |
if ( PropertyMap(me_i)%is_LJ .and. PropertyMap(me_j)%is_LJ ) & |
898 |
mmeineke |
377 |
call do_lj_pair(i, j, d, r, rijsq, pot, f, do_pot, do_stress) |
899 |
chuckv |
894 |
|
900 |
mmeineke |
377 |
endif |
901 |
|
|
|
902 |
chuckv |
900 |
if (FF_uses_dipoles .and. SIM_uses_dipoles) then |
903 |
mmeineke |
377 |
|
904 |
chuckv |
900 |
if ( PropertyMap(me_i)%is_DP .and. PropertyMap(me_j)%is_DP) then |
905 |
gezelter |
462 |
call do_dipole_pair(i, j, d, r, rijsq, pot, u_l, f, t, & |
906 |
mmeineke |
377 |
do_pot, do_stress) |
907 |
chuckv |
900 |
if (FF_uses_RF .and. SIM_uses_RF) then |
908 |
mmeineke |
377 |
call accumulate_rf(i, j, r, u_l) |
909 |
|
|
call rf_correct_forces(i, j, d, r, u_l, f, do_stress) |
910 |
|
|
endif |
911 |
|
|
|
912 |
|
|
endif |
913 |
|
|
endif |
914 |
|
|
|
915 |
chuckv |
900 |
if (FF_uses_Sticky .and. SIM_uses_sticky) then |
916 |
mmeineke |
377 |
|
917 |
chuckv |
900 |
if ( PropertyMap(me_i)%is_Sticky .and. PropertyMap(me_j)%is_Sticky) then |
918 |
mmeineke |
377 |
call do_sticky_pair(i, j, d, r, rijsq, A, pot, f, t, & |
919 |
|
|
do_pot, do_stress) |
920 |
|
|
endif |
921 |
|
|
endif |
922 |
|
|
|
923 |
|
|
|
924 |
chuckv |
900 |
if (FF_uses_GB .and. SIM_uses_GB) then |
925 |
mmeineke |
377 |
|
926 |
chuckv |
900 |
if ( PropertyMap(me_i)%is_GB .and. PropertyMap(me_j)%is_GB) then |
927 |
mmeineke |
377 |
call do_gb_pair(i, j, d, r, rijsq, u_l, pot, f, t, & |
928 |
|
|
do_pot, do_stress) |
929 |
|
|
endif |
930 |
chuckv |
894 |
|
931 |
mmeineke |
377 |
endif |
932 |
|
|
|
933 |
mmeineke |
597 |
|
934 |
chuckv |
648 |
|
935 |
chuckv |
900 |
if (FF_uses_EAM .and. SIM_uses_EAM) then |
936 |
chuckv |
648 |
|
937 |
chuckv |
900 |
if ( PropertyMap(me_i)%is_EAM .and. PropertyMap(me_j)%is_EAM) then |
938 |
chuckv |
895 |
call do_eam_pair(i, j, d, r, rijsq, pot, f, do_pot, do_stress) |
939 |
|
|
endif |
940 |
chuckv |
894 |
|
941 |
chuckv |
648 |
endif |
942 |
mmeineke |
597 |
|
943 |
mmeineke |
377 |
end subroutine do_pair |
944 |
|
|
|
945 |
|
|
|
946 |
chuckv |
631 |
|
947 |
chuckv |
648 |
subroutine do_prepair(i, j, rijsq, d, do_pot, do_stress, u_l, A, f, t, pot) |
948 |
chuckv |
631 |
real( kind = dp ) :: pot |
949 |
chuckv |
898 |
real( kind = dp ), dimension(3,nLocal) :: u_l |
950 |
|
|
real (kind=dp), dimension(9,nLocal) :: A |
951 |
|
|
real (kind=dp), dimension(3,nLocal) :: f |
952 |
|
|
real (kind=dp), dimension(3,nLocal) :: t |
953 |
chuckv |
631 |
|
954 |
|
|
logical, intent(inout) :: do_pot, do_stress |
955 |
|
|
integer, intent(in) :: i, j |
956 |
|
|
real ( kind = dp ), intent(inout) :: rijsq |
957 |
|
|
real ( kind = dp ) :: r |
958 |
|
|
real ( kind = dp ), intent(inout) :: d(3) |
959 |
|
|
|
960 |
|
|
logical :: is_EAM_i, is_EAM_j |
961 |
|
|
|
962 |
|
|
integer :: me_i, me_j |
963 |
|
|
|
964 |
|
|
r = sqrt(rijsq) |
965 |
|
|
|
966 |
chuckv |
669 |
|
967 |
chuckv |
631 |
#ifdef IS_MPI |
968 |
|
|
if (tagRow(i) .eq. tagColumn(j)) then |
969 |
|
|
write(0,*) 'do_pair is doing', i , j, tagRow(i), tagColumn(j) |
970 |
|
|
endif |
971 |
|
|
|
972 |
|
|
me_i = atid_row(i) |
973 |
|
|
me_j = atid_col(j) |
974 |
|
|
|
975 |
|
|
#else |
976 |
|
|
|
977 |
|
|
me_i = atid(i) |
978 |
|
|
me_j = atid(j) |
979 |
|
|
|
980 |
|
|
#endif |
981 |
chuckv |
673 |
|
982 |
chuckv |
900 |
if (FF_uses_EAM .and. SIM_uses_EAM) then |
983 |
|
|
|
984 |
|
|
if (PropertyMap(me_i)%is_EAM .and. PropertyMap(me_j)%is_EAM) & |
985 |
chuckv |
648 |
call calc_EAM_prepair_rho(i, j, d, r, rijsq ) |
986 |
chuckv |
900 |
|
987 |
chuckv |
631 |
endif |
988 |
chuckv |
900 |
|
989 |
chuckv |
673 |
end subroutine do_prepair |
990 |
chuckv |
648 |
|
991 |
|
|
|
992 |
|
|
|
993 |
chuckv |
673 |
|
994 |
chuckv |
648 |
subroutine do_preforce(nlocal,pot) |
995 |
|
|
integer :: nlocal |
996 |
|
|
real( kind = dp ) :: pot |
997 |
|
|
|
998 |
chuckv |
900 |
if (FF_uses_EAM .and. SIM_uses_EAM) then |
999 |
chuckv |
669 |
call calc_EAM_preforce_Frho(nlocal,pot) |
1000 |
|
|
endif |
1001 |
chuckv |
648 |
|
1002 |
|
|
|
1003 |
chuckv |
631 |
end subroutine do_preforce |
1004 |
|
|
|
1005 |
|
|
|
1006 |
mmeineke |
377 |
subroutine get_interatomic_vector(q_i, q_j, d, r_sq) |
1007 |
|
|
|
1008 |
|
|
real (kind = dp), dimension(3) :: q_i |
1009 |
|
|
real (kind = dp), dimension(3) :: q_j |
1010 |
|
|
real ( kind = dp ), intent(out) :: r_sq |
1011 |
gezelter |
571 |
real( kind = dp ) :: d(3), scaled(3) |
1012 |
|
|
integer i |
1013 |
|
|
|
1014 |
chuckv |
482 |
d(1:3) = q_j(1:3) - q_i(1:3) |
1015 |
gezelter |
571 |
|
1016 |
mmeineke |
377 |
! Wrap back into periodic box if necessary |
1017 |
chuckv |
900 |
if ( SIM_uses_PBC ) then |
1018 |
mmeineke |
393 |
|
1019 |
gezelter |
571 |
if( .not.boxIsOrthorhombic ) then |
1020 |
|
|
! calc the scaled coordinates. |
1021 |
|
|
|
1022 |
mmeineke |
572 |
scaled = matmul(HmatInv, d) |
1023 |
gezelter |
571 |
|
1024 |
|
|
! wrap the scaled coordinates |
1025 |
|
|
|
1026 |
mmeineke |
572 |
scaled = scaled - anint(scaled) |
1027 |
|
|
|
1028 |
gezelter |
571 |
|
1029 |
|
|
! calc the wrapped real coordinates from the wrapped scaled |
1030 |
|
|
! coordinates |
1031 |
|
|
|
1032 |
mmeineke |
572 |
d = matmul(Hmat,scaled) |
1033 |
gezelter |
571 |
|
1034 |
|
|
else |
1035 |
|
|
! calc the scaled coordinates. |
1036 |
|
|
|
1037 |
|
|
do i = 1, 3 |
1038 |
|
|
scaled(i) = d(i) * HmatInv(i,i) |
1039 |
|
|
|
1040 |
|
|
! wrap the scaled coordinates |
1041 |
|
|
|
1042 |
|
|
scaled(i) = scaled(i) - anint(scaled(i)) |
1043 |
|
|
|
1044 |
|
|
! calc the wrapped real coordinates from the wrapped scaled |
1045 |
|
|
! coordinates |
1046 |
|
|
|
1047 |
|
|
d(i) = scaled(i)*Hmat(i,i) |
1048 |
|
|
enddo |
1049 |
|
|
endif |
1050 |
mmeineke |
393 |
|
1051 |
mmeineke |
377 |
endif |
1052 |
gezelter |
571 |
|
1053 |
mmeineke |
377 |
r_sq = dot_product(d,d) |
1054 |
gezelter |
571 |
|
1055 |
mmeineke |
377 |
end subroutine get_interatomic_vector |
1056 |
gezelter |
571 |
|
1057 |
mmeineke |
377 |
subroutine zero_work_arrays() |
1058 |
|
|
|
1059 |
|
|
#ifdef IS_MPI |
1060 |
|
|
|
1061 |
|
|
q_Row = 0.0_dp |
1062 |
|
|
q_Col = 0.0_dp |
1063 |
|
|
|
1064 |
|
|
u_l_Row = 0.0_dp |
1065 |
|
|
u_l_Col = 0.0_dp |
1066 |
|
|
|
1067 |
|
|
A_Row = 0.0_dp |
1068 |
|
|
A_Col = 0.0_dp |
1069 |
|
|
|
1070 |
|
|
f_Row = 0.0_dp |
1071 |
|
|
f_Col = 0.0_dp |
1072 |
|
|
f_Temp = 0.0_dp |
1073 |
|
|
|
1074 |
|
|
t_Row = 0.0_dp |
1075 |
|
|
t_Col = 0.0_dp |
1076 |
|
|
t_Temp = 0.0_dp |
1077 |
|
|
|
1078 |
|
|
pot_Row = 0.0_dp |
1079 |
|
|
pot_Col = 0.0_dp |
1080 |
|
|
pot_Temp = 0.0_dp |
1081 |
|
|
|
1082 |
|
|
rf_Row = 0.0_dp |
1083 |
|
|
rf_Col = 0.0_dp |
1084 |
|
|
rf_Temp = 0.0_dp |
1085 |
|
|
|
1086 |
|
|
#endif |
1087 |
|
|
|
1088 |
chuckv |
673 |
|
1089 |
chuckv |
900 |
if (FF_uses_EAM .and. SIM_uses_EAM) then |
1090 |
chuckv |
673 |
call clean_EAM() |
1091 |
|
|
endif |
1092 |
|
|
|
1093 |
|
|
|
1094 |
|
|
|
1095 |
|
|
|
1096 |
|
|
|
1097 |
mmeineke |
377 |
rf = 0.0_dp |
1098 |
|
|
tau_Temp = 0.0_dp |
1099 |
|
|
virial_Temp = 0.0_dp |
1100 |
|
|
end subroutine zero_work_arrays |
1101 |
|
|
|
1102 |
|
|
function skipThisPair(atom1, atom2) result(skip_it) |
1103 |
|
|
integer, intent(in) :: atom1 |
1104 |
|
|
integer, intent(in), optional :: atom2 |
1105 |
|
|
logical :: skip_it |
1106 |
|
|
integer :: unique_id_1, unique_id_2 |
1107 |
chuckv |
388 |
integer :: me_i,me_j |
1108 |
mmeineke |
377 |
integer :: i |
1109 |
|
|
|
1110 |
|
|
skip_it = .false. |
1111 |
|
|
|
1112 |
|
|
!! there are a number of reasons to skip a pair or a particle |
1113 |
|
|
!! mostly we do this to exclude atoms who are involved in short |
1114 |
|
|
!! range interactions (bonds, bends, torsions), but we also need |
1115 |
|
|
!! to exclude some overcounted interactions that result from |
1116 |
|
|
!! the parallel decomposition |
1117 |
|
|
|
1118 |
|
|
#ifdef IS_MPI |
1119 |
|
|
!! in MPI, we have to look up the unique IDs for each atom |
1120 |
|
|
unique_id_1 = tagRow(atom1) |
1121 |
|
|
#else |
1122 |
|
|
!! in the normal loop, the atom numbers are unique |
1123 |
|
|
unique_id_1 = atom1 |
1124 |
|
|
#endif |
1125 |
chuckv |
388 |
|
1126 |
mmeineke |
377 |
!! We were called with only one atom, so just check the global exclude |
1127 |
|
|
!! list for this atom |
1128 |
|
|
if (.not. present(atom2)) then |
1129 |
|
|
do i = 1, nExcludes_global |
1130 |
|
|
if (excludesGlobal(i) == unique_id_1) then |
1131 |
|
|
skip_it = .true. |
1132 |
|
|
return |
1133 |
|
|
end if |
1134 |
|
|
end do |
1135 |
|
|
return |
1136 |
|
|
end if |
1137 |
|
|
|
1138 |
|
|
#ifdef IS_MPI |
1139 |
|
|
unique_id_2 = tagColumn(atom2) |
1140 |
|
|
#else |
1141 |
|
|
unique_id_2 = atom2 |
1142 |
|
|
#endif |
1143 |
chuckv |
441 |
|
1144 |
mmeineke |
377 |
#ifdef IS_MPI |
1145 |
|
|
!! this situation should only arise in MPI simulations |
1146 |
|
|
if (unique_id_1 == unique_id_2) then |
1147 |
|
|
skip_it = .true. |
1148 |
|
|
return |
1149 |
|
|
end if |
1150 |
|
|
|
1151 |
|
|
!! this prevents us from doing the pair on multiple processors |
1152 |
|
|
if (unique_id_1 < unique_id_2) then |
1153 |
chuckv |
441 |
if (mod(unique_id_1 + unique_id_2,2) == 0) then |
1154 |
|
|
skip_it = .true. |
1155 |
|
|
return |
1156 |
|
|
endif |
1157 |
mmeineke |
377 |
else |
1158 |
chuckv |
441 |
if (mod(unique_id_1 + unique_id_2,2) == 1) then |
1159 |
|
|
skip_it = .true. |
1160 |
|
|
return |
1161 |
|
|
endif |
1162 |
mmeineke |
377 |
endif |
1163 |
|
|
#endif |
1164 |
chuckv |
441 |
|
1165 |
mmeineke |
377 |
!! the rest of these situations can happen in all simulations: |
1166 |
|
|
do i = 1, nExcludes_global |
1167 |
|
|
if ((excludesGlobal(i) == unique_id_1) .or. & |
1168 |
|
|
(excludesGlobal(i) == unique_id_2)) then |
1169 |
|
|
skip_it = .true. |
1170 |
|
|
return |
1171 |
|
|
endif |
1172 |
|
|
enddo |
1173 |
chuckv |
441 |
|
1174 |
mmeineke |
377 |
do i = 1, nExcludes_local |
1175 |
|
|
if (excludesLocal(1,i) == unique_id_1) then |
1176 |
|
|
if (excludesLocal(2,i) == unique_id_2) then |
1177 |
|
|
skip_it = .true. |
1178 |
|
|
return |
1179 |
|
|
endif |
1180 |
|
|
else |
1181 |
|
|
if (excludesLocal(1,i) == unique_id_2) then |
1182 |
|
|
if (excludesLocal(2,i) == unique_id_1) then |
1183 |
|
|
skip_it = .true. |
1184 |
|
|
return |
1185 |
|
|
endif |
1186 |
|
|
endif |
1187 |
|
|
endif |
1188 |
|
|
end do |
1189 |
|
|
|
1190 |
|
|
return |
1191 |
|
|
end function skipThisPair |
1192 |
|
|
|
1193 |
|
|
function FF_UsesDirectionalAtoms() result(doesit) |
1194 |
|
|
logical :: doesit |
1195 |
|
|
doesit = FF_uses_dipoles .or. FF_uses_sticky .or. & |
1196 |
|
|
FF_uses_GB .or. FF_uses_RF |
1197 |
|
|
end function FF_UsesDirectionalAtoms |
1198 |
|
|
|
1199 |
|
|
function FF_RequiresPrepairCalc() result(doesit) |
1200 |
|
|
logical :: doesit |
1201 |
|
|
doesit = FF_uses_EAM |
1202 |
|
|
end function FF_RequiresPrepairCalc |
1203 |
|
|
|
1204 |
|
|
function FF_RequiresPostpairCalc() result(doesit) |
1205 |
|
|
logical :: doesit |
1206 |
|
|
doesit = FF_uses_RF |
1207 |
|
|
end function FF_RequiresPostpairCalc |
1208 |
|
|
|
1209 |
chuckv |
883 |
#ifdef PROFILE |
1210 |
mmeineke |
891 |
function getforcetime() result(totalforcetime) |
1211 |
chuckv |
883 |
real(kind=dp) :: totalforcetime |
1212 |
|
|
totalforcetime = forcetime |
1213 |
|
|
end function getforcetime |
1214 |
|
|
#endif |
1215 |
|
|
|
1216 |
chuckv |
673 |
!! This cleans componets of force arrays belonging only to fortran |
1217 |
|
|
|
1218 |
mmeineke |
377 |
end module do_Forces |