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!! @author Charles F. Vardeman II |
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!! @author Matthew Meineke |
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!! @author J. Daniel Gezelter |
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!! @version $Id: neighborLists.F90,v 1.1.1.1 2003-03-21 17:42:12 mmeineke Exp $, |
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!! @version $Id: neighborLists.F90,v 1.5 2003-08-08 21:22:37 chuckv Exp $, |
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module neighborLists |
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integer, dimension(:),public, pointer :: list => null() |
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!! Position array of previous positions for check. Allocated first time |
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!! into saveNeighborList. |
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< |
real( kind = dp ), dimension(:,:), allocatable , save :: q0 |
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real( kind = dp ), dimension(:,:), allocatable, save :: q0 |
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!! Current list size |
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integer, save :: listSize |
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!--------------MODULE ACCESS--------------------------> |
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.not. associated(list) ) then |
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allocate(point(natoms),stat=alloc_error) |
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if (alloc_error /= 0) then |
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+ |
write(default_error,*) & |
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"ExpandNeighborLists: Error in allocating point" |
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error = -1 |
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return |
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end if |
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allocate(list(listMultiplier * natoms),stat=alloc_error) |
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if (alloc_error /= 0) then |
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write(default_error,*) & |
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"ExpandNeighborLists: Error in allocating list" |
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error = -1 |
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return |
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end if |
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.not. associated(list) ) then |
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allocate(point(getNRow(plan_row)),stat=alloc_error) |
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if (alloc_error /= 0) then |
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< |
error = -1 |
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> |
write(default_error,*) & |
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> |
"ExpandNeighborLists: Error in allocating MPI point" |
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> |
error = -1 |
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return |
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end if |
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allocate(list(listMultiplier * getNCol(plan_col)),stat=alloc_error) |
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if (alloc_error /= 0) then |
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write(default_error,*) & |
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"ExpandNeighborLists: Error in allocating MPI list" |
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error = -1 |
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return |
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end if |
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! Check to see if we have exceeded the maximum number of allocations. |
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if (nAllocations > maxAllocations) then |
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write(default_error,*) & |
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"ExpandNeighborList: exceeded maximum number of re-allocations" |
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error = -1 |
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return |
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else !! Expand the list. |
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oldSize = size(list) |
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+ |
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#ifdef IS_MPI !! MPI |
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newSize = listMultiplier * getNCol(plan_col) + oldSize |
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#else |
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!! checks to see if any long range particle has moved |
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!! through the neighbor list skin thickness. |
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< |
subroutine checkNeighborList(natoms, q, rcut, rlist, update_nlist) |
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> |
subroutine checkNeighborList(natoms, q, listSkin, update_nlist) |
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integer :: natoms |
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< |
real(kind = dp), intent(in) :: rcut, rlist |
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real(kind = dp), intent(in) :: listSkin |
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real( kind = dp ), dimension(:,:) :: q |
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integer :: i |
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real( kind = DP ) :: dispmx |
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logical, intent(out) :: update_nlist |
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real( kind = DP ) :: dispmx_tmp |
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– |
real( kind = dp ) :: skin_thickness |
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integer :: nlocal |
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< |
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> |
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> |
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nlocal = natoms |
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– |
skin_thickness = rlist - rcut |
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dispmx = 0.0E0_DP |
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!! calculate the largest displacement of any atom in any direction |
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!! If we have changed the particle idents, then we need to update |
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< |
if (.not. allocated(q0) .or. size(q0) /= nlocal) then |
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> |
if (.not. allocated(q0) .or. size(q0,2) /= nlocal) then |
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update_nlist = .true. |
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return |
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end if |
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< |
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> |
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> |
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#ifdef MPI |
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dispmx_tmp = 0.0E0_DP |
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#endif |
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+ |
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!! a conservative test of list skin crossings |
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dispmx = 2.0E0_DP * sqrt (3.0E0_DP * dispmx * dispmx) |
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|
| 203 |
< |
update_nlist = (dispmx.gt.(skin_thickness)) |
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> |
update_nlist = (dispmx.gt.listSkin) |
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< |
end subroutine checkNeighborList |
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> |
end subroutine checkNeighborList |
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!! Saves neighbor list for comparison in check. |
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!! Save_neighborList will work even if the number of |
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!! local atoms has changed. |
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< |
subroutine saveNeighborList(q) |
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< |
real(kind = dp ), dimension(:,:), intent(in) :: q |
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> |
subroutine saveNeighborList(natoms, q) |
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> |
|
| 213 |
> |
integer :: natoms |
| 214 |
> |
real(kind = dp ), dimension(3,natoms), intent(in) :: q |
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integer :: list_size |
| 216 |
+ |
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+ |
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!! get size of list |
| 220 |
< |
list_size = size(q) |
| 220 |
> |
list_size = natoms |
| 221 |
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| 222 |
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if (.not. allocated(q0)) then |
| 223 |
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allocate(q0(3,list_size)) |
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< |
else if( list_size > size(q0)) then |
| 224 |
> |
else if( list_size > size(q0,2)) then |
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deallocate(q0) |
| 226 |
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allocate(q0(3,list_size)) |
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endif |
