working on adding GofRtheta and GofRomega additional work on randomBilayer
removed the randombilayer header
edited the makefile to add randomBilayer to the build. Also move the random bilayer builder from bilayerSys to randomBilayer
added a more verbose error message in SimInfo. Added a more informative error message in InitializeFromFile
added the following parameters to BASS: * useInitialExtendedSystemState * orthoBoxTolerance * useIntiTime => useInitialTime
some work on trying to find the compression bug
Portability fixes
added routines for the sysbuilder to work with simSetup remved the QuickBass routines, and had all parsing go through SimSetup. LatticeBilayer is in complete working order now.
fixes for configure, sysBuild
put QuickBass, MoLocator, and latticeBuilder into a Builder Library overhauled latticeBilayer into its own program. Removed sysBuild from the Makefile
work on bilayer builder
fixes for configure
Added a bunch of Make.dep files to CVS
add conserved quantity to statWriter fix bug of vector wrapping at NPTi
Changes to autoconf / configure method of configuring OOPSE
added define statemewnt to Statwriter and Dumpwriter to handle files larger than 2 gb. commented out some print statements in Zconstraint hard coding some system init into bilayer.sys
More FreeBSD fixes
updated the Changelog. added some bug fixes for setting the random number generator seed value. fixed a bug where ghostbend atom b was not being set. ( recent bug from SimState conversion)
quick makefile fix, in make links. added -f to ln -s.
Fixed sysBuild -bilayer works. Nanobuilder still broke.
Added comment line for getgetopt.
*** empty log message ***
commit makefile
Arranged sysbuilder into a subdirectory. Fixed some of sysbuilder to work with new atom allocation in libmdtools.