more bug fixes...

fixed a bug in the torsions.

Fixed bugs in atype_module.F90
atype_module.F90:new_atype: status was reused for force field checks, created
new variable FFcheckStatus to be result of FF checks.

Fixed bugs. Single version now runs w/o segfault. Still a conservation of energy bug.
do_Forces.F90: Fixed pot not being passed to do_pair.
neighborLists.F90: Fixed bugs in checkNeighborLists
atype_module.F90: Fixed bug with allocating atypes on each new_atype call.Now checks to see if atypes is null, then calles initialize(16).
vector_class.F90: Fixed some bugs with how MatchList was being allocated.

some initial bug fixes

 last little changes before compiling and debuging

getNlocal no longer in force_globals

adding more to the interface

working on the fortran init ForceField interface.

*** empty log message ***

Updated the Makefile to contain all of the new fortran

deprecated the ssd forcefield in C++

fixed some bugs in BendStamp from when Ghost Bend was implemented.

initialization routines, bug fixes, exclude lists

forceGlobals is gone (part3)

bye bye atypeGlobals (part2)

fixes for major rewrite

MPI bug fix

Massive sticky rewrite

Fixed mixing list to work with new atypes using vector class.

Added allocation of module arrays.

Fixed bugs, added logical routines

Fixed a bug

Bunch o' stuff, particularly the vector_class.F90 module

Changed generic lists so they work correctly

Added ghostBend into SimSetup. only need to add awareness to TraPPE_Ex

More changes to code. Hopefully these will commit smoothly.

Removed extra copy of dipole dipole

Added stuff for Dipole/Dipole and ReactionField

added fortranWrappers and Forcefield.cpp to the makefile

More code clean-up.

dded more static arrays to the Atom class;

finished conversion of all function wrapping into fortranWrappers.cpp and .hpp respectively

Changed code to use one generic force loop. Only one super atype that
has all information is now used.

Made changes to lj_FF.cpp to pass stress tensor.

Changed lj_FF to use new neighbor list module.

fixed some changes to the Globals in libBASS

oose and oopse build and distribute!

oose builds and links
oopse builds but can't find mpich++

added mpi for libmdCode (still working out the kinks)

working on getting this distribution working

libBASS and libmpiBASS are completely self encapsulated.

Successfully added all the source for libBASS