| 592 |
|
|
| 593 |
|
simnfo->refreshSim(); |
| 594 |
|
|
| 595 |
< |
if( !stcmp( simnfo->mixingRule, "standard") ){ |
| 595 |
> |
if( !strcmp( simnfo->mixingRule, "standard") ){ |
| 596 |
|
the_ff->initForceField( LB_MIXING_RULE ); |
| 597 |
|
} |
| 598 |
< |
else if( !stcmp( simnfo->mixingRule, "explicit") ){ |
| 598 |
> |
else if( !strcmp( simnfo->mixingRule, "explicit") ){ |
| 599 |
|
the_ff->initForceField( EXPLICIT_MIXING_RULE ); |
| 600 |
|
} |
| 601 |
|
else{ |
| 699 |
|
|
| 700 |
|
void SimSetup::makeBonds( void ){ |
| 701 |
|
|
| 702 |
< |
int i, j, k, index, offset, molIndex; |
| 702 |
> |
int i, j, k, index, offset, molIndex, exI, exJ, tempEx; |
| 703 |
|
bond_pair* the_bonds; |
| 704 |
|
BondStamp* current_bond; |
| 705 |
|
|
| 766 |
|
|
| 767 |
|
void SimSetup::makeBends( void ){ |
| 768 |
|
|
| 769 |
< |
int i, j, k, index, offset, molIndex, exI, exJ; |
| 769 |
> |
int i, j, k, index, offset, molIndex, exI, exJ, tempEx; |
| 770 |
|
bend_set* the_bends; |
| 771 |
|
BendStamp* current_bend; |
| 772 |
|
LinkedAssign* extras; |