1 |
< |
subroutine accumulate_rf(atom1, atom2, rij) |
1 |
> |
module reaction_field |
2 |
> |
use force_globals |
3 |
> |
use definitions |
4 |
> |
use atype_module |
5 |
> |
use vector_class |
6 |
> |
#ifdef IS_MPI |
7 |
> |
use mpiSimulation |
8 |
> |
#endif |
9 |
> |
implicit none |
10 |
|
|
11 |
< |
include 'sizes.inc' |
12 |
< |
include 'simulation.inc' |
11 |
> |
real(kind=dp), save :: rrf |
12 |
> |
real(kind=dp), save :: rt |
13 |
> |
real(kind=dp), save :: dielect |
14 |
> |
real(kind=dp), save :: rrfsq |
15 |
> |
real(kind=dp), save :: pre |
16 |
> |
logical, save :: rf_initialized = .false. |
17 |
|
|
18 |
< |
integer atom1, atom2 |
7 |
< |
double precision taper, rij |
8 |
< |
|
9 |
< |
if (rij.le.rrf) then |
10 |
< |
|
11 |
< |
if (rij.lt.rt) then |
12 |
< |
taper = 1.0d0 |
13 |
< |
else |
14 |
< |
taper = (rrf + 2.0d0*rij - 3.0d0*rt)*(rrf-rij)**2/ ((rrf-rt)**3) |
15 |
< |
endif |
16 |
< |
|
17 |
< |
rflx(atom1) = rflx(atom1) + ulx(atom2)*mu(atom2)*taper |
18 |
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rfly(atom1) = rfly(atom1) + uly(atom2)*mu(atom2)*taper |
19 |
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rflz(atom1) = rflz(atom1) + ulz(atom2)*mu(atom2)*taper |
20 |
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|
21 |
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rflx(atom2) = rflx(atom2) + ulx(atom1)*mu(atom1)*taper |
22 |
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rfly(atom2) = rfly(atom2) + uly(atom1)*mu(atom1)*taper |
23 |
< |
rflz(atom2) = rflz(atom2) + ulz(atom1)*mu(atom1)*taper |
24 |
< |
|
25 |
< |
endif |
26 |
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return |
18 |
> |
contains |
19 |
|
|
20 |
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end subroutine accumulate_rf |
20 |
> |
subroutine initialize_rf(this_rrf, this_rt, this_dielect) |
21 |
> |
real(kind=dp), intent(in) :: this_rrf, this_rt, this_dielect |
22 |
|
|
23 |
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subroutine accumulate_self_rf() |
24 |
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|
25 |
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include 'sizes.inc' |
26 |
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include 'simulation.inc' |
27 |
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|
28 |
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integer i, ia, a1, atype1 |
29 |
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logical is_dipole_atype |
30 |
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external is_dipole_atype |
31 |
< |
|
32 |
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do i = 1, nmol |
33 |
< |
do ia = 1, na(i) |
41 |
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a1 = atom_index(i,ia) |
42 |
< |
|
43 |
< |
atype1 = atype(a1) |
44 |
< |
|
45 |
< |
if (is_dipole_atype(atype1)) then |
46 |
< |
|
47 |
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rflx(a1) = rflx(a1) + ulx(a1)*mu(a1) |
48 |
< |
rfly(a1) = rfly(a1) + uly(a1)*mu(a1) |
49 |
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rflz(a1) = rflz(a1) + ulz(a1)*mu(a1) |
50 |
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|
51 |
< |
endif |
52 |
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enddo |
53 |
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enddo |
54 |
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|
55 |
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return |
56 |
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end subroutine accumulate_self_rf |
57 |
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|
58 |
< |
subroutine reaction_field(pot) |
23 |
> |
rrf = this_rrf |
24 |
> |
rt = this_rt |
25 |
> |
dielect = this_dielect |
26 |
> |
|
27 |
> |
rrfsq = rrf * rrf |
28 |
> |
pre = 14.38362d0*2.0d0*(dielect-1.0d0)/((2.0d0*dielect+1.0d0)*rrfsq*rrf) |
29 |
> |
|
30 |
> |
rf_initialized = .true. |
31 |
> |
|
32 |
> |
return |
33 |
> |
end subroutine initialize_rf |
34 |
|
|
35 |
< |
include 'sizes.inc' |
61 |
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include 'simulation.inc' |
62 |
< |
|
63 |
< |
double precision rrfsq, pre |
64 |
< |
integer i, ia, a1, atype1 |
65 |
< |
logical is_dipole_atype |
66 |
< |
external is_dipole_atype |
35 |
> |
subroutine accumulate_rf(atom1, atom2, rij, u_l) |
36 |
|
|
37 |
< |
! do single loop to compute torques on dipoles: |
38 |
< |
! pre converts from mu in units of debye to kcal/mol |
37 |
> |
integer, intent(in) :: atom1, atom2 |
38 |
> |
real (kind = dp), intent(in) :: rij |
39 |
> |
real (kind = dp), dimension(:,:) :: u_l |
40 |
|
|
41 |
< |
rrfsq = rrf * rrf |
42 |
< |
pre = 14.38362d0*2.0d0*(dielect-1.0d0)/((2.0d0*dielect+1.0d0)*rrfsq*rrf) |
43 |
< |
|
44 |
< |
do i = 1, nmol |
75 |
< |
do ia = 1, na(i) |
76 |
< |
a1 = atom_index(i,ia) |
41 |
> |
integer :: me1, me2 |
42 |
> |
real (kind = dp) :: taper, mu1, mu2 |
43 |
> |
real (kind = dp), dimension(3) :: ul1 |
44 |
> |
real (kind = dp), dimension(3) :: ul2 |
45 |
|
|
46 |
< |
atype1 = atype(a1) |
47 |
< |
|
48 |
< |
if (is_dipole_atype(atype1)) then |
49 |
< |
|
50 |
< |
! The torque contribution is dipole cross reaction_field |
51 |
< |
|
84 |
< |
tlx(a1) = tlx(a1) + pre*mu(a1)*(uly(a1)*rflz(a1) - ulz(a1)*rfly(a1)) |
85 |
< |
tly(a1) = tly(a1) + pre*mu(a1)*(ulz(a1)*rflx(a1) - ulx(a1)*rflz(a1)) |
86 |
< |
tlz(a1) = tlz(a1) + pre*mu(a1)*(ulx(a1)*rfly(a1) - uly(a1)*rflx(a1)) |
87 |
< |
|
88 |
< |
! the potential contribution is -1/2 dipole dot reaction_field |
46 |
> |
if (.not.rf_initialized) then |
47 |
> |
write(default_error,*) 'Reaction field not initialized!' |
48 |
> |
return |
49 |
> |
endif |
50 |
> |
|
51 |
> |
if (rij.le.rrf) then |
52 |
|
|
53 |
< |
pot = pot - 0.5d0 * pre * mu(a1) * & |
54 |
< |
(rflx(a1)*ulx(a1) + rfly(a1)*uly(a1) + rflz(a1)*ulz(a1)) |
55 |
< |
|
56 |
< |
endif |
57 |
< |
|
58 |
< |
enddo |
59 |
< |
enddo |
53 |
> |
if (rij.lt.rt) then |
54 |
> |
taper = 1.0d0 |
55 |
> |
else |
56 |
> |
taper = (rrf + 2.0d0*rij - 3.0d0*rt)*(rrf-rij)**2/ ((rrf-rt)**3) |
57 |
> |
endif |
58 |
> |
|
59 |
> |
#ifdef IS_MPI |
60 |
> |
me1 = atid_Row(atom1) |
61 |
> |
ul1(1) = u_l_Row(1,atom1) |
62 |
> |
ul1(2) = u_l_Row(2,atom1) |
63 |
> |
ul1(3) = u_l_Row(3,atom1) |
64 |
> |
|
65 |
> |
me2 = atid_Col(atom2) |
66 |
> |
ul2(1) = u_l_Col(1,atom2) |
67 |
> |
ul2(2) = u_l_Col(2,atom2) |
68 |
> |
ul2(3) = u_l_Col(3,atom2) |
69 |
> |
#else |
70 |
> |
me1 = atid(atom1) |
71 |
> |
ul1(1) = u_l(1,atom1) |
72 |
> |
ul1(2) = u_l(2,atom1) |
73 |
> |
ul1(3) = u_l(3,atom1) |
74 |
> |
|
75 |
> |
me2 = atid(atom2) |
76 |
> |
ul2(1) = u_l(1,atom2) |
77 |
> |
ul2(2) = u_l(2,atom2) |
78 |
> |
ul2(3) = u_l(3,atom2) |
79 |
> |
#endif |
80 |
> |
|
81 |
> |
call getElementProperty(atypes, me1, "dipole_moment", mu1) |
82 |
> |
call getElementProperty(atypes, me2, "dipole_moment", mu2) |
83 |
> |
|
84 |
> |
|
85 |
> |
#ifdef IS_MPI |
86 |
> |
rf_Row(1,atom1) = rf_Row(1,atom1) + ul2(1)*mu2*taper |
87 |
> |
rf_Row(2,atom1) = rf_Row(2,atom1) + ul2(2)*mu2*taper |
88 |
> |
rf_Row(3,atom1) = rf_Row(3,atom1) + ul2(3)*mu2*taper |
89 |
> |
|
90 |
> |
rf_Col(1,atom2) = rf_Col(1,atom2) + ul1(1)*mu2*taper |
91 |
> |
rf_Col(2,atom2) = rf_Col(2,atom2) + ul1(2)*mu2*taper |
92 |
> |
rf_Col(3,atom2) = rf_Col(3,atom2) + ul1(3)*mu2*taper |
93 |
> |
#else |
94 |
> |
rf(1,atom1) = rf(1,atom1) + ul2(1)*mu2*taper |
95 |
> |
rf(2,atom1) = rf(2,atom1) + ul2(2)*mu2*taper |
96 |
> |
rf(3,atom1) = rf(3,atom1) + ul2(3)*mu2*taper |
97 |
> |
|
98 |
> |
rf(1,atom2) = rf(1,atom2) + ul1(1)*mu2*taper |
99 |
> |
rf(2,atom2) = rf(2,atom2) + ul1(2)*mu2*taper |
100 |
> |
rf(3,atom2) = rf(3,atom2) + ul1(3)*mu2*taper |
101 |
> |
#endif |
102 |
> |
|
103 |
> |
endif |
104 |
> |
return |
105 |
> |
end subroutine accumulate_rf |
106 |
|
|
107 |
< |
end subroutine reaction_field |
108 |
< |
|
109 |
< |
subroutine rf_correct_forces(atom1, atom2, dx, dy, dz, rij) |
110 |
< |
include 'sizes.inc' |
111 |
< |
include 'simulation.inc' |
112 |
< |
|
113 |
< |
integer atom1, atom2 |
114 |
< |
double precision dtdr, rrfsq, prerf, rij |
115 |
< |
double precision dudx, dudy, dudz, u1dotu2, dx, dy, dz |
116 |
< |
|
117 |
< |
rrfsq = rrf * rrf |
118 |
< |
prerf = 14.38362d0*2.0d0*(dielect-1.0d0)/((2.0d0*dielect+1.0d0)*rrfsq*rrf) |
107 |
> |
subroutine accumulate_self_rf(atom1, mu1, u_l) |
108 |
> |
|
109 |
> |
integer, intent(in) :: atom1 |
110 |
> |
real(kind=dp), intent(in) :: mu1 |
111 |
> |
real(kind=dp), dimension(:,:) :: u_l |
112 |
> |
|
113 |
> |
!! should work for both MPI and non-MPI version since this is not pairwise. |
114 |
> |
rf(1,atom1) = rf(1,atom1) + u_l(1,atom1)*mu1 |
115 |
> |
rf(2,atom1) = rf(2,atom1) + u_l(2,atom1)*mu1 |
116 |
> |
rf(3,atom1) = rf(3,atom1) + u_l(3,atom1)*mu1 |
117 |
> |
|
118 |
> |
return |
119 |
> |
end subroutine accumulate_self_rf |
120 |
|
|
121 |
< |
if (rij.le.rrf) then |
121 |
> |
subroutine reaction_field_final(a1, mu1, u_l, rfpot, t, do_pot) |
122 |
> |
|
123 |
> |
integer, intent(in) :: a1 |
124 |
> |
real (kind=dp), intent(in) :: mu1 |
125 |
> |
real (kind=dp), intent(inout) :: rfpot |
126 |
> |
logical, intent(in) :: do_pot |
127 |
> |
real (kind = dp), dimension(:,:) :: u_l |
128 |
> |
real (kind = dp), dimension(:,:) :: t |
129 |
|
|
130 |
< |
! cubic taper |
131 |
< |
if (rij.lt.rt) then |
132 |
< |
dtdr = 0.0d0 |
133 |
< |
else |
117 |
< |
dtdr = 6.0d0*(rij*rij - rij*rt - rij*rrf +rrf*rt)/((rrf-rt)**3) |
118 |
< |
endif |
130 |
> |
if (.not.rf_initialized) then |
131 |
> |
write(default_error,*) 'Reaction field not initialized!' |
132 |
> |
return |
133 |
> |
endif |
134 |
|
|
135 |
< |
u1dotu2 = ulx(atom1)*ulx(atom2) + uly(atom1)*uly(atom2) + & |
136 |
< |
ulz(atom1)*ulz(atom2) |
122 |
< |
|
123 |
< |
dudx = - prerf*mu(atom1)*mu(atom2)*u1dotu2*dtdr*dx/rij |
124 |
< |
dudy = - prerf*mu(atom1)*mu(atom2)*u1dotu2*dtdr*dy/rij |
125 |
< |
dudz = - prerf*mu(atom1)*mu(atom2)*u1dotu2*dtdr*dz/rij |
126 |
< |
|
127 |
< |
flx(atom1) = flx(atom1) + dudx |
128 |
< |
fly(atom1) = fly(atom1) + dudy |
129 |
< |
flz(atom1) = flz(atom1) + dudz |
135 |
> |
! compute torques on dipoles: |
136 |
> |
! pre converts from mu in units of debye to kcal/mol |
137 |
|
|
138 |
< |
flx(atom2) = flx(atom2) - dudx |
139 |
< |
fly(atom2) = fly(atom2) - dudy |
140 |
< |
flz(atom2) = flz(atom2) - dudz |
138 |
> |
! The torque contribution is dipole cross reaction_field |
139 |
> |
|
140 |
> |
t(1,a1) = t(1,a1) + pre*mu1*(u_l(2,a1)*rf(3,a1) - u_l(3,a1)*rf(2,a1)) |
141 |
> |
t(2,a1) = t(2,a1) + pre*mu1*(u_l(3,a1)*rf(1,a1) - u_l(1,a1)*rf(3,a1)) |
142 |
> |
t(3,a1) = t(3,a1) + pre*mu1*(u_l(1,a1)*rf(2,a1) - u_l(2,a1)*rf(1,a1)) |
143 |
> |
|
144 |
> |
! the potential contribution is -1/2 dipole dot reaction_field |
145 |
> |
|
146 |
> |
if (do_pot) then |
147 |
> |
rfpot = rfpot - 0.5d0 * pre * mu1 * & |
148 |
> |
(rf(1,a1)*u_l(1,a1) + rf(2,a1)*u_l(2,a1) + rf(3,a1)*u_l(3,a1)) |
149 |
> |
endif |
150 |
> |
|
151 |
> |
return |
152 |
> |
end subroutine reaction_field_final |
153 |
> |
|
154 |
> |
subroutine rf_correct_forces(atom1, atom2, d, rij, u_l, f, do_stress) |
155 |
> |
|
156 |
> |
integer, intent(in) :: atom1, atom2 |
157 |
> |
real(kind=dp), dimension(3), intent(in) :: d |
158 |
> |
real(kind=dp), intent(in) :: rij |
159 |
> |
real( kind = dp ), dimension(:,:) :: u_l |
160 |
> |
real( kind = dp ), dimension(:,:) :: f |
161 |
> |
logical, intent(in) :: do_stress |
162 |
> |
|
163 |
> |
real (kind = dp), dimension(3) :: ul1 |
164 |
> |
real (kind = dp), dimension(3) :: ul2 |
165 |
> |
real (kind = dp) :: dtdr |
166 |
> |
real (kind = dp) :: dudx, dudy, dudz, u1dotu2 |
167 |
> |
integer :: me1, me2 |
168 |
> |
real (kind = dp) :: mu1, mu2 |
169 |
> |
|
170 |
> |
if (.not.rf_initialized) then |
171 |
> |
write(default_error,*) 'Reaction field not initialized!' |
172 |
> |
return |
173 |
> |
endif |
174 |
|
|
175 |
< |
! add contribution to the virial as well |
176 |
< |
virial = virial + ( dx*dudx + dy*dudy + dz*dudz ) |
177 |
< |
|
178 |
< |
endif |
179 |
< |
|
180 |
< |
return |
181 |
< |
end subroutine rf_correct_forces |
175 |
> |
if (rij.le.rrf) then |
176 |
> |
|
177 |
> |
if (rij.lt.rt) then |
178 |
> |
dtdr = 0.0d0 |
179 |
> |
else |
180 |
> |
dtdr = 6.0d0*(rij*rij - rij*rt - rij*rrf +rrf*rt)/((rrf-rt)**3) |
181 |
> |
endif |
182 |
> |
|
183 |
> |
#ifdef IS_MPI |
184 |
> |
me1 = atid_Row(atom1) |
185 |
> |
ul1(1) = u_l_Row(1,atom1) |
186 |
> |
ul1(2) = u_l_Row(2,atom1) |
187 |
> |
ul1(3) = u_l_Row(3,atom1) |
188 |
> |
|
189 |
> |
me2 = atid_Col(atom2) |
190 |
> |
ul2(1) = u_l_Col(1,atom2) |
191 |
> |
ul2(2) = u_l_Col(2,atom2) |
192 |
> |
ul2(3) = u_l_Col(3,atom2) |
193 |
> |
#else |
194 |
> |
me1 = atid(atom1) |
195 |
> |
ul1(1) = u_l(1,atom1) |
196 |
> |
ul1(2) = u_l(2,atom1) |
197 |
> |
ul1(3) = u_l(3,atom1) |
198 |
> |
|
199 |
> |
me2 = atid(atom2) |
200 |
> |
ul2(1) = u_l(1,atom2) |
201 |
> |
ul2(2) = u_l(2,atom2) |
202 |
> |
ul2(3) = u_l(3,atom2) |
203 |
> |
#endif |
204 |
> |
|
205 |
> |
call getElementProperty(atypes, me1, "dipole_moment", mu1) |
206 |
> |
call getElementProperty(atypes, me2, "dipole_moment", mu2) |
207 |
> |
|
208 |
> |
u1dotu2 = ul1(1)*ul2(1) + ul1(2)*ul2(2) + ul1(3)*ul2(3) |
209 |
> |
|
210 |
> |
dudx = - pre*mu1*mu2*u1dotu2*dtdr*d(1)/rij |
211 |
> |
dudy = - pre*mu1*mu2*u1dotu2*dtdr*d(2)/rij |
212 |
> |
dudz = - pre*mu1*mu2*u1dotu2*dtdr*d(3)/rij |
213 |
> |
|
214 |
> |
#ifdef IS_MPI |
215 |
> |
f_Row(1,atom1) = f_Row(1,atom1) + dudx |
216 |
> |
f_Row(2,atom1) = f_Row(2,atom1) + dudy |
217 |
> |
f_Row(3,atom1) = f_Row(3,atom1) + dudz |
218 |
> |
|
219 |
> |
f_Col(1,atom2) = f_Col(1,atom2) - dudx |
220 |
> |
f_Col(2,atom2) = f_Col(2,atom2) - dudy |
221 |
> |
f_Col(3,atom2) = f_Col(3,atom2) - dudz |
222 |
> |
#else |
223 |
> |
f(1,atom1) = f(1,atom1) + dudx |
224 |
> |
f(2,atom1) = f(2,atom1) + dudy |
225 |
> |
f(3,atom1) = f(3,atom1) + dudz |
226 |
> |
|
227 |
> |
f(1,atom2) = f(1,atom2) - dudx |
228 |
> |
f(2,atom2) = f(2,atom2) - dudy |
229 |
> |
f(3,atom2) = f(3,atom2) - dudz |
230 |
> |
#endif |
231 |
> |
|
232 |
> |
if (do_stress) then |
233 |
> |
tau_Temp(1) = tau_Temp(1) + dudx * d(1) |
234 |
> |
tau_Temp(2) = tau_Temp(2) + dudx * d(2) |
235 |
> |
tau_Temp(3) = tau_Temp(3) + dudx * d(3) |
236 |
> |
tau_Temp(4) = tau_Temp(4) + dudy * d(1) |
237 |
> |
tau_Temp(5) = tau_Temp(5) + dudy * d(2) |
238 |
> |
tau_Temp(6) = tau_Temp(6) + dudy * d(3) |
239 |
> |
tau_Temp(7) = tau_Temp(7) + dudz * d(1) |
240 |
> |
tau_Temp(8) = tau_Temp(8) + dudz * d(2) |
241 |
> |
tau_Temp(9) = tau_Temp(9) + dudz * d(3) |
242 |
> |
virial_Temp = virial_Temp + (tau_Temp(1) + tau_Temp(5) + tau_Temp(9)) |
243 |
> |
endif |
244 |
> |
endif |
245 |
> |
|
246 |
> |
return |
247 |
> |
end subroutine rf_correct_forces |
248 |
> |
end module reaction_field |