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Revision 4270 by jmichalk, Thu Jan 8 14:52:40 2015 UTC vs.
Revision 4271 by jmichalk, Mon Jan 12 19:24:14 2015 UTC

# Line 141 | Line 141 | for this model choice can be seen in our previous pape
141    \caption{Adsorption energies for a single CO at the atop site on M(111) at the atop site using the potentials
142      described in this work.  All values are in eV.}
143   \centering
144 < \begin{tabular}{| cc | cc |}
144 > \begin{tabular}{| cc | ccc |}
145    \hline
146 <  & Site & Calculated & Experimental \\
146 >  & Site & Calculated & Theory & Experimental \\
147    \hline
148 <  \textbf{Pt-CO} & atop & -1.47 &  \\
149 <  & bridge & -1.13 & \\
150 <  & hollow & -1.02 & \\
151 <  \textbf{Pd-CO} & atop & -1.54 & \\
152 <  & bridge & -1.65 &  \\
153 <  & hollow & -1.60 & \\
148 >  \textbf{Pt-CO} & atop & -1.47 & &  \\
149 >  & bridge & -1.13 & & \\
150 >  & hollow & -1.02 & & \\
151 >  \textbf{Pd-CO} & atop & -1.54 & & \\
152 >  & bridge & -1.65 &  & \\
153 >  & hollow & -1.60 & & \\
154    \hline
155   \end{tabular}
156   \label{tab:CO_energies}
# Line 426 | Line 426 | both sides of the system. The grids, Ising-like in nat
426   compositions of the various domains we observed. To perform this analysis, the
427   exposed surfaces were first simplified by projecting the 3-dimensional surface
428   onto a 2-dimensional grid, with two grids per system to capture the surfaces on
429 < both sides of the system. The grids, Ising-like in nature with only two values
430 < at each site, Pt or Pd, were then deconvoluted into separate domains based on
431 < nearest-neighbor connectivity (up, down, left, right, corners were not
432 < included). The resulting data was aggregated and normalized and is presented in
433 < Figures \ref{fig:domainAreasPt} and \ref{fig:domainAreasPd}.
429 > both sides of the system. The grids could only have one of two values at each
430 > site, Pt or Pd. The resulting Ising-like grids were then deconvoluted into
431 > separate domains based on nearest-neighbor connectivity (up, down, left, right;
432 > corners were not included). The resulting data was aggregated and normalized
433 > and is presented in Figures \ref{fig:domainAreasPt} and
434 > \ref{fig:domainAreasPd}. Representative examples of the grids can be seen in
435 > the supporting information.
436  
437 < The quantification of the surface composition that these figures display is helpful, but is more easily seen when the curves are integrated, which is shown in Table \ref{tab:integratedArea}. Especially interesting is constrating these figures with Figure \ref{fig:domainAreasNoCO}, which shows a small recovery of the Pt domain size upon removal of CO (is this true?) for the 25\% and 50\% systems. While our previous analyses focused on individual adatom moment, through diffusion and nearest neighbor calculations, an examination of the domain sizes
437 > The quantification of the surface composition that these figures display is
438 > helpful, but is more easily seen when the curves are integrated, which is shown
439 > in Table \ref{tab:integratedArea}. Especially interesting is contrasting these
440 > figures with Figure \ref{fig:domainAreasNoCO}, which shows a small recovery of
441 > the Pt domain size upon removal of CO (is this true?) for the 25\% and 50\%
442 > systems. This analysis allows us to focus on collective motion of the surface
443 > atoms as measured by the domain sizes, rather than individual adatom movement.
444 > At the beginning of the simulations, the surface layer of Pt makes up one
445 > domain of size $\sim$2625~\AA\textsuperscript{2}. This domain begins to shrink
446 > relatively quickly which involves the appearance of the underlying Pd and a
447 > growth in the Pd domains.  The presence of CO in the system appears to allow
448 > further clustering (i.e. shrinking) of the Pt domain which leads directly to a
449 > larger amount of exposed Pd of various domain sizes. For clarity purposes, the
450 > small growth in 1-2 atom Pt domains is not shown in Figure
451 > \ref{fig:domainAreasPt}, but can be seen in the supporting information.
452  
453  
454   \subsection{Equilibrium state}
# Line 444 | Line 460 | neighbor interactions, all with other Pt. This is of c
460   vertical displacement benefits both layers of Pt. The now underlying Pt has
461   approximately 9 nearest neighbors of Pt and 3 of Pd and is essentially in bulk.
462   The upper layer of Pt also benefits because it is now experiencing 9 nearest
463 < neighbor interactions, all with other Pt. This is of course the ideal case, but
464 < as seen in Figure \ref{fig:systems}.B, the 557 crystal facet is still present,
465 < just with Pt plateaus moved slightly forward and backward. However, without the
466 < presence of CO, very little vertical displacement is observed, which is what is
467 < hypothesized to facilite the multiple layer features observed in the higher
468 < coverage systems. The systems were run for approximately 80 nanoseconds and
469 < then stopped, primarily because, large scale changes had appeared to stop.
470 < Additionally, results from various analyses were converging (see
463 > neighbor interactions, all with other Pt. The ideal case would involve the
464 > majority of Pt maximizing their Pt-Pt interactions which could lead to massive
465 > disruption without any need for CO, but as seen in Figure \ref{fig:systems}.B,
466 > the 557 crystal facet is still present, just with Pt plateaus moved slightly
467 > forward and backward. Without the presence of CO, very little vertical
468 > displacement is observed, which is what is hypothesized to facilite the
469 > multiple layer features observed in the higher coverage systems. The systems
470 > were run for approximately 80 nanoseconds and then stopped, primarily because,
471 > large scale changes had appeared to stop.  Additionally, results from various
472 > analyses were converging (see
473   Figures~\ref{fig:domainAreasPd},~\ref{fig:domainAreasPt}, and
474   \ref{fig:nearestNeighbors}), suggesting that we were close to a equilibrium
475   state, at least for the time scales we were able to explore. Increased runtime
476   while possible, was not judged to be feasible at this time.
477  
460
478   \subsection{Role of CO: Presence and Absence}
479 + As shown in the previous sections, the presence of CO plays a large role in the
480 + restructuring of the Pt@Pd shell systems. The small amount of restructuring due
481 + to favorable Pt-Pt interactions is greatly enhanced when CO is added to the
482 + system. As concluded in our previous paper\cite{Michalka:2012}, CO helps enable
483 + vertical displacement of adatoms between layers, which is also seen here by
484 + examining the degree of clustering that occurred for various CO coverages. One
485 + final test we performed, already mentioned in Figure \ref{fig:domainAreasNoCO},
486 + is the removal of CO from the 25\% and 50\% systems. Figure
487 + \ref{fig:domainAreasNoCO} shows a slight increase in the Pt domain size, which
488 + would require the multi-layer Pt cluster to lose some of its stability and
489 + spread out. This is very similar to our previous work, where the removal of CO,
490 + led to the double-layer beginning to split back into individual steps. These
491 + systems were run for an additional 50 ns and despite the initial destablizing
492 + of the Pt clusters, appear to be stuck in a local thermodynamic minimum. It is
493 + possible that a slower removal of CO would remove the stability while still
494 + keeping enabling the vertical displacement that CO assists with and allow these
495 + systems to approach the equilibrium 0\% coverage system, but this would likely
496 + require a much longer run time outside the scope of this study.
497  
498  
499   \section{Conclusion}
# Line 470 | Line 505 | presence or absence.
505  
506   This work suggests that bimetallic and subsurface alloys could be tailored to
507   create and or expose active catalytic sites as a result of an adsorbates
508 < presence or absence.
508 > presence or absence.
509  
510  
511   \begin{acknowledgement}

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