[ViewVC] Annotation of: group/trunk/SHAPES/Makefile

#####################################################
# Makefile for SHAPES                               #
#####################################################
# You should not change anything here.              #
#####################################################

# No make rules by default
.SUFFIXES : .c .cpp .hpp .h $(O)

# Extension of object files
O=.o

# Extension of executables
EXE=

# Bourn shell
SHELL=/bin/sh

# Path prefix for installation links
PREFIX=/usr/local

# Location of the shapes home
SHAPES_HOME=/usr/local/shapes
VDW_PARAM_DIR=/usr/local/shapes/share/vdwFiles

# C compiler
CC=icc

# C++ compiler
CXX=icpc

# ar
AR=ar

# ranlib
RANLIB=ranlib

# rm
RM=rm -f

# soft link
LN_S=ln -s

# BSD install
INSTALL=@INSTALL@
INSTALL_PROGRAM=@INSTALL_PROGRAM@
INSTALL_DATA=@INSTALL_DATA@
MKINSTALLDIRS=@MKINSTALLDIRS@

# fftw library and include files
FFTWINC = -I/usr/local/include
FFTWLIB = -Wl,-R/usr/local/lib -L/usr/local/lib/ -lfftw3

# cgicc library and include files
CGICCINC = -I/usr/local/include
CGICCLIB = -Wl,-R/usr/local/lib -L/usr/local/lib/ -lcgicc

# CPP flags
CPPFLAGS=

# C flags
CFLAGS_C= -O3

# C++ flags
CXXFLAGS_C= -O3

# LDFLAGS
LDFLAGS=

# First do compile-time flags:

DECLARE=-DVDW_PATH="$(VDW_PARAM_DIR)"

# include paths starting with "." are all relative to the SUBDIRS!!!

INCLUDES= -I.. $(FFTWINC) 

CFLAGS=$(CFLAGS_C) $(INCLUDES) $(DECLARE) 
CXXFLAGS=$(CXXFLAGS_C) $(INCLUDES) $(DECLARE) 
DEPFLAGS=$(CFLAGS_C) $(INCLUDES) -I. 

SRC_DIR := ..

SHAPER=shaper$(EXE)
VISUALIZER=visualizer$(EXE)
LDADD=

# Then do the compile rules:

obj/%.o: %.cpp
        cd obj; $(CXX) $(CXXFLAGS) -c $(SRC_DIR)/$<

obj/%.o: %.c
        cd obj; $(CC) $(CFLAGS) -c $(SRC_DIR)/$<

# Then list what we have to compile
#
SHAPER_C_FILES = \
        $(DIR)/shaperCmd.c \
        $(DIR)/MatVec3.c \
        $(DIR)/cospmls.c \
        $(DIR)/makeweights.c \
        $(DIR)/naive_synthesis.c \
        $(DIR)/pmls.c \
        $(DIR)/primitive.c \
        $(DIR)/seminaive.c \
        $(DIR)/FST_semi_memo.c 

SHAPERCGI_C_FILES = \
        $(DIR)/MatVec3.c \
        $(DIR)/cospmls.c \
        $(DIR)/makeweights.c \
        $(DIR)/naive_synthesis.c \
        $(DIR)/pmls.c \
        $(DIR)/primitive.c \
        $(DIR)/seminaive.c \
        $(DIR)/FST_semi_memo.c 

VISUALIZER_C_FILES = \
        $(DIR)/visualizerCmd.c 

SHAPER_CXX_FILES = \
        $(DIR)/shaper.cpp \
        $(DIR)/PDBReader.cpp \
        $(DIR)/RigidBody.cpp \
        $(DIR)/VDWAtom.cpp \
        $(DIR)/GridBuilder.cpp \
        $(DIR)/SphereHarm.cpp 

SHAPERCGI_CXX_FILES = \
        $(DIR)/shaperCGI.cpp \
        $(DIR)/PDBReader.cpp \
        $(DIR)/RigidBody.cpp \
        $(DIR)/VDWAtom.cpp \
        $(DIR)/GridBuilder.cpp \
        $(DIR)/SphereHarm.cpp 

VISUALIZER_CXX_FILES = \
        $(DIR)/SHFunc.cpp \
        $(DIR)/SHAPE.cpp \
        $(DIR)/visualizer.cpp 

VDW_FILES= \
        amber99.vdw \
        charmm27.vdw \
        gaff.vdw \
        LJ.vdw \
        oplsaal.vdw 

DIR:=.
SHAPER_C_SRCS   :=     $(SHAPER_C_FILES)
SHAPER_CXX_SRCS :=      $(SHAPER_CXX_FILES)
SHAPER_SRCS     :=     $(SHAPER_C_SRCS) $(SHAPER_CXX_SRCS)
SHAPERCGI_C_SRCS   :=     $(SHAPERCGI_C_FILES)
SHAPERCGI_CXX_SRCS :=   $(SHAPERCGI_CXX_FILES)
SHAPERCGI_SRCS     :=     $(SHAPERCGI_C_SRCS) $(SHAPERCGI_CXX_SRCS)
VISUALIZER_C_SRCS   :=     $(VISUALIZER_C_FILES)
VISUALIZER_CXX_SRCS :=  $(VISUALIZER_CXX_FILES)
VISUALIZER_SRCS     :=     $(VISUALIZER_C_SRCS) $(VISUALIZER_CXX_SRCS)

DIR:=obj
SHAPER_C_OBJS   :=     $(SHAPER_C_FILES:.c=.o)
SHAPER_CXX_OBJS :=      $(SHAPER_CXX_FILES:.cpp=.o)
SHAPER_OBJS     :=     $(SHAPER_C_OBJS) $(SHAPER_CXX_OBJS)
SHAPERCGI_C_OBJS   :=     $(SHAPERCGI_C_FILES:.c=.o)
SHAPERCGI_CXX_OBJS :=   $(SHAPERCGI_CXX_FILES:.cpp=.o)
SHAPERCGI_OBJS     :=     $(SHAPERCGI_C_OBJS) $(SHAPERCGI_CXX_OBJS)
VISUALIZER_C_OBJS   :=     $(VISUALIZER_C_FILES:.c=.o)
VISUALIZER_CXX_OBJS :=  $(VISUALIZER_CXX_FILES:.cpp=.o)
VISUALIZER_OBJS     :=     $(VISUALIZER_C_OBJS) $(VISUALIZER_CXX_OBJS)

SUBDIRS = obj

# Possible make targets:

all: shaper visualizer shaperCGI

shaper$(EXE) : $(SHAPER_OBJS)
        $(CXX) $(CFLAGS) $(SHAPER_OBJS) -o $@ $(LDFLAGS) $(LDADD) $(FFTWLIB)
                                                                                                                                                            
shaperCGI$(EXE) : $(SHAPERCGI_OBJS)
        $(CXX) $(CFLAGS) $(SHAPERCGI_OBJS) -o $@ $(LDFLAGS) $(LDADD) $(FFTWLIB)  $(CGICCLIB)
                                                                                                                                                            
visualizer$(EXE) : $(VISUALIZER_OBJS)
        $(CXX) $(CFLAGS) $(VISUALIZER_OBJS) -o $@ $(LDFLAGS) $(LDADD)
                                                                                                                                                            
install : $(SHAPER) $(VISUALIZER) $(SHAPERCGI)
        $(MKINSTALLDIRS) $(SHAPES_HOME)/bin
        $(INSTALL_PROGRAM) -s $(SHAPER) $(SHAPES_HOME)/bin/$(SHAPER)
        $(INSTALL_PROGRAM) -s $(SHAPERCGI) $(SHAPES_HOME)/bin/$(SHAPERCGI)
        $(INSTALL_PROGRAM) -s $(VISUALIZER) $(SHAPES_HOME)/bin/$(VISUALIZER)
        $(MKINSTALLDIRS) $(VDW_PARAM_DIR)
        for i in $(VDW_FILES); do \
          echo "Installing $$i in $(VDW_PARAM_DIR)\n"; \
          $(INSTALL_DATA) $$i $(VDW_PARAM_DIR)/$$i; \
        done


.PHONY : clean

clean : dummy
        for i in $(SUBDIRS); do \
          (cd $$i; $(RM) *.o *.mod) || exit 1; \
        done
        $(RM) shaper visualizer *.o *.mod *~ Make.temp

distclean : dummy
        for i in $(SUBDIRS); do \
          (cd $$i; $(RM) *.o *.mod) || exit 1; \
        done
        $(RM) shaper visualizer *.o *.mod *~ Make.temp

depend : Make.dep

Make.dep :
        echo "Only C dependencies are made automagically!"
        echo "# DO NOT DELETE THIS LINE - used by make depend" > Make.dep
        $(CC) $(DEPFLAGS) -MM $(SHAPER_C_SRCS) $(VISUALIZER_C_SRCS) $(SHAPERCGI_C_SRCS) \
                | sed 's/\.o:/\$$(O)\ :/g' > Make.temp
        $(CXX) $(DEPFLAGS) -MM $(SHAPER_CXX_SRCS) $(VISUALIZER_CXX_SRCS) $(SHAPERCGI_CXX_SRCS) \
                | sed 's/\.o:/\$$(O)\ :/g' >> Make.temp
        cat Make.temp | sed 's/^[a-zA-Z0-9]/obj\/&/g' >> Make.dep
        $(RM) Make.temp

install : dummy

links : dummy

tests : dummy

dummy :

include Make.dep
Revision:	1360
Committed:	Tue Jul 20 20:02:15 2004 UTC (19 years, 11 months ago) by gezelter
File size:	5889 byte(s)
Log Message:	Changes for CGI and for gengetopts --unamed-opt="PDBFILE"
#	User	Rev	Content
1	gezelter	1240	#####################################################
2	gezelter	1271	# Makefile for SHAPES #
3	gezelter	1240	#####################################################
4			# You should not change anything here. #
5			#####################################################
6
7			# No make rules by default
8			.SUFFIXES : .c .cpp .hpp .h $(O)
9
10			# Extension of object files
11			O=.o
12
13			# Extension of executables
14			EXE=
15
16			# Bourn shell
17			SHELL=/bin/sh
18
19			# Path prefix for installation links
20			PREFIX=/usr/local
21
22	chrisfen	1287	# Location of the shapes home
23	gezelter	1271	SHAPES_HOME=/usr/local/shapes
24			VDW_PARAM_DIR=/usr/local/shapes/share/vdwFiles
25	gezelter	1240
26			# C compiler
27	gezelter	1295	CC=icc
28	gezelter	1240
29			# C++ compiler
30	gezelter	1295	CXX=icpc
31	gezelter	1240
32			# ar
33			AR=ar
34
35			# ranlib
36			RANLIB=ranlib
37
38			# rm
39			RM=rm -f
40
41			# soft link
42			LN_S=ln -s
43
44			# BSD install
45	gezelter	1271	INSTALL=@INSTALL@
46			INSTALL_PROGRAM=@INSTALL_PROGRAM@
47			INSTALL_DATA=@INSTALL_DATA@
48			MKINSTALLDIRS=@MKINSTALLDIRS@
49	gezelter	1240
50	chrisfen	1287	# fftw library and include files
51			FFTWINC = -I/usr/local/include
52	gezelter	1360	FFTWLIB = -Wl,-R/usr/local/lib -L/usr/local/lib/ -lfftw3
53	chrisfen	1287
54	gezelter	1360	# cgicc library and include files
55			CGICCINC = -I/usr/local/include
56			CGICCLIB = -Wl,-R/usr/local/lib -L/usr/local/lib/ -lcgicc
57
58	gezelter	1240	# CPP flags
59			CPPFLAGS=
60
61			# C flags
62	gezelter	1300	CFLAGS_C= -O3
63	gezelter	1240
64			# C++ flags
65	chrisfen	1287	CXXFLAGS_C= -O3
66	gezelter	1240
67			# LDFLAGS
68	gezelter	1271	LDFLAGS=
69	gezelter	1240
70			# First do compile-time flags:
71
72	gezelter	1271	DECLARE=-DVDW_PATH="$(VDW_PARAM_DIR)"
73	gezelter	1240
74			# include paths starting with "." are all relative to the SUBDIRS!!!
75
76	chrisfen	1287	INCLUDES= -I.. $(FFTWINC)
77	gezelter	1240
78	chrisfen	1287	CFLAGS=$(CFLAGS_C) $(INCLUDES) $(DECLARE)
79			CXXFLAGS=$(CXXFLAGS_C) $(INCLUDES) $(DECLARE)
80	gezelter	1295	DEPFLAGS=$(CFLAGS_C) $(INCLUDES) -I.
81	gezelter	1240
82			SRC_DIR := ..
83
84	gezelter	1295	SHAPER=shaper$(EXE)
85			VISUALIZER=visualizer$(EXE)
86	gezelter	1360	LDADD=
87	gezelter	1240
88			# Then do the compile rules:
89
90			obj/%.o: %.cpp
91			cd obj; $(CXX) $(CXXFLAGS) -c $(SRC_DIR)/$<
92
93			obj/%.o: %.c
94			cd obj; $(CC) $(CFLAGS) -c $(SRC_DIR)/$<
95
96			# Then list what we have to compile
97			#
98	gezelter	1295	SHAPER_C_FILES = \
99			$(DIR)/shaperCmd.c \
100	chrisfen	1287	$(DIR)/MatVec3.c \
101			$(DIR)/cospmls.c \
102			$(DIR)/makeweights.c \
103			$(DIR)/naive_synthesis.c \
104			$(DIR)/pmls.c \
105			$(DIR)/primitive.c \
106			$(DIR)/seminaive.c \
107			$(DIR)/FST_semi_memo.c
108	gezelter	1240
109	gezelter	1360	SHAPERCGI_C_FILES = \
110			$(DIR)/MatVec3.c \
111			$(DIR)/cospmls.c \
112			$(DIR)/makeweights.c \
113			$(DIR)/naive_synthesis.c \
114			$(DIR)/pmls.c \
115			$(DIR)/primitive.c \
116			$(DIR)/seminaive.c \
117			$(DIR)/FST_semi_memo.c
118
119	gezelter	1295	VISUALIZER_C_FILES = \
120			$(DIR)/visualizerCmd.c
121
122			SHAPER_CXX_FILES = \
123			$(DIR)/shaper.cpp \
124	gezelter	1240	$(DIR)/PDBReader.cpp \
125	gezelter	1271	$(DIR)/RigidBody.cpp \
126	chrisfen	1276	$(DIR)/VDWAtom.cpp \
127	chrisfen	1287	$(DIR)/GridBuilder.cpp \
128	gezelter	1295	$(DIR)/SphereHarm.cpp
129	gezelter	1240
130	gezelter	1360	SHAPERCGI_CXX_FILES = \
131			$(DIR)/shaperCGI.cpp \
132			$(DIR)/PDBReader.cpp \
133			$(DIR)/RigidBody.cpp \
134			$(DIR)/VDWAtom.cpp \
135			$(DIR)/GridBuilder.cpp \
136			$(DIR)/SphereHarm.cpp
137
138	gezelter	1295	VISUALIZER_CXX_FILES = \
139			$(DIR)/SHFunc.cpp \
140			$(DIR)/SHAPE.cpp \
141			$(DIR)/visualizer.cpp
142
143	gezelter	1271	VDW_FILES= \
144			amber99.vdw \
145			charmm27.vdw \
146			gaff.vdw \
147			LJ.vdw \
148			oplsaal.vdw
149
150	gezelter	1240	DIR:=.
151	gezelter	1295	SHAPER_C_SRCS := $(SHAPER_C_FILES)
152			SHAPER_CXX_SRCS := $(SHAPER_CXX_FILES)
153			SHAPER_SRCS := $(SHAPER_C_SRCS) $(SHAPER_CXX_SRCS)
154	gezelter	1360	SHAPERCGI_C_SRCS := $(SHAPERCGI_C_FILES)
155			SHAPERCGI_CXX_SRCS := $(SHAPERCGI_CXX_FILES)
156			SHAPERCGI_SRCS := $(SHAPERCGI_C_SRCS) $(SHAPERCGI_CXX_SRCS)
157	gezelter	1295	VISUALIZER_C_SRCS := $(VISUALIZER_C_FILES)
158			VISUALIZER_CXX_SRCS := $(VISUALIZER_CXX_FILES)
159			VISUALIZER_SRCS := $(VISUALIZER_C_SRCS) $(VISUALIZER_CXX_SRCS)
160	gezelter	1240
161			DIR:=obj
162	gezelter	1295	SHAPER_C_OBJS := $(SHAPER_C_FILES:.c=.o)
163			SHAPER_CXX_OBJS := $(SHAPER_CXX_FILES:.cpp=.o)
164			SHAPER_OBJS := $(SHAPER_C_OBJS) $(SHAPER_CXX_OBJS)
165	gezelter	1360	SHAPERCGI_C_OBJS := $(SHAPERCGI_C_FILES:.c=.o)
166			SHAPERCGI_CXX_OBJS := $(SHAPERCGI_CXX_FILES:.cpp=.o)
167			SHAPERCGI_OBJS := $(SHAPERCGI_C_OBJS) $(SHAPERCGI_CXX_OBJS)
168	gezelter	1295	VISUALIZER_C_OBJS := $(VISUALIZER_C_FILES:.c=.o)
169			VISUALIZER_CXX_OBJS := $(VISUALIZER_CXX_FILES:.cpp=.o)
170			VISUALIZER_OBJS := $(VISUALIZER_C_OBJS) $(VISUALIZER_CXX_OBJS)
171	gezelter	1240
172	gezelter	1271	SUBDIRS = obj
173	gezelter	1240
174			# Possible make targets:
175
176	gezelter	1360	all: shaper visualizer shaperCGI
177	gezelter	1240
178	gezelter	1295	shaper$(EXE) : $(SHAPER_OBJS)
179			$(CXX) $(CFLAGS) $(SHAPER_OBJS) -o $@ $(LDFLAGS) $(LDADD) $(FFTWLIB)
180	gezelter	1240
181	gezelter	1360	shaperCGI$(EXE) : $(SHAPERCGI_OBJS)
182			$(CXX) $(CFLAGS) $(SHAPERCGI_OBJS) -o $@ $(LDFLAGS) $(LDADD) $(FFTWLIB) $(CGICCLIB)
183
184	gezelter	1295	visualizer$(EXE) : $(VISUALIZER_OBJS)
185			$(CXX) $(CFLAGS) $(VISUALIZER_OBJS) -o $@ $(LDFLAGS) $(LDADD)
186
187	gezelter	1360	install : $(SHAPER) $(VISUALIZER) $(SHAPERCGI)
188	gezelter	1271	$(MKINSTALLDIRS) $(SHAPES_HOME)/bin
189	gezelter	1295	$(INSTALL_PROGRAM) -s $(SHAPER) $(SHAPES_HOME)/bin/$(SHAPER)
190	gezelter	1360	$(INSTALL_PROGRAM) -s $(SHAPERCGI) $(SHAPES_HOME)/bin/$(SHAPERCGI)
191	gezelter	1295	$(INSTALL_PROGRAM) -s $(VISUALIZER) $(SHAPES_HOME)/bin/$(VISUALIZER)
192	gezelter	1271	$(MKINSTALLDIRS) $(VDW_PARAM_DIR)
193			for i in $(VDW_FILES); do \
194			echo "Installing $$i in $(VDW_PARAM_DIR)\n"; \
195			$(INSTALL_DATA) $$i $(VDW_PARAM_DIR)/$$i; \
196			done
197	gezelter	1240
198
199			.PHONY : clean
200
201			clean : dummy
202	gezelter	1273	for i in $(SUBDIRS); do \
203	gezelter	1240	(cd $$i; $(RM) .o .mod) \|\| exit 1; \
204			done
205	gezelter	1295	$(RM) shaper visualizer .o .mod *~ Make.temp
206	gezelter	1240
207			distclean : dummy
208	gezelter	1273	for i in $(SUBDIRS); do \
209	gezelter	1240	(cd $$i; $(RM) .o .mod) \|\| exit 1; \
210			done
211	gezelter	1295	$(RM) shaper visualizer .o .mod *~ Make.temp
212	gezelter	1240
213			depend : Make.dep
214
215			Make.dep :
216			echo "Only C dependencies are made automagically!"
217			echo "# DO NOT DELETE THIS LINE - used by make depend" > Make.dep
218	gezelter	1360	$(CC) $(DEPFLAGS) -MM $(SHAPER_C_SRCS) $(VISUALIZER_C_SRCS) $(SHAPERCGI_C_SRCS) \
219	gezelter	1240	\| sed 's/\.o:/\$$(O)\ :/g' > Make.temp
220	gezelter	1360	$(CXX) $(DEPFLAGS) -MM $(SHAPER_CXX_SRCS) $(VISUALIZER_CXX_SRCS) $(SHAPERCGI_CXX_SRCS) \
221	gezelter	1240	\| sed 's/\.o:/\$$(O)\ :/g' >> Make.temp
222			cat Make.temp \| sed 's/^[a-zA-Z0-9]/obj\/&/g' >> Make.dep
223	gezelter	1273	$(RM) Make.temp
224	gezelter	1240
225			install : dummy
226
227			links : dummy
228
229			tests : dummy
230
231			dummy :
232
233			include Make.dep