| 1 |
##################################################### |
| 2 |
# Makefile for SHAPES # |
| 3 |
##################################################### |
| 4 |
# You should not change anything here. # |
| 5 |
##################################################### |
| 6 |
|
| 7 |
# No make rules by default |
| 8 |
.SUFFIXES : .c .cpp .hpp .h $(O) |
| 9 |
|
| 10 |
# Extension of object files |
| 11 |
O=.o |
| 12 |
|
| 13 |
# Extension of executables |
| 14 |
EXE= |
| 15 |
|
| 16 |
# Bourn shell |
| 17 |
SHELL=/bin/sh |
| 18 |
|
| 19 |
# Path prefix for installation links |
| 20 |
PREFIX=/usr/local |
| 21 |
|
| 22 |
# Location of the shapes home |
| 23 |
SHAPES_HOME=/usr/local/shapes |
| 24 |
VDW_PARAM_DIR=/usr/local/shapes/share/vdwFiles |
| 25 |
|
| 26 |
# C compiler |
| 27 |
CC=icc |
| 28 |
|
| 29 |
# C++ compiler |
| 30 |
CXX=icpc |
| 31 |
|
| 32 |
# ar |
| 33 |
AR=ar |
| 34 |
|
| 35 |
# ranlib |
| 36 |
RANLIB=ranlib |
| 37 |
|
| 38 |
# rm |
| 39 |
RM=rm -f |
| 40 |
|
| 41 |
# soft link |
| 42 |
LN_S=ln -s |
| 43 |
|
| 44 |
# BSD install |
| 45 |
INSTALL=@INSTALL@ |
| 46 |
INSTALL_PROGRAM=@INSTALL_PROGRAM@ |
| 47 |
INSTALL_DATA=@INSTALL_DATA@ |
| 48 |
MKINSTALLDIRS=@MKINSTALLDIRS@ |
| 49 |
|
| 50 |
# fftw library and include files |
| 51 |
FFTWINC = -I/usr/local/include |
| 52 |
FFTWLIB = -L/usr/local/lib/ -lfftw3 |
| 53 |
|
| 54 |
# CPP flags |
| 55 |
CPPFLAGS= |
| 56 |
|
| 57 |
# C flags |
| 58 |
CFLAGS_C= -O3 |
| 59 |
|
| 60 |
# C++ flags |
| 61 |
CXXFLAGS_C= -O3 |
| 62 |
|
| 63 |
# LDFLAGS |
| 64 |
LDFLAGS= |
| 65 |
|
| 66 |
# First do compile-time flags: |
| 67 |
|
| 68 |
DECLARE=-DVDW_PATH="$(VDW_PARAM_DIR)" |
| 69 |
|
| 70 |
# include paths starting with "." are all relative to the SUBDIRS!!! |
| 71 |
|
| 72 |
INCLUDES= -I.. $(FFTWINC) |
| 73 |
|
| 74 |
CFLAGS=$(CFLAGS_C) $(INCLUDES) $(DECLARE) |
| 75 |
CXXFLAGS=$(CXXFLAGS_C) $(INCLUDES) $(DECLARE) |
| 76 |
DEPFLAGS=$(CFLAGS_C) $(INCLUDES) -I. |
| 77 |
|
| 78 |
SRC_DIR := .. |
| 79 |
|
| 80 |
SHAPER=shaper$(EXE) |
| 81 |
VISUALIZER=visualizer$(EXE) |
| 82 |
LDADD=-lz |
| 83 |
|
| 84 |
# Then do the compile rules: |
| 85 |
|
| 86 |
obj/%.o: %.cpp |
| 87 |
cd obj; $(CXX) $(CXXFLAGS) -c $(SRC_DIR)/$< |
| 88 |
|
| 89 |
obj/%.o: %.c |
| 90 |
cd obj; $(CC) $(CFLAGS) -c $(SRC_DIR)/$< |
| 91 |
|
| 92 |
# Then list what we have to compile |
| 93 |
# |
| 94 |
SHAPER_C_FILES = \ |
| 95 |
$(DIR)/shaperCmd.c \ |
| 96 |
$(DIR)/MatVec3.c \ |
| 97 |
$(DIR)/cospmls.c \ |
| 98 |
$(DIR)/makeweights.c \ |
| 99 |
$(DIR)/naive_synthesis.c \ |
| 100 |
$(DIR)/pmls.c \ |
| 101 |
$(DIR)/primitive.c \ |
| 102 |
$(DIR)/seminaive.c \ |
| 103 |
$(DIR)/FST_semi_memo.c |
| 104 |
|
| 105 |
VISUALIZER_C_FILES = \ |
| 106 |
$(DIR)/visualizerCmd.c |
| 107 |
|
| 108 |
SHAPER_CXX_FILES = \ |
| 109 |
$(DIR)/shaper.cpp \ |
| 110 |
$(DIR)/PDBReader.cpp \ |
| 111 |
$(DIR)/RigidBody.cpp \ |
| 112 |
$(DIR)/VDWAtom.cpp \ |
| 113 |
$(DIR)/GridBuilder.cpp \ |
| 114 |
$(DIR)/SphereHarm.cpp |
| 115 |
|
| 116 |
VISUALIZER_CXX_FILES = \ |
| 117 |
$(DIR)/SHFunc.cpp \ |
| 118 |
$(DIR)/SHAPE.cpp \ |
| 119 |
$(DIR)/visualizer.cpp |
| 120 |
|
| 121 |
VDW_FILES= \ |
| 122 |
amber99.vdw \ |
| 123 |
charmm27.vdw \ |
| 124 |
gaff.vdw \ |
| 125 |
LJ.vdw \ |
| 126 |
oplsaal.vdw |
| 127 |
|
| 128 |
DIR:=. |
| 129 |
SHAPER_C_SRCS := $(SHAPER_C_FILES) |
| 130 |
SHAPER_CXX_SRCS := $(SHAPER_CXX_FILES) |
| 131 |
SHAPER_SRCS := $(SHAPER_C_SRCS) $(SHAPER_CXX_SRCS) |
| 132 |
VISUALIZER_C_SRCS := $(VISUALIZER_C_FILES) |
| 133 |
VISUALIZER_CXX_SRCS := $(VISUALIZER_CXX_FILES) |
| 134 |
VISUALIZER_SRCS := $(VISUALIZER_C_SRCS) $(VISUALIZER_CXX_SRCS) |
| 135 |
|
| 136 |
DIR:=obj |
| 137 |
SHAPER_C_OBJS := $(SHAPER_C_FILES:.c=.o) |
| 138 |
SHAPER_CXX_OBJS := $(SHAPER_CXX_FILES:.cpp=.o) |
| 139 |
SHAPER_OBJS := $(SHAPER_C_OBJS) $(SHAPER_CXX_OBJS) |
| 140 |
VISUALIZER_C_OBJS := $(VISUALIZER_C_FILES:.c=.o) |
| 141 |
VISUALIZER_CXX_OBJS := $(VISUALIZER_CXX_FILES:.cpp=.o) |
| 142 |
VISUALIZER_OBJS := $(VISUALIZER_C_OBJS) $(VISUALIZER_CXX_OBJS) |
| 143 |
|
| 144 |
SUBDIRS = obj |
| 145 |
|
| 146 |
# Possible make targets: |
| 147 |
|
| 148 |
all: shaper visualizer |
| 149 |
|
| 150 |
shaper$(EXE) : $(SHAPER_OBJS) |
| 151 |
$(CXX) $(CFLAGS) $(SHAPER_OBJS) -o $@ $(LDFLAGS) $(LDADD) $(FFTWLIB) |
| 152 |
|
| 153 |
visualizer$(EXE) : $(VISUALIZER_OBJS) |
| 154 |
$(CXX) $(CFLAGS) $(VISUALIZER_OBJS) -o $@ $(LDFLAGS) $(LDADD) |
| 155 |
|
| 156 |
install : $(SHAPER) $(VISUALIZER) |
| 157 |
$(MKINSTALLDIRS) $(SHAPES_HOME)/bin |
| 158 |
$(INSTALL_PROGRAM) -s $(SHAPER) $(SHAPES_HOME)/bin/$(SHAPER) |
| 159 |
$(INSTALL_PROGRAM) -s $(VISUALIZER) $(SHAPES_HOME)/bin/$(VISUALIZER) |
| 160 |
$(MKINSTALLDIRS) $(VDW_PARAM_DIR) |
| 161 |
for i in $(VDW_FILES); do \ |
| 162 |
echo "Installing $$i in $(VDW_PARAM_DIR)\n"; \ |
| 163 |
$(INSTALL_DATA) $$i $(VDW_PARAM_DIR)/$$i; \ |
| 164 |
done |
| 165 |
|
| 166 |
|
| 167 |
.PHONY : clean |
| 168 |
|
| 169 |
clean : dummy |
| 170 |
for i in $(SUBDIRS); do \ |
| 171 |
(cd $$i; $(RM) *.o *.mod) || exit 1; \ |
| 172 |
done |
| 173 |
$(RM) shaper visualizer *.o *.mod *~ Make.temp |
| 174 |
|
| 175 |
distclean : dummy |
| 176 |
for i in $(SUBDIRS); do \ |
| 177 |
(cd $$i; $(RM) *.o *.mod) || exit 1; \ |
| 178 |
done |
| 179 |
$(RM) shaper visualizer *.o *.mod *~ Make.temp |
| 180 |
|
| 181 |
depend : Make.dep |
| 182 |
|
| 183 |
Make.dep : |
| 184 |
echo "Only C dependencies are made automagically!" |
| 185 |
echo "# DO NOT DELETE THIS LINE - used by make depend" > Make.dep |
| 186 |
$(CC) $(DEPFLAGS) -MM $(SHAPER_C_SRCS) $(VISUALIZER_C_SRCS) \ |
| 187 |
| sed 's/\.o:/\$$(O)\ :/g' > Make.temp |
| 188 |
$(CXX) $(DEPFLAGS) -MM $(SHAPER_CXX_SRCS) $(VISUALIZER_CXX_SRCS) \ |
| 189 |
| sed 's/\.o:/\$$(O)\ :/g' >> Make.temp |
| 190 |
cat Make.temp | sed 's/^[a-zA-Z0-9]/obj\/&/g' >> Make.dep |
| 191 |
$(RM) Make.temp |
| 192 |
|
| 193 |
install : dummy |
| 194 |
|
| 195 |
links : dummy |
| 196 |
|
| 197 |
tests : dummy |
| 198 |
|
| 199 |
dummy : |
| 200 |
|
| 201 |
include Make.dep |
