19 |
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# Path prefix for installation links |
20 |
|
PREFIX=/usr/local |
21 |
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|
22 |
< |
# Location of the oopse home |
22 |
> |
# Location of the shapes home |
23 |
|
SHAPES_HOME=/usr/local/shapes |
24 |
|
VDW_PARAM_DIR=/usr/local/shapes/share/vdwFiles |
25 |
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|
26 |
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# C compiler |
27 |
< |
CC=icc8 |
27 |
> |
CC=icc |
28 |
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|
29 |
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# C++ compiler |
30 |
< |
CXX=icpc8 |
30 |
> |
CXX=icpc |
31 |
|
|
32 |
|
# ar |
33 |
|
AR=ar |
47 |
|
INSTALL_DATA=@INSTALL_DATA@ |
48 |
|
MKINSTALLDIRS=@MKINSTALLDIRS@ |
49 |
|
|
50 |
+ |
# fftw library and include files |
51 |
+ |
FFTWINC = -I/usr/local/include |
52 |
+ |
FFTWLIB = -L/usr/local/lib/ -lfftw3 |
53 |
+ |
|
54 |
|
# CPP flags |
55 |
|
CPPFLAGS= |
56 |
|
|
57 |
|
# C flags |
58 |
< |
CFLAGS_C= |
58 |
> |
CFLAGS_C= -O3 |
59 |
|
|
60 |
|
# C++ flags |
61 |
< |
CXXFLAGS_C= |
61 |
> |
CXXFLAGS_C= -O3 |
62 |
|
|
63 |
|
# LDFLAGS |
64 |
|
LDFLAGS= |
69 |
|
|
70 |
|
# include paths starting with "." are all relative to the SUBDIRS!!! |
71 |
|
|
72 |
< |
INCLUDES= -I.. |
72 |
> |
INCLUDES= -I.. $(FFTWINC) |
73 |
|
|
74 |
< |
CFLAGS=$(CFLAGS_C) $(INCLUDES) $(DECLARE) |
75 |
< |
CXXFLAGS=$(CXXFLAGS_C) $(INCLUDES) $(DECLARE) |
76 |
< |
DEPFLAGS=$(CFLAGS_C) -I. |
74 |
> |
CFLAGS=$(CFLAGS_C) $(INCLUDES) $(DECLARE) |
75 |
> |
CXXFLAGS=$(CXXFLAGS_C) $(INCLUDES) $(DECLARE) |
76 |
> |
DEPFLAGS=$(CFLAGS_C) $(INCLUDES) -I. |
77 |
|
|
78 |
|
SRC_DIR := .. |
79 |
|
|
80 |
< |
FORCER=forcer$(EXE) |
80 |
> |
SHAPER=shaper$(EXE) |
81 |
> |
VISUALIZER=visualizer$(EXE) |
82 |
|
LDADD=-lz |
83 |
|
|
84 |
|
# Then do the compile rules: |
91 |
|
|
92 |
|
# Then list what we have to compile |
93 |
|
# |
94 |
< |
C_FILES = \ |
95 |
< |
$(DIR)/forcerCmd.c \ |
96 |
< |
$(DIR)/MatVec3.c |
94 |
> |
SHAPER_C_FILES = \ |
95 |
> |
$(DIR)/shaperCmd.c \ |
96 |
> |
$(DIR)/MatVec3.c \ |
97 |
> |
$(DIR)/cospmls.c \ |
98 |
> |
$(DIR)/makeweights.c \ |
99 |
> |
$(DIR)/naive_synthesis.c \ |
100 |
> |
$(DIR)/pmls.c \ |
101 |
> |
$(DIR)/primitive.c \ |
102 |
> |
$(DIR)/seminaive.c \ |
103 |
> |
$(DIR)/FST_semi_memo.c |
104 |
|
|
105 |
< |
CXX_FILES = \ |
106 |
< |
$(DIR)/forcer.cpp \ |
105 |
> |
VISUALIZER_C_FILES = \ |
106 |
> |
$(DIR)/visualizerCmd.c |
107 |
> |
|
108 |
> |
SHAPER_CXX_FILES = \ |
109 |
> |
$(DIR)/shaper.cpp \ |
110 |
|
$(DIR)/PDBReader.cpp \ |
111 |
|
$(DIR)/RigidBody.cpp \ |
112 |
< |
$(DIR)/VDWAtom.cpp |
112 |
> |
$(DIR)/VDWAtom.cpp \ |
113 |
> |
$(DIR)/GridBuilder.cpp \ |
114 |
> |
$(DIR)/SphereHarm.cpp |
115 |
|
|
116 |
+ |
VISUALIZER_CXX_FILES = \ |
117 |
+ |
$(DIR)/SHFunc.cpp \ |
118 |
+ |
$(DIR)/SHAPE.cpp \ |
119 |
+ |
$(DIR)/visualizer.cpp |
120 |
+ |
|
121 |
|
VDW_FILES= \ |
122 |
|
amber99.vdw \ |
123 |
|
charmm27.vdw \ |
126 |
|
oplsaal.vdw |
127 |
|
|
128 |
|
DIR:=. |
129 |
< |
C_SRCS := $(C_FILES) |
130 |
< |
CXX_SRCS := $(CXX_FILES) |
131 |
< |
SRCS := $(C_SRCS) $(CXX_SRCS) |
129 |
> |
SHAPER_C_SRCS := $(SHAPER_C_FILES) |
130 |
> |
SHAPER_CXX_SRCS := $(SHAPER_CXX_FILES) |
131 |
> |
SHAPER_SRCS := $(SHAPER_C_SRCS) $(SHAPER_CXX_SRCS) |
132 |
> |
VISUALIZER_C_SRCS := $(VISUALIZER_C_FILES) |
133 |
> |
VISUALIZER_CXX_SRCS := $(VISUALIZER_CXX_FILES) |
134 |
> |
VISUALIZER_SRCS := $(VISUALIZER_C_SRCS) $(VISUALIZER_CXX_SRCS) |
135 |
|
|
136 |
|
DIR:=obj |
137 |
< |
C_OBJS := $(C_FILES:.c=.o) |
138 |
< |
CXX_OBJS := $(CXX_FILES:.cpp=.o) |
139 |
< |
OBJS := $(C_OBJS) $(CXX_OBJS) |
137 |
> |
SHAPER_C_OBJS := $(SHAPER_C_FILES:.c=.o) |
138 |
> |
SHAPER_CXX_OBJS := $(SHAPER_CXX_FILES:.cpp=.o) |
139 |
> |
SHAPER_OBJS := $(SHAPER_C_OBJS) $(SHAPER_CXX_OBJS) |
140 |
> |
VISUALIZER_C_OBJS := $(VISUALIZER_C_FILES:.c=.o) |
141 |
> |
VISUALIZER_CXX_OBJS := $(VISUALIZER_CXX_FILES:.cpp=.o) |
142 |
> |
VISUALIZER_OBJS := $(VISUALIZER_C_OBJS) $(VISUALIZER_CXX_OBJS) |
143 |
|
|
144 |
|
SUBDIRS = obj |
145 |
|
|
146 |
|
# Possible make targets: |
147 |
|
|
148 |
< |
all: forcer |
148 |
> |
all: shaper visualizer |
149 |
|
|
150 |
< |
forcer$(EXE) : $(OBJS) |
151 |
< |
$(CXX) $(CFLAGS) $(OBJS) -o $@ $(LDFLAGS) $(LDADD) |
150 |
> |
shaper$(EXE) : $(SHAPER_OBJS) |
151 |
> |
$(CXX) $(CFLAGS) $(SHAPER_OBJS) -o $@ $(LDFLAGS) $(LDADD) $(FFTWLIB) |
152 |
|
|
153 |
< |
install : $(FORCER) |
153 |
> |
visualizer$(EXE) : $(VISUALIZER_OBJS) |
154 |
> |
$(CXX) $(CFLAGS) $(VISUALIZER_OBJS) -o $@ $(LDFLAGS) $(LDADD) |
155 |
> |
|
156 |
> |
install : $(SHAPER) $(VISUALIZER) |
157 |
|
$(MKINSTALLDIRS) $(SHAPES_HOME)/bin |
158 |
< |
$(INSTALL_PROGRAM) -s $(FORCER) $(SHAPES_HOME)/bin/$(FORCER) |
158 |
> |
$(INSTALL_PROGRAM) -s $(SHAPER) $(SHAPES_HOME)/bin/$(SHAPER) |
159 |
> |
$(INSTALL_PROGRAM) -s $(VISUALIZER) $(SHAPES_HOME)/bin/$(VISUALIZER) |
160 |
|
$(MKINSTALLDIRS) $(VDW_PARAM_DIR) |
161 |
|
for i in $(VDW_FILES); do \ |
162 |
|
echo "Installing $$i in $(VDW_PARAM_DIR)\n"; \ |
170 |
|
for i in $(SUBDIRS); do \ |
171 |
|
(cd $$i; $(RM) *.o *.mod) || exit 1; \ |
172 |
|
done |
173 |
< |
$(RM) forcer *.o *.mod *~ Make.temp |
173 |
> |
$(RM) shaper visualizer *.o *.mod *~ Make.temp |
174 |
|
|
175 |
|
distclean : dummy |
176 |
|
for i in $(SUBDIRS); do \ |
177 |
|
(cd $$i; $(RM) *.o *.mod) || exit 1; \ |
178 |
|
done |
179 |
< |
$(RM) forcer *.o *.mod *~ Make.temp |
179 |
> |
$(RM) shaper visualizer *.o *.mod *~ Make.temp |
180 |
|
|
181 |
|
depend : Make.dep |
182 |
|
|
183 |
|
Make.dep : |
184 |
|
echo "Only C dependencies are made automagically!" |
185 |
|
echo "# DO NOT DELETE THIS LINE - used by make depend" > Make.dep |
186 |
< |
$(CC) $(DEPFLAGS) -MM $(C_SRCS) \ |
186 |
> |
$(CC) $(DEPFLAGS) -MM $(SHAPER_C_SRCS) $(VISUALIZER_C_SRCS) \ |
187 |
|
| sed 's/\.o:/\$$(O)\ :/g' > Make.temp |
188 |
< |
$(CXX) $(DEPFLAGS) -MM $(CXX_SRCS) \ |
188 |
> |
$(CXX) $(DEPFLAGS) -MM $(SHAPER_CXX_SRCS) $(VISUALIZER_CXX_SRCS) \ |
189 |
|
| sed 's/\.o:/\$$(O)\ :/g' >> Make.temp |
190 |
|
cat Make.temp | sed 's/^[a-zA-Z0-9]/obj\/&/g' >> Make.dep |
191 |
|
$(RM) Make.temp |