--- trunk/SHAPES/shaper.cpp	2004/07/20 17:07:01	1359
+++ trunk/SHAPES/shaper.cpp	2004/07/20 20:02:15	1360
@@ -94,10 +94,10 @@ int main(int argc, char* argv[]){
   if (cmdline_parser (argc, argv, &args_info) != 0)
     exit(1) ;
 
-  if (args_info.input_given){
-    fileName = args_info.input_arg;
-  }
-  else{
+
+  if (args_info.inputs_num > 0) {
+      fileName = args_info.inputs[0];
+  } else {
     std::cerr << "Does not have input file name" << endl;
     exit(1);
   }
@@ -223,7 +223,7 @@ int main(int argc, char* argv[]){
   strcpy(structureFileName, fileName.c_str() );
 
   PDBReader* PDBread = new PDBReader();
-  PDBread->setPDBfile(structureFileName);
+  PDBread->setPDBfileName(structureFileName);
   theAtoms = PDBread->getAtomList();
   printf("Found %d atoms\n", theAtoms.size());