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root/group/trunk/chainLength/GoldThiolsPaper.tex
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Revision 3824 by kstocke1, Tue Dec 18 20:35:30 2012 UTC vs.
Revision 3825 by gezelter, Tue Dec 18 22:33:21 2012 UTC

# Line 366 | Line 366 | chains, and thiolate/solvent interface simplifies to
366   the set of resistors which spans the gold/thiolate interface, thiolate
367   chains, and thiolate/solvent interface simplifies to
368   \begin{equation}
369 <  \frac{T_{n}-T_{1}}{J_z},
369 >  R_{K} = \frac{T_{n}-T_{1}}{J_z},
370    \label{eq:finalG}
371   \end{equation}
372   or the temperature difference between the gold side of the
# Line 533 | Line 533 | chain region to the bulk. % The correlation function i
533   %   \label{eq:biexponential}
534   % \end{equation}
535   % to determine short and long residence timescales and the relative populations of solvent molecules that can escape rapidly.  
536 < We define the mobility of solvent molecules at the interface as
536 > We define the escape rate for trapped solvent molecules at the interface as
537   \begin{equation}
538 < P_{mobile} = \frac{1}{T}\int_{0}^{T} 1 - C(t) dt,
538 > k_{escape} = \left( \int_0^T C(t) dt \right)^{-1}
539    \label{eq:mobility}
540   \end{equation}
541 < where T is the length of the simulation. If all solvent molecule originally entangled in the thiolate chains leave the interfacial layer during time T, $P_{mobile} = 1$. Conversely, if the solvent molecules remain completely entrenched within the chains, $P_{mobile} = 0$.
542 < In figure \ref{figure:res} we show that interfacial solvent mobility decreases as the percentage of long thiolate chains increases.
541 > where T is the length of the simulation.  This is a direct measure of
542 > the rate at which solvent molecules entangled in the thiolate layer
543 > can escape into the bulk.  As $k_{escape} \rightarrow \infty$, the
544 > solvent has become permanently trapped in the thiolate layer.  In
545 > figure \ref{figure:res} we show that interfacial solvent mobility
546 > decreases as the percentage of long thiolate chains increases.
547  
548          
549   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# Line 575 | Line 579 | axes of the thiolates and the entrapped solvent is tim
579   molecular alignment at any time $t$.  The overlap between the director
580   axes of the thiolates and the entrapped solvent is time-averaged,
581          \begin{equation}
582 <          \left \langle \mathbf{d}_{thiolates} \left( t \right) \cdot
583 <            \mathbf{d}_{solvent} \left( t \right) \right \rangle,
582 >          \bar{d} = \langle \mathbf{d}_{thiolates} \left( t \right) \cdot
583 >            \mathbf{d}_{solvent} \left( t \right) \rangle_t
584            \label{eq:orientation}
585          \end{equation}  
586 < and reported in table \ref{table:ordering}.
586 > and reported in figure \ref{fig:Gstack}.
587  
588   Once the solvent molecules have picked up thermal energy from the
589   thiolates, they carry heat away from the gold as they diffuse back

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