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root/group/trunk/chainLength/thiolsRNEMD.bib
Revision: 3819
Committed: Mon Dec 17 18:42:55 2012 UTC (11 years, 8 months ago) by gezelter
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Adding references, force fields, ordering

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# Content
1 %% This BibTeX bibliography file was created using BibDesk.
2 %% http://bibdesk.sourceforge.net/
3
4
5 %% Created for Dan Gezelter at 2012-12-17 13:38:45 -0500
6
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8 %% Saved with string encoding Unicode (UTF-8)
9
10
11 @string{acp = {Adv. Chem. Phys.}}
12
13 @string{bj = {Biophys. J.}}
14
15 @string{ccp5 = {CCP5 Information Quarterly}}
16
17 @string{cp = {Chem. Phys.}}
18
19 @string{cpl = {Chem. Phys. Lett.}}
20
21 @string{ea = {Electrochim. Acta}}
22
23 @string{jacs = {J. Am. Chem. Soc.}}
24
25 @string{jbc = {J. Biol. Chem.}}
26
27 @string{jcat = {J. Catalysis}}
28
29 @string{jcc = {J. Comp. Chem.}}
30
31 @string{jcop = {J. Comp. Phys.}}
32
33 @string{jcp = {J. Chem. Phys.}}
34
35 @string{jctc = {J. Chem. Theory Comp.}}
36
37 @string{jmc = {J. Med. Chem.}}
38
39 @string{jml = {J. Mol. Liq.}}
40
41 @string{jmm = {J. Mol. Model.}}
42
43 @string{jpc = {J. Phys. Chem.}}
44
45 @string{jpca = {J. Phys. Chem. A}}
46
47 @string{jpcb = {J. Phys. Chem. B}}
48
49 @string{jpcc = {J. Phys. Chem. C}}
50
51 @string{jpcl = {J. Phys. Chem. Lett.}}
52
53 @string{mp = {Mol. Phys.}}
54
55 @string{pams = {Proc. Am. Math Soc.}}
56
57 @string{pccp = {Phys. Chem. Chem. Phys.}}
58
59 @string{pnas = {Proc. Natl. Acad. Sci. USA}}
60
61 @string{pr = {Phys. Rev.}}
62
63 @string{pra = {Phys. Rev. A}}
64
65 @string{prb = {Phys. Rev. B}}
66
67 @string{pre = {Phys. Rev. E}}
68
69 @string{prl = {Phys. Rev. Lett.}}
70
71 @string{rmp = {Rev. Mod. Phys.}}
72
73 @string{ss = {Surf. Sci.}}
74
75
76 @article{doi:10.1021/jp034405s,
77 Abstract = { We use the universal force field (UFF) developed by Rapp{\'e} et al. (Rapp{\'e}, A. K.; Casewit, C. J.; Colwell, K. S.; Goddard, W. A.; Skiff, W. M. J. Am. Chem. Soc. 1992, 114, 10024) and the specific classical potentials developed from ab initio calculations for Au−benzenedithiol (BDT) molecule interaction to perform molecular dynamics (MD) simulations of a BDT monolayer on an extended Au(111) surface. The simulation system consists of 100 BDT molecules and three rigid Au layers in a simulation box that is rhombic in the plane of the Au surface. A multiple time scale algorithm, the double-reversible reference system propagator algorithm (double RESPA) based on the Nos{\'e}−Hoover dynamics scheme, and the Ewald summation with a boundary correction term for the treatment of long-range electrostatic interactions in a 2-D slab have been incorporated into the simulation technique. We investigate the local bonding properties of Au−BDT contacts and molecular orientation distributions of BDT molecules. These results show that whereas different basis sets from ab initio calculations may generate different local bonding geometric parameters (the bond length, etc.) the packing structures of BDT molecules maintain approximately the same well-ordered herringbone structure with small peak differences in the probability distributions of global geometric parameters. The methodology developed here opens an avenue for classical simulations of a metal−molecule−metal complex in molecular electronics devices. },
78 Author = {Leng, Y. and Keffer, David J. and Cummings, Peter T.},
79 Date-Added = {2012-12-17 18:38:38 +0000},
80 Date-Modified = {2012-12-17 18:38:38 +0000},
81 Doi = {10.1021/jp034405s},
82 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp034405s},
83 Journal = {J. Phys. Chem. B},
84 Number = {43},
85 Pages = {11940-11950},
86 Title = {Structure and Dynamics of a Benzenedithiol Monolayer on a Au(111) Surface},
87 Url = {http://pubs.acs.org/doi/abs/10.1021/jp034405s},
88 Volume = {107},
89 Year = {2003},
90 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp034405s},
91 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp034405s}}
92
93 @article{hautman:4994,
94 Author = {Joseph Hautman and Michael L. Klein},
95 Date-Added = {2012-12-17 18:38:26 +0000},
96 Date-Modified = {2012-12-17 18:38:26 +0000},
97 Doi = {10.1063/1.457621},
98 Journal = {J. Chem. Phys.},
99 Keywords = {MOLECULAR DYNAMICS CALCULATIONS; SIMULATION; MONOLAYERS; THIOLS; ALKYL COMPOUNDS; CHAINS; SURFACE STRUCTURE; GOLD; SUBSTRATES; CHEMISORPTION; SURFACE PROPERTIES},
100 Number = {8},
101 Pages = {4994-5001},
102 Publisher = {AIP},
103 Title = {Simulation of a monolayer of alkyl thiol chains},
104 Url = {http://link.aip.org/link/?JCP/91/4994/1},
105 Volume = {91},
106 Year = {1989},
107 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/91/4994/1},
108 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.457621}}
109
110 @article{vlugt:cpc2007154,
111 Author = {Philipp Schapotschnikow and Ren{\'e} Pool and Thijs J.H. Vlugt},
112 Date-Added = {2012-12-17 18:38:20 +0000},
113 Date-Modified = {2012-12-17 18:38:20 +0000},
114 Doi = {DOI: 10.1016/j.cpc.2007.02.028},
115 Issn = {0010-4655},
116 Journal = {Comput. Phys. Commun.},
117 Keywords = {Gold nanocrystals},
118 Note = {Proceedings of the Conference on Computational Physics 2006 - CCP 2006, Conference on Computational Physics 2006},
119 Number = {1-2},
120 Pages = {154 - 157},
121 Title = {Selective adsorption of alkyl thiols on gold in different geometries},
122 Url = {http://www.sciencedirect.com/science/article/B6TJ5-4N3WYP0-1/2/66dbe8892f456c230b9b8fcd9c23f456},
123 Volume = {177},
124 Year = {2007},
125 Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/B6TJ5-4N3WYP0-1/2/66dbe8892f456c230b9b8fcd9c23f456},
126 Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.cpc.2007.02.028}}
127
128 @article{landman:1998,
129 Abstract = { Equilibrium structures and thermodynamic properties of dodecanethiol self-assembled monolayers on small (Au140) and larger (Au1289) gold nanocrystallites were investigated with the use of molecular dynamics simulations. Compact passivating monolayers are formed on the (111) and (100) facets of the nanocrystallites, with adsorption site geometries differing from those found on extended flat Au(111) and Au(100) surfaces, as well as with higher packing densities. At lower temperatures the passivating molecules organize into preferentially oriented molecular bundles with the molecules in the bundles aligned approximately parallel to each other. Thermal disordering starts at T ≳200 K, initiating at the boundaries of the bundles and involving generation of intramolecular conformational (gauche) defects which occur first at bonds near the chains' outer terminus and propagate inward toward the underlying gold nanocrystalline surface as the temperature is increased. The disordering process culminates in melting of the molecular bundles, resulting in a uniform orientational distribution of the molecules around the gold nanocrystallites. From the inflection points in the calculated caloric curves, melting temperatures were determined as 280 and 294 K for the monolayers adsorbed on the smaller and larger gold nanocrystallites, respectively. These temperatures are significantly lower than the melting temperature estimated for a self-assembled monolayer of dodecanethiol adsorbed on an extended Au(111) surface. The theoretically predicted disordering mechanisms and melting scenario, resulting in a temperature-broadened transition, support recent experimental investigations. },
130 Author = {Luedtke, W. D. and Landman, Uzi},
131 Date-Added = {2012-12-17 18:38:13 +0000},
132 Date-Modified = {2012-12-17 18:38:13 +0000},
133 Doi = {10.1021/jp981745i},
134 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp981745i},
135 Journal = {J. Phys. Chem. B},
136 Number = {34},
137 Pages = {6566-6572},
138 Title = {Structure and Thermodynamics of Self-Assembled Monolayers on Gold Nanocrystallites},
139 Url = {http://pubs.acs.org/doi/abs/10.1021/jp981745i},
140 Volume = {102},
141 Year = {1998},
142 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp981745i},
143 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp981745i}}
144
145 @article{PhysRevLett.96.186101,
146 Author = {Ge, Zhenbin and Cahill, David G. and Braun, Paul V.},
147 Date-Added = {2012-12-17 17:44:53 +0000},
148 Date-Modified = {2012-12-17 17:44:53 +0000},
149 Doi = {10.1103/PhysRevLett.96.186101},
150 Journal = prl,
151 Month = {May},
152 Number = {18},
153 Numpages = {4},
154 Pages = {186101},
155 Publisher = {American Physical Society},
156 Title = {Thermal Conductance of Hydrophilic and Hydrophobic Interfaces},
157 Volume = {96},
158 Year = {2006},
159 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevLett.96.186101}}
160
161 @article{Larson:2007hw,
162 Abstract = {Nanoparticles which consist of a plasmonic layer and an iron oxide moiety could provide a promising platform for development of multimodal imaging and therapy approaches in future medicine. However, the feasibility of this platform has yet to be fully explored. In this study we demonstrated the use of gold-coated iron oxide hybrid nanoparticles for combined molecular specific MRI/optical imaging and photothermal therapy of cancer cells. The gold layer exhibits a surface plasmon resonance that provides optical contrast due to light scattering in the visible region and also presents a convenient surface for conjugating targeting moieties, while the iron oxide cores give strong T-2 (spin-spin relaxation time) contrast. The strong optical absorption of the plasmonic gold layer also makes these nanoparticles a promising agent for photothermal therapy. We synthesized hybrid nanoparticles which specifically target epidermal growth factor receptor (EGFR), a common biomarker for many epithelial cancers. We demonstrated molecular specific MRI and optical imaging in MDA-MB-468 breast cancer cells. Furthermore, we showed that receptor-mediated aggregation of anti-EGFR hybrid nanoparticles allows selective destruction of highly proliferative cancer cells using a nanosecond pulsed laser at 700 nm wavelength, a significant shift from the peak absorbance of isolated hybrid nanoparticles at 532 nm.},
163 Address = {DIRAC HOUSE, TEMPLE BACK, BRISTOL BS1 6BE, ENGLAND},
164 Author = {Larson, Timothy A. and Bankson, James and Aaron, Jesse and Sokolov, Konstantin},
165 Date = {AUG 15 2007},
166 Date-Added = {2012-12-17 17:44:44 +0000},
167 Date-Modified = {2012-12-17 17:44:44 +0000},
168 Doi = {ARTN 325101},
169 Journal = {Nanotechnology},
170 Publisher = {IOP PUBLISHING LTD},
171 Timescited = {5},
172 Title = {Hybrid plasmonic magnetic nanoparticles as molecular specific agents for MRI/optical imaging and photothermal therapy of cancer cells},
173 Volume = {18},
174 Year = {2007},
175 Bdsk-Url-1 = {http://dx.doi.org/325101}}
176
177 @article{Huff:2007ye,
178 Abstract = {Plasmon-resonant gold nanorods, which have large absorption cross sections at near-infrared frequencies, are excellent candidates as multifunctional agents for image-guided therapies based on localized hyperthermia. The controlled modification of the surface chemistry of the nanorods is of critical importance, as issues of cell-specific targeting and nonspecific uptake must be addressed prior to clinical evaluation. Nanorods coated with cetyltrimethylammonium bromide (a cationic surfactant used in nanorod synthesis) are internalized within hours into KB cells by a nonspecific uptake pathway, whereas the careful removal of cetyltrimethylammonium bromide from nanorods functionalized with folate results in their accumulation on the cell surface over the same time interval. In either case, the nanorods render the tumor cells highly susceptible to photothermal damage when irradiated at the nanorods' longitudinal plasmon resonance, generating extensive blebbing of the cell membrane at laser fluences as low as 30 J/cm(2).},
179 Address = {UNITEC HOUSE, 3RD FLOOR, 2 ALBERT PLACE, FINCHLEY CENTRAL, LONDON, N3 1QB, ENGLAND},
180 Author = {Huff, Terry B. and Tong, Ling and Zhao, Yan and Hansen, Matthew N. and Cheng, Ji-Xin and Wei, Alexander},
181 Date = {FEB 2007},
182 Date-Added = {2012-12-17 17:44:36 +0000},
183 Date-Modified = {2012-12-17 17:44:36 +0000},
184 Doi = {DOI 10.2217/17435889.2.1.125},
185 Journal = {Nanomedicine},
186 Keywords = {folate receptor; hyperthermia; imaging; nanorods; nonlinear optical microscopy; plasmon resonance; targeted therapy},
187 Pages = {125-132},
188 Publisher = {FUTURE MEDICINE LTD},
189 Timescited = {13},
190 Title = {Hyperthermic effects of gold nanorods on tumor cells},
191 Volume = {2},
192 Year = {2007},
193 Bdsk-Url-1 = {http://dx.doi.org/10.2217/17435889.2.1.125}}
194
195 @article{2012MolPh.110..691K,
196 Adsnote = {Provided by the SAO/NASA Astrophysics Data System},
197 Adsurl = {http://adsabs.harvard.edu/abs/2012MolPh.110..691K},
198 Author = {{Kuang}, S. and {Gezelter}, J.~D.},
199 Date-Added = {2012-12-17 16:57:32 +0000},
200 Date-Modified = {2012-12-17 16:57:32 +0000},
201 Doi = {10.1080/00268976.2012.680512},
202 Journal = mp,
203 Month = may,
204 Pages = {691-701},
205 Title = {{Velocity shearing and scaling RNEMD: a minimally perturbing method for simulating temperature and momentum gradients}},
206 Volume = 110,
207 Year = 2012,
208 Bdsk-Url-1 = {http://dx.doi.org/10.1080/00268976.2012.680512}}
209
210 @article{Kuang:2010uq,
211 Abstract = {We present a new method for introducing stable nonequilibrium velocity and temperature gradients in molecular dynamics simulations of heterogeneous systems. This method extends earlier reverse nonequilibrium molecular dynamics (RNEMD) methods which use momentum exchange swapping moves. The standard swapping moves can create nonthermal velocity distributions and are difficult to use for interfacial calculations. By using nonisotropic velocity scaling (NIVS) on the molecules in specific regions of a system, it is possible to impose momentum or thermal flux between regions of a simulation while conserving the linear momentum and total energy of the system. To test the method, we have computed the thermal conductivity of model liquid and solid systems as well as the interfacial thermal conductivity of a metal-water interface. We find that the NIVS-RNEMD improves the problematic velocity distributions that develop in other RNEMD methods. (C) 2010 American Institute of Physics. [doi:10.1063/1.3499947]},
212 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
213 Author = {Kuang, Shenyu and Gezelter, J. Daniel},
214 Date-Added = {2012-12-17 16:57:32 +0000},
215 Date-Modified = {2012-12-17 16:57:32 +0000},
216 Doi = {DOI 10.1063/1.3499947},
217 Isi = {000283753600002},
218 Isi-Recid = {193016794},
219 Isi-Ref-Recids = {60145802 144493351 117276201 115646662 123505188 127776876 130292830 85727532 119238135 150775186 59492217 125039697 193016795 175378314 85968509 172836401 122778971 54857943 86405859 172632609 156107458 159097542 142688207 82674909 100685406 99953572 110174777 171920521 130851765 180726558 137551818 109033408 79855786 78429093 145194994 126857514 146930943 71842426 69663514 185905461 119238036 160903603 137423992 156192449 156192449 66976670 108571354 144824430 127920256 109783788 145710667 179637533},
220 Journal = jcp,
221 Month = oct,
222 Number = {16},
223 Pages = {164101},
224 Publisher = {AMER INST PHYSICS},
225 Times-Cited = {0},
226 Title = {A gentler approach to RNEMD: Nonisotropic velocity scaling for computing thermal conductivity and shear viscosity},
227 Volume = {133},
228 Year = {2010},
229 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000283753600002}}
230
231 @article{JiangHao_jp802942v,
232 Abstract = {Abstract: Nonequilibrium molecular dynamics simulations with the nonpolarizable SPC/E (Berendsen et al., J. Phys. Chem. 1987, 91, 6269) and the polarizable COS/G2 (Yu and van Gunsteren, J. Chem. Phys. 2004, 121, 9549) force fields have been employed to calculate the thermal conductivity and other associated properties of methane hydrate over a temperature range from 30 to 260 K. The calculated results are compared to experimental data over this same range. The values of the thermal conductivity calculated with the COS/G2 model are closer to the experimental values than are those calculated with the nonpolarizable SPC/E model. The calculations match the temperature trend in the experimental data at temperatures below 50 K; however, they exhibit a slight decrease in thermal conductivity at higher temperatures in comparison to an opposite trend in the experimental data. The calculated thermal conductivity values are found to be relatively insensitive to the occupancy of the cages except at low (T d 50 K) temperatures, which indicates that the differences between the two lattice structures may have a more dominant role than generally thought in explaining the low thermal conductivity of methane hydrate compared to ice Ih. The introduction of defects into the water lattice is found to cause a reduction in the thermal conductivity but to have a negligible impact on its temperature dependence.},
233 Affiliation = {National Energy Technology Laboratory, U.S. Department of Energy, Post Office Box 10940, Pittsburgh, Pennsylvania 15236, Department of Chemistry and Center for Molecular and Materials Simulations, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, and Parsons Project Services, Inc., South Park, Pennsylvania 15129},
234 Author = {Jiang, Hao and Myshakin, Evgeniy M. and Jordan, Kenneth D. and Warzinski, Robert P.},
235 Date-Added = {2012-12-17 16:57:19 +0000},
236 Date-Modified = {2012-12-17 16:57:19 +0000},
237 Doi = {10.1021/jp802942v},
238 Issn = {1520-6106},
239 Journal = jpcb,
240 Title = {Molecular Dynamics Simulations of the Thermal Conductivity of Methane Hydrate},
241 Year = {2008},
242 Bdsk-Url-1 = {http://pubs3.acs.org/acs/journals/doilookup?in_doi=10.1021/jp802942v}}
243
244 @article{Schelling:2002dp,
245 Author = {Schelling, P. K. and Phillpot, S. R. and Keblinski, P.},
246 Date = {APR 1 2002},
247 Date-Added = {2012-12-17 16:57:10 +0000},
248 Date-Modified = {2012-12-17 16:57:10 +0000},
249 Doi = {10.1103/PhysRevB.65.144306},
250 Isi = {WOS:000174980300055},
251 Issn = {1098-0121},
252 Journal = prb,
253 Month = {Apr},
254 Number = {14},
255 Pages = {144306},
256 Publication-Type = {J},
257 Times-Cited = {288},
258 Title = {Comparison of atomic-level simulation methods for computing thermal conductivity},
259 Volume = {65},
260 Year = {2002},
261 Z8 = {12},
262 Z9 = {296},
263 Zb = {0},
264 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.65.144306}}
265
266 @article{Evans:2002ai,
267 Author = {Evans, D. J. and Searles, D. J.},
268 Date = {NOV 2002},
269 Date-Added = {2012-12-17 16:56:59 +0000},
270 Date-Modified = {2012-12-17 16:56:59 +0000},
271 Doi = {10.1080/00018730210155133},
272 Isi = {WOS:000179448200001},
273 Issn = {0001-8732},
274 Journal = {Adv. Phys.},
275 Month = {Nov},
276 Number = {7},
277 Pages = {1529--1585},
278 Publication-Type = {J},
279 Times-Cited = {309},
280 Title = {The fluctuation theorem},
281 Volume = {51},
282 Year = {2002},
283 Z8 = {3},
284 Z9 = {311},
285 Zb = {9},
286 Bdsk-Url-1 = {http://dx.doi.org/10.1080/00018730210155133}}
287
288 @article{Berthier:2002ij,
289 Author = {Berthier, L. and Barrat, J. L.},
290 Date = {APR 8 2002},
291 Date-Added = {2012-12-17 16:56:47 +0000},
292 Date-Modified = {2012-12-17 16:56:47 +0000},
293 Doi = {10.1063/1.1460862},
294 Isi = {WOS:000174634200036},
295 Issn = {0021-9606},
296 Journal = jcp,
297 Month = {Apr},
298 Number = {14},
299 Pages = {6228--6242},
300 Publication-Type = {J},
301 Times-Cited = {172},
302 Title = {Nonequilibrium dynamics and fluctuation-dissipation relation in a sheared fluid},
303 Volume = {116},
304 Year = {2002},
305 Z8 = {0},
306 Z9 = {172},
307 Zb = {1},
308 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1460862}}
309
310 @article{MAGINN:1993hc,
311 Author = {MAGINN, E. J. and BELL, A. T. and THEODOROU, D. N.},
312 Date = {APR 22 1993},
313 Date-Added = {2012-12-17 16:56:40 +0000},
314 Date-Modified = {2012-12-17 16:56:40 +0000},
315 Doi = {10.1021/j100118a038},
316 Isi = {WOS:A1993KY46600039},
317 Issn = {0022-3654},
318 Journal = jpc,
319 Month = {Apr},
320 Number = {16},
321 Pages = {4173--4181},
322 Publication-Type = {J},
323 Times-Cited = {198},
324 Title = {TRANSPORT DIFFUSIVITY OF METHANE IN SILICALITE FROM EQUILIBRIUM AND NONEQUILIBRIUM SIMULATIONS},
325 Volume = {97},
326 Year = {1993},
327 Z8 = {4},
328 Z9 = {201},
329 Zb = {0},
330 Bdsk-Url-1 = {http://dx.doi.org/10.1021/j100118a038}}
331
332 @article{ERPENBECK:1984sp,
333 Author = {ERPENBECK, J. J.},
334 Date = {1984},
335 Date-Added = {2012-12-17 16:56:32 +0000},
336 Date-Modified = {2012-12-17 16:56:32 +0000},
337 Doi = {10.1103/PhysRevLett.52.1333},
338 Isi = {WOS:A1984SK96700021},
339 Issn = {0031-9007},
340 Journal = prl,
341 Number = {15},
342 Pages = {1333--1335},
343 Publication-Type = {J},
344 Times-Cited = {189},
345 Title = {SHEAR VISCOSITY OF THE HARD-SPHERE FLUID VIA NONEQUILIBRIUM MOLECULAR-DYNAMICS},
346 Volume = {52},
347 Year = {1984},
348 Z8 = {0},
349 Z9 = {189},
350 Zb = {1},
351 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevLett.52.1333}}
352
353 @article{Evans:1982zk,
354 Author = {Evans, Denis J.},
355 Date-Added = {2012-12-17 16:56:24 +0000},
356 Date-Modified = {2012-12-17 16:56:24 +0000},
357 Journal = {Physics Letters A},
358 Number = {9},
359 Pages = {457--460},
360 Title = {Homogeneous NEMD algorithm for thermal conductivity--Application of non-canonical linear response theory},
361 Ty = {JOUR},
362 Url = {http://www.sciencedirect.com/science/article/B6TVM-46SXM58-S0/1/b270d693318250f3ed0dbce1a535ea50},
363 Volume = {91},
364 Year = {1982},
365 Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/B6TVM-46SXM58-S0/1/b270d693318250f3ed0dbce1a535ea50}}
366
367 @article{ASHURST:1975tg,
368 Author = {ASHURST, W. T. and HOOVER, W. G.},
369 Date = {1975},
370 Date-Added = {2012-12-17 16:56:05 +0000},
371 Date-Modified = {2012-12-17 16:56:05 +0000},
372 Doi = {10.1103/PhysRevA.11.658},
373 Isi = {WOS:A1975V548400036},
374 Issn = {1050-2947},
375 Journal = pra,
376 Number = {2},
377 Pages = {658--678},
378 Publication-Type = {J},
379 Times-Cited = {295},
380 Title = {DENSE-FLUID SHEAR VISCOSITY VIA NONEQUILIBRIUM MOLECULAR-DYNAMICS},
381 Volume = {11},
382 Year = {1975},
383 Z8 = {3},
384 Z9 = {298},
385 Zb = {1},
386 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevA.11.658}}
387
388 @article{kinaci:014106,
389 Author = {A. Kinaci and J. B. Haskins and T. \c{C}a\u{g}in},
390 Date-Added = {2012-12-17 16:55:56 +0000},
391 Date-Modified = {2012-12-17 16:55:56 +0000},
392 Doi = {10.1063/1.4731450},
393 Eid = {014106},
394 Journal = jcp,
395 Keywords = {argon; elemental semiconductors; Ge-Si alloys; molecular dynamics method; nanostructured materials; porous semiconductors; silicon; thermal conductivity},
396 Number = {1},
397 Numpages = {8},
398 Pages = {014106},
399 Publisher = {AIP},
400 Title = {On calculation of thermal conductivity from Einstein relation in equilibrium molecular dynamics},
401 Url = {http://link.aip.org/link/?JCP/137/014106/1},
402 Volume = {137},
403 Year = {2012},
404 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/137/014106/1},
405 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4731450}}
406
407 @article{che:6888,
408 Author = {Jianwei Che and Tahir Cagin and Weiqiao Deng and William A. Goddard III},
409 Date-Added = {2012-12-17 16:55:48 +0000},
410 Date-Modified = {2012-12-17 16:55:48 +0000},
411 Doi = {10.1063/1.1310223},
412 Journal = jcp,
413 Keywords = {diamond; thermal conductivity; digital simulation; vacancies (crystal); Green's function methods; isotope effects},
414 Number = {16},
415 Pages = {6888-6900},
416 Publisher = {AIP},
417 Title = {Thermal conductivity of diamond and related materials from molecular dynamics simulations},
418 Url = {http://link.aip.org/link/?JCP/113/6888/1},
419 Volume = {113},
420 Year = {2000},
421 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/113/6888/1},
422 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1310223}}
423
424 @article{Viscardy:2007rp,
425 Abstract = {The thermal conductivity is calculated with the Helfand-moment method in the Lennard-Jones fluid near the triple point. The Helfand moment of thermal conductivity is here derived for molecular dynamics with periodic boundary conditions. Thermal conductivity is given by a generalized Einstein relation with this Helfand moment. The authors compute thermal conductivity by this new method and compare it with their own values obtained by the standard Green-Kubo method. The agreement is excellent. (C) 2007 American Institute of Physics.},
426 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
427 Author = {Viscardy, S. and Servantie, J. and Gaspard, P.},
428 Date = {MAY 14 2007},
429 Date-Added = {2012-12-17 16:55:32 +0000},
430 Date-Modified = {2012-12-17 16:55:32 +0000},
431 Doi = {ARTN 184513},
432 Journal = jcp,
433 Publisher = {AMER INST PHYSICS},
434 Timescited = {1},
435 Title = {Transport and Helfand moments in the Lennard-Jones fluid. II. Thermal conductivity},
436 Volume = {126},
437 Year = {2007},
438 Bdsk-Url-1 = {http://dx.doi.org/184513}}
439
440 @article{PhysRev.119.1,
441 Author = {Helfand, Eugene},
442 Date-Added = {2012-12-17 16:55:19 +0000},
443 Date-Modified = {2012-12-17 16:55:19 +0000},
444 Doi = {10.1103/PhysRev.119.1},
445 Journal = {Phys. Rev.},
446 Month = {Jul},
447 Number = {1},
448 Numpages = {8},
449 Pages = {1--9},
450 Publisher = {American Physical Society},
451 Title = {Transport Coefficients from Dissipation in a Canonical Ensemble},
452 Volume = {119},
453 Year = {1960},
454 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRev.119.1}}
455
456 @article{PhysRevA.34.1449,
457 Author = {Evans, Denis J.},
458 Date-Added = {2012-12-17 16:55:19 +0000},
459 Date-Modified = {2012-12-17 16:55:19 +0000},
460 Doi = {10.1103/PhysRevA.34.1449},
461 Journal = {Phys. Rev. A},
462 Month = {Aug},
463 Number = {2},
464 Numpages = {4},
465 Pages = {1449--1453},
466 Publisher = {American Physical Society},
467 Title = {Thermal conductivity of the Lennard-Jones fluid},
468 Volume = {34},
469 Year = {1986},
470 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevA.34.1449}}
471
472 @article{MASSOBRIO:1984bl,
473 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
474 Author = {MASSOBRIO, C and CICCOTTI, G},
475 Date = {1984},
476 Date-Added = {2012-12-17 16:55:03 +0000},
477 Date-Modified = {2012-12-17 16:55:03 +0000},
478 Journal = pra,
479 Pages = {3191-3197},
480 Publisher = {AMERICAN PHYSICAL SOC},
481 Timescited = {29},
482 Title = {LENNARD-JONES TRIPLE-POINT CONDUCTIVITY VIA WEAK EXTERNAL FIELDS},
483 Volume = {30},
484 Year = {1984}}
485
486 @article{PhysRevB.37.5677,
487 Author = {Heyes, David M.},
488 Date-Added = {2012-12-17 16:54:55 +0000},
489 Date-Modified = {2012-12-17 16:54:55 +0000},
490 Doi = {10.1103/PhysRevB.37.5677},
491 Journal = prb,
492 Month = {Apr},
493 Number = {10},
494 Numpages = {19},
495 Pages = {5677--5696},
496 Publisher = {American Physical Society},
497 Title = {Transport coefficients of Lennard-Jones fluids: A molecular-dynamics and effective-hard-sphere treatment},
498 Volume = {37},
499 Year = {1988},
500 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.37.5677}}
501
502 @article{PhysRevB.80.195406,
503 Author = {Juv\'e, Vincent and Scardamaglia, Mattia and Maioli, Paolo and Crut, Aur\'elien and Merabia, Samy and Joly, Laurent and Del Fatti, Natalia and Vall\'ee, Fabrice},
504 Date-Added = {2012-12-17 16:54:55 +0000},
505 Date-Modified = {2012-12-17 16:54:55 +0000},
506 Doi = {10.1103/PhysRevB.80.195406},
507 Journal = prb,
508 Month = {Nov},
509 Number = {19},
510 Numpages = {6},
511 Pages = {195406},
512 Publisher = {American Physical Society},
513 Title = {Cooling dynamics and thermal interface resistance of glass-embedded metal nanoparticles},
514 Volume = {80},
515 Year = {2009},
516 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.80.195406}}
517
518 @article{Wang10082007,
519 Abstract = {At the level of individual molecules, familiar concepts of heat transport no longer apply. When large amounts of heat are transported through a molecule, a crucial process in molecular electronic devices, energy is carried by discrete molecular vibrational excitations. We studied heat transport through self-assembled monolayers of long-chain hydrocarbon molecules anchored to a gold substrate by ultrafast heating of the gold with a femtosecond laser pulse. When the heat reached the methyl groups at the chain ends, a nonlinear coherent vibrational spectroscopy technique detected the resulting thermally induced disorder. The flow of heat into the chains was limited by the interface conductance. The leading edge of the heat burst traveled ballistically along the chains at a velocity of 1 kilometer per second. The molecular conductance per chain was 50 picowatts per kelvin.},
520 Author = {Wang, Zhaohui and Carter, Jeffrey A. and Lagutchev, Alexei and Koh, Yee Kan and Seong, Nak-Hyun and Cahill, David G. and Dlott, Dana D.},
521 Date-Added = {2012-12-17 16:54:31 +0000},
522 Date-Modified = {2012-12-17 16:54:31 +0000},
523 Doi = {10.1126/science.1145220},
524 Eprint = {http://www.sciencemag.org/content/317/5839/787.full.pdf},
525 Journal = {Science},
526 Number = {5839},
527 Pages = {787-790},
528 Title = {Ultrafast Flash Thermal Conductance of Molecular Chains},
529 Url = {http://www.sciencemag.org/content/317/5839/787.abstract},
530 Volume = {317},
531 Year = {2007},
532 Bdsk-Url-1 = {http://www.sciencemag.org/content/317/5839/787.abstract},
533 Bdsk-Url-2 = {http://dx.doi.org/10.1126/science.1145220}}
534
535 @article{doi:10.1021/la904855s,
536 Author = {Alper, Joshua and Hamad-Schifferli, Kimberly},
537 Date-Added = {2012-12-17 16:54:12 +0000},
538 Date-Modified = {2012-12-17 16:54:12 +0000},
539 Doi = {10.1021/la904855s},
540 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/la904855s},
541 Journal = {Langmuir},
542 Note = {PMID: 20166728},
543 Number = {6},
544 Pages = {3786-3789},
545 Title = {Effect of Ligands on Thermal Dissipation from Gold Nanorods},
546 Url = {http://pubs.acs.org/doi/abs/10.1021/la904855s},
547 Volume = {26},
548 Year = {2010},
549 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/la904855s},
550 Bdsk-Url-2 = {http://dx.doi.org/10.1021/la904855s}}
551
552 @article{doi:10.1021/jp048375k,
553 Abstract = { Water- and alcohol-soluble AuPd nanoparticles have been investigated to determine the effect of the organic stabilizing group on the thermal conductance G of the particle/fluid interface. The thermal decays of tiopronin-stabilized 3−5-nm diameter AuPd alloy nanoparticles, thioalkylated ethylene glycol-stabilized 3−5-nm diameter AuPd nanoparticles, and cetyltrimethylammonium bromide-stabilized 22-nm diameter Au-core/AuPd-shell nanoparticles give thermal conductances G ≈ 100−300 MW m-2 K-1 for the particle/water interfaces, approximately an order of magnitude larger than the conductance of the interfaces between alkanethiol-terminated AuPd nanoparticles and toluene. The similar values of G for particles ranging in size from 3 to 24 nm with widely varying surface chemistry indicate that the thermal coupling between AuPd nanoparticles and water is strong regardless of the self-assembled stabilizing group. },
554 Author = {Ge, Zhenbin and Cahill, David G. and Braun, Paul V.},
555 Date-Added = {2012-12-17 16:54:03 +0000},
556 Date-Modified = {2012-12-17 16:54:03 +0000},
557 Doi = {10.1021/jp048375k},
558 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp048375k},
559 Journal = jpcb,
560 Number = {49},
561 Pages = {18870-18875},
562 Title = {AuPd Metal Nanoparticles as Probes of Nanoscale Thermal Transport in Aqueous Solution},
563 Url = {http://pubs.acs.org/doi/abs/10.1021/jp048375k},
564 Volume = {108},
565 Year = {2004},
566 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp048375k},
567 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp048375k}}
568
569 @article{doi:10.1021/jp8051888,
570 Abstract = { Thermal transport between CTAB passivated gold nanorods and solvent is studied by an optical pump−probe technique. Increasing the free CTAB concentration from 1 mM to 10 mM causes a ∼3× increase in the CTAB layer's effective thermal interface conductance and a corresponding shift in the longitudinal surface plasmon resonance. The transition occurs near the CTAB critical micelle concentration, revealing the importance of the role of free ligand on thermal transport. },
571 Author = {Schmidt, Aaron J. and Alper, Joshua D. and Chiesa, Matteo and Chen, Gang and Das, Sarit K. and Hamad-Schifferli, Kimberly},
572 Date-Added = {2012-12-17 16:54:03 +0000},
573 Date-Modified = {2012-12-17 16:54:03 +0000},
574 Doi = {10.1021/jp8051888},
575 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp8051888},
576 Journal = jpcc,
577 Number = {35},
578 Pages = {13320-13323},
579 Title = {Probing the Gold Nanorod−Ligand−Solvent Interface by Plasmonic Absorption and Thermal Decay},
580 Url = {http://pubs.acs.org/doi/abs/10.1021/jp8051888},
581 Volume = {112},
582 Year = {2008},
583 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp8051888},
584 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp8051888}}
585
586 @article{PhysRevB.67.054302,
587 Author = {Costescu, Ruxandra M. and Wall, Marcel A. and Cahill, David G.},
588 Date-Added = {2012-12-17 16:53:48 +0000},
589 Date-Modified = {2012-12-17 16:53:48 +0000},
590 Doi = {10.1103/PhysRevB.67.054302},
591 Journal = prb,
592 Month = {Feb},
593 Number = {5},
594 Numpages = {5},
595 Pages = {054302},
596 Publisher = {American Physical Society},
597 Title = {Thermal conductance of epitaxial interfaces},
598 Volume = {67},
599 Year = {2003},
600 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.67.054302}}
601
602 @article{cahill:793,
603 Author = {David G. Cahill and Wayne K. Ford and Kenneth E. Goodson and Gerald D. Mahan and Arun Majumdar and Humphrey J. Maris and Roberto Merlin and Simon R. Phillpot},
604 Date-Added = {2012-12-17 16:53:36 +0000},
605 Date-Modified = {2012-12-17 16:53:36 +0000},
606 Doi = {10.1063/1.1524305},
607 Journal = {J. Appl. Phys.},
608 Keywords = {nanostructured materials; reviews; thermal conductivity; interface phenomena; molecular dynamics method; thermal management (packaging); Boltzmann equation; carbon nanotubes; porosity; semiconductor superlattices; thermoreflectance; interface phonons; thermoelectricity; phonon-phonon interactions},
609 Number = {2},
610 Pages = {793-818},
611 Publisher = {AIP},
612 Title = {Nanoscale thermal transport},
613 Url = {http://link.aip.org/link/?JAP/93/793/1},
614 Volume = {93},
615 Year = {2003},
616 Bdsk-Url-1 = {http://link.aip.org/link/?JAP/93/793/1},
617 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1524305}}
618
619 @article{Eapen:2007mw,
620 Abstract = {In a well-dispersed nanofluid with strong cluster-fluid attraction, thermal conduction paths can arise through percolating amorphouslike interfacial structures. This results in a thermal conductivity enhancement beyond the Maxwell limit of 3 phi, with phi being the nanoparticle volume fraction. Our findings from nonequilibrium molecular dynamics simulations, which are amenable to experimental verification, can provide a theoretical basis for the development of future nanofluids.},
621 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
622 Author = {Eapen, Jacob and Li, Ju and Yip, Sidney},
623 Date = {DEC 2007},
624 Date-Added = {2012-12-17 16:53:30 +0000},
625 Date-Modified = {2012-12-17 16:53:30 +0000},
626 Doi = {ARTN 062501},
627 Journal = pre,
628 Publisher = {AMER PHYSICAL SOC},
629 Timescited = {0},
630 Title = {Beyond the Maxwell limit: Thermal conduction in nanofluids with percolating fluid structures},
631 Volume = {76},
632 Year = {2007},
633 Bdsk-Url-1 = {http://dx.doi.org/062501}}
634
635 @article{Xue:2003ya,
636 Abstract = {Using nonequilibrium molecular dynamics simulations in which a temperature gradient is imposed, we determine the thermal resistance of a model liquid-solid interface. Our simulations reveal that the strength of the bonding between liquid and solid atoms plays a key role in determining interfacial thermal resistance. Moreover, we find that the functional dependence of the thermal resistance on the strength of the liquid-solid interactions exhibits two distinct regimes: (i) exponential dependence for weak bonding (nonwetting liquid) and (ii) power law dependence for strong bonding (wetting liquid). The identification of the two regimes of the Kapitza resistance has profound implications for understanding and designing the thermal properties of nanocomposite materials. (C) 2003 American Institute of Physics.},
637 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
638 Author = {Xue, L and Keblinski, P and Phillpot, SR and Choi, SUS and Eastman, JA},
639 Date = {JAN 1 2003},
640 Date-Added = {2012-12-17 16:53:22 +0000},
641 Date-Modified = {2012-12-17 16:53:22 +0000},
642 Doi = {DOI 10.1063/1.1525806},
643 Journal = jcp,
644 Pages = {337-339},
645 Publisher = {AMER INST PHYSICS},
646 Timescited = {19},
647 Title = {Two regimes of thermal resistance at a liquid-solid interface},
648 Volume = {118},
649 Year = {2003},
650 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1525806}}
651
652 @article{Xue:2004oa,
653 Abstract = {Using non-equilibrium molecular dynamics simulations in which a temperature gradient is imposed, we study how the ordering of the liquid at the liquid-solid interface affects the interfacial thermal resistance. Our simulations of a simple monoatomic liquid show no effect on the thermal transport either normal to the surface or parallel to the surface. Even for of a liquid that is highly confined between two solids, we find no effect on thermal conductivity. This contrasts with well-known significant effect of confinement on the viscoelastic response. Our findings suggest that the experimentally observed large enhancement of thermal conductivity in suspensions of solid nanosized particles (nanofluids) can not be explained by altered thermal transport properties of the layered liquid. (C) 2004 Elsevier Ltd. All rights reserved.},
654 Address = {THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND},
655 Author = {Xue, L and Keblinski, P and Phillpot, SR and Choi, SUS and Eastman, JA},
656 Date = {SEP 2004},
657 Date-Added = {2012-12-17 16:53:22 +0000},
658 Date-Modified = {2012-12-17 16:53:22 +0000},
659 Doi = {DOI 10.1016/ijheatmasstransfer.2004.05.016},
660 Journal = {International Journal of Heat and Mass Transfer},
661 Keywords = {interfacial thermal resistance; liquid-solid interface; molecular dynamics simulations; nanofluids},
662 Pages = {4277-4284},
663 Publisher = {PERGAMON-ELSEVIER SCIENCE LTD},
664 Timescited = {29},
665 Title = {Effect of liquid layering at the liquid-solid interface on thermal transport},
666 Volume = {47},
667 Year = {2004},
668 Bdsk-Url-1 = {http://dx.doi.org/10.1016/ijheatmasstransfer.2004.05.016}}
669
670 @article{Lee:1999ct,
671 Abstract = {Oxide nanofluids were produced and their thermal conductivities were measured by a transient hot-wire method. The experimental results show that these nanofluids, containing a small amount of nanoparticles, have substantially higher thermal conductivities than the same liquids without nanoparticles. Comparisons between experiments and the Hamilton and Crosser model show that the model can predict the thermal conductivity of nanofluids containing large agglomerated Al2O3 particles. However, the model appears to be inadequate for nanofluids containing CuO particles. This suggests that not only particle shape but size is considered to be dominant in enhancing the thermal conductivity of nanofluids.},
672 Address = {345 E 47TH ST, NEW YORK, NY 10017 USA},
673 Author = {Lee, S and Choi, SUS and Li, S and Eastman, JA},
674 Date = {MAY 1999},
675 Date-Added = {2012-12-17 16:53:15 +0000},
676 Date-Modified = {2012-12-17 16:53:15 +0000},
677 Journal = {Journal of Heat Transfer-Transactions of the Asme},
678 Keywords = {conduction; enhancement; heat transfer; nanoscale; two-phase},
679 Pages = {280-289},
680 Publisher = {ASME-AMER SOC MECHANICAL ENG},
681 Timescited = {183},
682 Title = {Measuring thermal conductivity of fluids containing oxide nanoparticles},
683 Volume = {121},
684 Year = {1999}}
685
686 @article{Keblinski:2002bx,
687 Abstract = {Recent measurements on nanofluids have demonstrated that the thermal conductivity increases with decreasing grain size. However, Such increases cannot be explained by existing theories. We explore four possible explanations for this anomalous increase: Brownian motion of the particles, molecular-level layering of the liquid at the liquid/particle interface, the nature of heat transport in the nanoparticles. and the effects of nanoparticle clustering. We show that the key factors in understanding thermal properties of nanofluids are the ballistic, rather than diffusive, nature of heat transport in the nanoparticles, combined with direct or fluid-mediated clustering effects that provide paths for rapid heat transport. (C) 2001 Elsevier Science Ltd. All rights reserved.},
688 Address = {THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND},
689 Author = {Keblinski, P and Phillpot, SR and Choi, SUS and Eastman, JA},
690 Date = {FEB 2002},
691 Date-Added = {2012-12-17 16:53:06 +0000},
692 Date-Modified = {2012-12-17 16:53:06 +0000},
693 Journal = {International Journal of Heat and Mass Transfer},
694 Keywords = {thermal conductivity; nanofluids; molecular dynamics simulations; ballistic heat transport},
695 Pages = {855-863},
696 Publisher = {PERGAMON-ELSEVIER SCIENCE LTD},
697 Timescited = {161},
698 Title = {Mechanisms of heat flow in suspensions of nano-sized particles (nanofluids)},
699 Volume = {45},
700 Year = {2002}}
701
702 @article{Eastman:2001wb,
703 Abstract = {It is shown that a "nanofluid" consisting of copper nanometer-sized particles dispersed in ethylene glycol has a much higher effective thermal conductivity than either pure ethylene glycol or ethylene glycol containing the same volume fraction of dispersed oxide nanoparticles. The effective thermal conductivity of ethylene glycol is shown to be increased by up to 40\% for a nanofluid consisting of ethylene glycol containing approximately 0.3 vol \% Cu nanoparticles of mean diameter < 10 nm. The results are anomalous based on previous theoretical calculations that had predicted a strong effect of particle shape on effective nanofluid thermal conductivity, but no effect of either particle size or particle thermal conductivity. (C) 2001 American Institute of Physics.},
704 Address = {2 HUNTINGTON QUADRANGLE, STE 1NO1, MELVILLE, NY 11747-4501 USA},
705 Author = {Eastman, JA and Choi, SUS and Li, S and Yu, W and Thompson, LJ},
706 Date = {FEB 5 2001},
707 Date-Added = {2012-12-17 16:52:55 +0000},
708 Date-Modified = {2012-12-17 16:52:55 +0000},
709 Journal = {Applied Physics Letters},
710 Pages = {718-720},
711 Publisher = {AMER INST PHYSICS},
712 Timescited = {246},
713 Title = {Anomalously increased effective thermal conductivities of ethylene glycol-based nanofluids containing copper nanoparticles},
714 Volume = {78},
715 Year = {2001}}
716
717 @article{Eapen:2007th,
718 Abstract = {Transient hot-wire data on thermal conductivity of suspensions of silica and perfluorinated particles show agreement with the mean-field theory of Maxwell but not with the recently postulated microconvection mechanism. The influence of interfacial thermal resistance, convective effects at microscales, and the possibility of thermal conductivity enhancements beyond the Maxwell limit are discussed.},
719 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
720 Author = {Eapen, Jacob and Williams, Wesley C. and Buongiorno, Jacopo and Hu, Lin-Wen and Yip, Sidney and Rusconi, Roberto and Piazza, Roberto},
721 Date = {AUG 31 2007},
722 Date-Added = {2012-12-17 16:52:46 +0000},
723 Date-Modified = {2012-12-17 16:52:46 +0000},
724 Doi = {ARTN 095901},
725 Journal = prl,
726 Publisher = {AMER PHYSICAL SOC},
727 Timescited = {8},
728 Title = {Mean-field versus microconvection effects in nanofluid thermal conduction},
729 Volume = {99},
730 Year = {2007},
731 Bdsk-Url-1 = {http://dx.doi.org/095901}}
732
733 @article{Plech:2005kx,
734 Abstract = {The transient structural response of laser excited gold nanoparticle sols has been recorded by pulsed X-ray scattering. Time resolved wide angle and small angle scattering (SAXS) record the changes in structure both of the nanoparticles and the water environment subsequent to femtosecond laser excitation. Within the first nanosecond after the excitation of the nanoparticles, the water phase shows a signature of compression, induced by a heat-induced evaporation of the water shell close to the heated nanoparticles. The particles themselves undergo a melting transition and are fragmented to Form new clusters in the nanometer range. (C) 2004 Elsevier B.V. All rights reserved.},
735 Author = {Plech, A and Kotaidis, V and Lorenc, M and Wulff, M},
736 Date-Added = {2012-12-17 16:52:34 +0000},
737 Date-Modified = {2012-12-17 16:52:34 +0000},
738 Doi = {DOI 10.1016/j.cplett.2004.11.072},
739 Journal = cpl,
740 Local-Url = {file://localhost/Users/charles/Documents/Papers/sdarticle3.pdf},
741 Pages = {565-569},
742 Title = {Thermal dynamics in laser excited metal nanoparticles},
743 Volume = {401},
744 Year = {2005},
745 Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.cplett.2004.11.072}}
746
747 @article{Wilson:2002uq,
748 Abstract = {We investigate suspensions of 3-10 nm diameter Au, Pt, and AuPd nanoparticles as probes of thermal transport in fluids and determine approximate values for the thermal conductance G of the particle/fluid interfaces. Subpicosecond lambda=770 nm optical pulses from a Ti:sapphire mode-locked laser are used to heat the particles and interrogate the decay of their temperature through time-resolved changes in optical absorption. The thermal decay of alkanethiol-terminated Au nanoparticles in toluene is partially obscured by other effects; we set a lower limit G>20 MW m(-2)K(-1). The thermal decay of citrate-stabilized Pt nanoparticles in water gives Gapproximate to130 MW m(-2) K-1. AuPd alloy nanoparticles in toluene and stabilized by alkanethiol termination give Gapproximate to5 MW m(-2) K-1. The measured G are within a factor of 2 of theoretical estimates based on the diffuse-mismatch model.},
749 Author = {Wilson, OM and Hu, XY and Cahill, DG and Braun, PV},
750 Date-Added = {2012-12-17 16:52:22 +0000},
751 Date-Modified = {2012-12-17 16:52:22 +0000},
752 Doi = {ARTN 224301},
753 Journal = {Phys. Rev. B},
754 Local-Url = {file://localhost/Users/charles/Documents/Papers/e2243010.pdf},
755 Title = {Colloidal metal particles as probes of nanoscale thermal transport in fluids},
756 Volume = {66},
757 Year = {2002},
758 Bdsk-Url-1 = {http://dx.doi.org/224301}}
759
760 @article{Mazzaglia:2008to,
761 Abstract = {Amphiphilic cyclodextrins (CDs) modified in the upper rim with thiohexyl groups and in the lower rim with oligoethylene amino (SC6NH2) or oligoethylene hydroxyl groups (SC6OH) can bind gold colloids, yielding Au/CD particles with an average hydrodynamic radius (RH) of 2 and 25 rim in water solution. The systems were investigated by UV-vis, quasi-elastic light scattering, and FTIR-ATR techniques. The concentration of amphiphiles was kept above the concentration of gold colloids to afford complete covering. In the case of SC6NH2, basic conditions (Et3N, pH 11) yield promptly the decoration of Au, which can be stabilized by linkage of CD amino and/or thioether groups. The critical aggregation concentration of SC6NH2 was measured (similar to 4 mu M) by surface tension measurements, pointing out that about 50\% of CDs are present in nonaggregated form. Whereas Au/SC6NH2 colloids were stable in size and morphology for at least one month, the size of the Au/SC6OH system increases remarkably, forming nanoaggregates of 20 and 80 rim in two hours. Under physiological conditions, the gold/amino amphiphiles system can internalize in HeLa cells, as shown by extinction spectra registered on the immobilized cells. The gold delivered by cyclodextrins can induce photothermal damage upon irradiation, doubling the cell mortality with respect to uncovered gold colloids. These findings can open useful perspectives to the application of these self-assembled systems in cancer photothermal therapy.},
762 Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
763 Author = {Mazzaglia, Antonino and Trapani, Mariachiara and Villari, Valentina and Micali, Norberto and Merlo, Francesca Marino and Zaccaria, Daniela and Sciortino, Maria Teresa and Previti, Francesco and Patane, Salvatore and Scolaro, Luigi Monsu},
764 Date = {MAY 1 2008},
765 Date-Added = {2012-12-17 16:52:15 +0000},
766 Date-Modified = {2012-12-17 16:52:15 +0000},
767 Doi = {DOI 10.1021/jp7120033},
768 Journal = jpcc,
769 Pages = {6764-6769},
770 Publisher = {AMER CHEMICAL SOC},
771 Timescited = {0},
772 Title = {Amphiphilic cyclodextrins as capping agents for gold colloids: A spectroscopic investigation with perspectives in photothermal therapy},
773 Volume = {112},
774 Year = {2008},
775 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp7120033}}
776
777 @article{Gnyawali:2008lp,
778 Abstract = {Tissue surface temperature distribution on the treatment site can serve as an indicator for the effectiveness of a photothermal therapy. In this study, both infrared thermography and theoretical simulation were used to determine the surface temperature distribution during laser irradiation of both gel phantom and animal tumors. Selective photothermal interaction was attempted by using intratumoral indocyanine green enhancement and irradiation via a near-infrared laser. An immunoadjuvant was also used to enhance immunological responses during tumor treatment. Monte Carlo method for tissue absorption of light and finite difference method for heat diffusion in tissue were used to simulate the temperature distribution during the selective laser photothermal interaction. An infrared camera was used to capture the thermal images during the laser treatment and the surface temperature was determined. Our findings show that the theoretical and experimental results are in good agreement and that the surface temperature of irradiated tissue can be controlled with appropriate dye and adjuvant enhancement. These results can be used to control the laser tumor treatment parameters and to optimize the treatment outcome. More importantly, when used with immunotherapy as a precursor of immunological responses, the selective photothermal treatment can be guided by the tissue temperature profiles both in the tumor and on the surface.},
779 Address = {TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY},
780 Author = {Gnyawali, Surya C. and Chen, Yicho and Wu, Feng and Bartels, Kenneth E. and Wicksted, James P. and Liu, Hong and Sen, Chandan K. and Chen, Wei R.},
781 Date = {FEB 2008},
782 Date-Added = {2012-12-17 16:52:08 +0000},
783 Date-Modified = {2012-12-17 16:52:08 +0000},
784 Doi = {DOI 10.1007/s11517-007-0251-5},
785 Journal = {Medical \& Biological Engineering \& Computing},
786 Keywords = {infrared thermography; indocyanine green; glycated chitosan; surface temperature; Monte Carlo simulation},
787 Pages = {159-168},
788 Publisher = {SPRINGER HEIDELBERG},
789 Timescited = {0},
790 Title = {Temperature measurement on tissue surface during laser irradiation},
791 Volume = {46},
792 Year = {2008},
793 Bdsk-Url-1 = {http://dx.doi.org/10.1007/s11517-007-0251-5}}
794
795 @article{Petrova:2007ad,
796 Abstract = {This paper describes our recent time-resolved spectroscopy studies of the properties of gold particles at high laser excitation levels. In these experiments, an intense pump laser pulse rapidly heats the particle, creating very high lattice temperatures - up to the melting point of bulk gold. These high temperatures can have dramatic effects on the particle and the surroundings. The lattice temperature created is determined by observing the coherently excited the vibrational modes of the particles. The periods of these modes depend on temperature, thus, they act as an internal thermometer. We have used these experiments to provide values for the threshold temperatures for explosive boiling of the solvent surrounding the particles, and laser induced structural transformations in non-spherical particles. The results of these experiments are relevant to the use of metal nanoparticles in photothermal therapy, where laser induced heating is used to selectively kill cells.},
797 Address = {LEKTORAT MINT, POSTFACH 80 13 60, D-81613 MUNICH, GERMANY},
798 Author = {Petrova, Hristina and Hu, Min and Hartland, Gregory V.},
799 Date = {2007},
800 Date-Added = {2012-12-17 16:52:01 +0000},
801 Date-Modified = {2012-12-17 16:52:01 +0000},
802 Doi = {DOI 10.1524/zpch.2007.221.3.361},
803 Journal = {Zeitschrift Fur Physikalische Chemie-International Journal of Research In Physical Chemistry \& Chemical Physics},
804 Keywords = {metal nanoparticles; phonon modes; photothermal properties; laser-induced heating},
805 Pages = {361-376},
806 Publisher = {OLDENBOURG VERLAG},
807 Timescited = {2},
808 Title = {Photothermal properties of gold nanoparticles},
809 Volume = {221},
810 Year = {2007},
811 Bdsk-Url-1 = {http://dx.doi.org/10.1524/zpch.2007.221.3.361}}
812
813 @article{Jain:2007ux,
814 Abstract = {Noble metal, especially gold (Au) and silver (Ag) nanoparticles exhibit unique and tunable optical properties on account of their surface plasmon resonance (SPR). In this review, we discuss the SPR-enhanced optical properties of noble metal nanoparticles, with an emphasis on the recent advances in the utility of these plasmonic properties in molecular-specific imaging and sensing, photo-diagnostics, and selective photothermal therapy. The strongly enhanced SPR scattering from Au nanoparticles makes them useful as bright optical tags for molecular-specific biological imaging and detection using simple dark-field optical microscopy. On the other hand, the SPR absorption of the nanoparticles has allowed their use in the selective laser photothermal therapy of cancer. We also discuss the sensitivity of the nanoparticle SPR frequency to the local medium dielectric constant, which has been successfully exploited for the optical sensing of chemical and biological analytes. Plasmon coupling between metal nanoparticle pairs is also discussed, which forms the basis for nanoparticle assembly-based biodiagnostics and the plasmon ruler for dynamic measurement of nanoscale distances in biological systems.},
815 Address = {233 SPRING STREET, NEW YORK, NY 10013 USA},
816 Author = {Jain, Prashant K. and Huang, Xiaohua and El-Sayed, Ivan H. and El-Sayad, Mostafa A.},
817 Date = {SEP 2007},
818 Date-Added = {2012-12-17 16:51:52 +0000},
819 Date-Modified = {2012-12-17 16:51:52 +0000},
820 Doi = {DOI 10.1007/s11468-007-9031-1},
821 Journal = {Plasmonics},
822 Keywords = {surface plasmon resonance (SPR); SPR sensing; Mie scattering; metal nanocrystals for biodiagnostics; photothermal therapy; plasmon coupling},
823 Number = {3},
824 Pages = {107-118},
825 Publisher = {SPRINGER},
826 Timescited = {2},
827 Title = {Review of some interesting surface plasmon resonance-enhanced properties of noble metal nanoparticles and their applications to biosystems},
828 Volume = {2},
829 Year = {2007},
830 Bdsk-Url-1 = {http://dx.doi.org/10.1007/s11468-007-9031-1}}
831
832 @techreport{Goddard1998,
833 Author = {Kimura, Y. and Cagin, T. and Goddard III, W.A.},
834 Date-Added = {2012-12-05 22:18:01 +0000},
835 Date-Modified = {2012-12-05 22:18:01 +0000},
836 Institution = {California Institute of Technology},
837 Lastchecked = {January 19, 2011},
838 Number = {003},
839 Title = {The Quantum Sutton-Chen Many Body Potential for Properties of fcc Metals},
840 Url = {http://csdrm.caltech.edu/publications/cit-asci-tr/cit-asci-tr003.pdf},
841 Year = {1998},
842 Bdsk-Url-1 = {http://csdrm.caltech.edu/publications/cit-asci-tr/cit-asci-tr003.pdf}}
843
844 @article{Hase2010,
845 Author = {Yue Zhang and George L. Barnes and Tianying Yan and William L. Hase},
846 Date-Added = {2012-12-05 22:18:01 +0000},
847 Date-Modified = {2012-12-05 22:18:01 +0000},
848 Journal = {Phys. Chem. Chem. Phys.},
849 Keywords = {fcc/hcp, non-equilibrium, thiols},
850 Pages = {4435-4445},
851 Title = {Model non-equilibrium molecular dynamics simulations of heat transfer from a hot gold surface to an alkylthiolate self-assembled monolayer},
852 Volume = {12},
853 Year = {2010}}
854
855 @article{Kuang2010,
856 Author = {Shenyu Kuang and J. Daniel Gezelter},
857 Date-Added = {2012-12-05 22:18:01 +0000},
858 Date-Modified = {2012-12-05 22:18:01 +0000},
859 Journal = {J. Chem. Phys.},
860 Keywords = {NIVS, RNEMD, NIVS-RNEMD},
861 Month = {October},
862 Pages = {164101-1 - 164101-9},
863 Title = {A gentler approach to RNEMD: Nonisotropic velocity scaling for computing thermal conductivity and shear viscosity},
864 Volume = {133},
865 Year = {2010}}
866
867 @article{Kuang2011,
868 Author = {Shenyu Kuang and J. Daniel Gezelter},
869 Date-Added = {2012-12-05 22:18:01 +0000},
870 Date-Modified = {2012-12-05 22:18:01 +0000},
871 Journal = {J. Phys. Chem. C},
872 Keywords = {thiols, RNEMD},
873 Month = {October},
874 Pages = {22475-22483},
875 Title = {Simulating Interfacial Thermal Conductance at Metal-Solvent Interfaces: The Role of Chemical Capping Agents},
876 Volume = {115},
877 Year = {2011}}
878
879 @article{Kuang2012,
880 Author = {Shenyu Kuang and J. Daniel Gezelter},
881 Date-Added = {2012-12-05 22:18:01 +0000},
882 Date-Modified = {2012-12-05 22:18:01 +0000},
883 Journal = {Mol. Phys.},
884 Keywords = {VSS, RNEMD, VSS-RNEMD},
885 Month = {May},
886 Number = {9-10},
887 Pages = {691-701},
888 Title = {Velocity shearing and scaling RNEMD: a minimally perturbing method for simulating temperature and momentum gradients},
889 Volume = {110},
890 Year = {2012}}
891
892 @misc{open_md,
893 Author = {Shenyu Kuang and Joseph Michalka and Kelsey M. Stocker and James Marr and Teng Lin and Charles F. Vardeman II and Christopher J. Fennell and Xiuquan Sun and Chunlei Li and Kyle Daily and Yang Zheng and Matthew A. Meineke and J. Daniel Gezelter},
894 Date-Added = {2012-12-05 22:18:01 +0000},
895 Date-Modified = {2012-12-05 22:18:01 +0000},
896 Howpublished = {http://openmd.net},
897 Keywords = {OpenMD},
898 Lastchecked = {January 18, 2011},
899 Title = {OpenMD, an open source engine for molecular dynamics},
900 Bdsk-Url-1 = {http://openmd.net}}
901
902 @article{doi:10.1080/0026897031000068578,
903 Abstract = { Using equilibrium and non-equilibrium molecular dynamics simulations, we determine the Kapitza resistance (or thermal contact resistance) at a model liquid-solid interface. The Kapitza resistance (or the associated Kapitza length) can reach appreciable values when the liquid does not wet the solid. The analogy with the hydrodynamic slip length is discussed. },
904 Author = {Barrat, Jean-Louis and Chiaruttini, Fran{\c c}ois},
905 Date-Added = {2011-12-13 17:17:05 -0500},
906 Date-Modified = {2011-12-13 17:17:05 -0500},
907 Doi = {10.1080/0026897031000068578},
908 Eprint = {http://tandfprod.literatumonline.com/doi/pdf/10.1080/0026897031000068578},
909 Journal = {Mol. Phys.},
910 Number = {11},
911 Pages = {1605-1610},
912 Title = {Kapitza resistance at the liquid---solid interface},
913 Url = {http://tandfprod.literatumonline.com/doi/abs/10.1080/0026897031000068578},
914 Volume = {101},
915 Year = {2003},
916 Bdsk-Url-1 = {http://tandfprod.literatumonline.com/doi/abs/10.1080/0026897031000068578},
917 Bdsk-Url-2 = {http://dx.doi.org/10.1080/0026897031000068578}}
918
919 @article{Medina2011,
920 Abstract = {Molecular dynamics (MD) simulations are carried out on a system of rigid or flexible water molecules at a series of temperatures between 273 and 368&#xa0;K. Collective transport coefficients, such as shear and bulk viscosities are calculated, and their behavior is systematically investigated as a function of flexibility and temperature. It is found that by including the intramolecular terms in the potential the calculated viscosity values are in overall much better agreement, compared to earlier and recent available experimental data, than those obtained with the rigid SPC/E model. The effect of the intramolecular degrees of freedom on transport properties of liquid water is analyzed and the incorporation of polarizability is discussed for further improvements. To our knowledge the present study constitutes the first compendium of results on viscosities for pure liquid water, including flexible models, that has been assembled.},
921 Author = {J.S. Medina and R. Prosmiti and P. Villarreal and G. Delgado-Barrio and G. Winter and B. Gonz{\'a}lez and J.V. Alem{\'a}n and C. Collado},
922 Date-Added = {2011-12-13 17:08:34 -0500},
923 Date-Modified = {2011-12-13 17:08:49 -0500},
924 Doi = {10.1016/j.chemphys.2011.07.001},
925 Issn = {0301-0104},
926 Journal = {Chemical Physics},
927 Keywords = {Viscosity calculations},
928 Number = {1-3},
929 Pages = {9 - 18},
930 Title = {Molecular dynamics simulations of rigid and flexible water models: Temperature dependence of viscosity},
931 Url = {http://www.sciencedirect.com/science/article/pii/S0301010411002813},
932 Volume = {388},
933 Year = {2011},
934 Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0301010411002813},
935 Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.chemphys.2011.07.001}}
936
937 @book{WagnerKruse,
938 Address = {Berlin},
939 Author = {W. Wagner and A. Kruse},
940 Date-Added = {2011-12-13 14:57:08 -0500},
941 Date-Modified = {2011-12-13 14:57:08 -0500},
942 Publisher = {Springer-Verlag},
943 Title = {Properties of Water and Steam, the Industrial Standard IAPWS-IF97 for the Thermodynamic Properties and Supplementary Equations for Other Properties},
944 Year = {1998}}
945
946 @article{garde:PhysRevLett2009,
947 Author = {Shenogina, Natalia and Godawat, Rahul and Keblinski, Pawel and Garde, Shekhar},
948 Date-Added = {2011-12-13 12:48:51 -0500},
949 Date-Modified = {2011-12-13 12:48:51 -0500},
950 Doi = {10.1103/PhysRevLett.102.156101},
951 Journal = {Phys. Rev. Lett.},
952 Month = {Apr},
953 Number = {15},
954 Numpages = {4},
955 Pages = {156101},
956 Publisher = {American Physical Society},
957 Title = {How Wetting and Adhesion Affect Thermal Conductance of a Range of Hydrophobic to Hydrophilic Aqueous Interfaces},
958 Volume = {102},
959 Year = {2009},
960 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevLett.102.156101}}
961
962 @article{garde:nl2005,
963 Abstract = { Systems with nanoscopic features contain a high density of interfaces. Thermal transport in such systems can be governed by the resistance to heat transfer, the Kapitza resistance (RK), at the interface. Although soft interfaces, such as those between immiscible liquids or between a biomolecule and solvent, are ubiquitous, few studies of thermal transport at such interfaces have been reported. Here we characterize the interfacial conductance, 1/RK, of soft interfaces as a function of molecular architecture, chemistry, and the strength of cross-interfacial intermolecular interactions through detailed molecular dynamics simulations. The conductance of various interfaces studied here, for example, water−organic liquid, water−surfactant, surfactant−organic liquid, is relatively high (in the range of 65−370 MW/m2 K) compared to that for solid−liquid interfaces (∼10 MW/m2 K). Interestingly, the dependence of interfacial conductance on the chemistry and molecular architecture cannot be explained solely in terms of either bulk property mismatch or the strength of intermolecular attraction between the two phases. The observed trends can be attributed to a combination of strong cross-interface intermolecular interactions and good thermal coupling via soft vibration modes present at liquid−liquid interfaces. },
964 Author = {Patel, Harshit A. and Garde, Shekhar and Keblinski, Pawel},
965 Date-Added = {2011-12-13 12:48:51 -0500},
966 Date-Modified = {2011-12-13 12:48:51 -0500},
967 Doi = {10.1021/nl051526q},
968 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/nl051526q},
969 Journal = {Nano Lett.},
970 Note = {PMID: 16277458},
971 Number = {11},
972 Pages = {2225-2231},
973 Title = {Thermal Resistance of Nanoscopic Liquid−Liquid Interfaces:  Dependence on Chemistry and Molecular Architecture},
974 Url = {http://pubs.acs.org/doi/abs/10.1021/nl051526q},
975 Volume = {5},
976 Year = {2005},
977 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/nl051526q},
978 Bdsk-Url-2 = {http://dx.doi.org/10.1021/nl051526q}}
979
980 @article{melchionna93,
981 Author = {S. Melchionna and G. Ciccotti and B.~L. Holian},
982 Date-Added = {2011-12-12 17:52:15 -0500},
983 Date-Modified = {2011-12-12 17:52:15 -0500},
984 Journal = {Mol. Phys.},
985 Pages = {533-544},
986 Title = {Hoover {\sc npt} dynamics for systems varying in shape and size},
987 Volume = 78,
988 Year = 1993}
989
990 @article{TraPPE-UA.thiols,
991 Author = {Lubna, Nusrat and Kamath, Ganesh and Potoff, Jeffrey J. and Rai, Neeraj and Siepmann, J. Ilja},
992 Date-Added = {2011-12-07 15:06:12 -0500},
993 Date-Modified = {2011-12-07 15:06:12 -0500},
994 Doi = {10.1021/jp0549125},
995 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp0549125},
996 Journal = {J. Phys. Chem. B},
997 Number = {50},
998 Pages = {24100-24107},
999 Title = {Transferable Potentials for Phase Equilibria. 8. United-Atom Description for Thiols, Sulfides, Disulfides, and Thiophene},
1000 Url = {http://pubs.acs.org/doi/abs/10.1021/jp0549125},
1001 Volume = {109},
1002 Year = {2005},
1003 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp0549125},
1004 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp0549125}}
1005
1006 @article{TraPPE-UA.alkylbenzenes,
1007 Author = {Wick, Collin D. and Martin, Marcus G. and Siepmann, J. Ilja},
1008 Date-Added = {2011-12-07 15:06:12 -0500},
1009 Date-Modified = {2011-12-07 15:06:12 -0500},
1010 Doi = {10.1021/jp001044x},
1011 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp001044x},
1012 Journal = {J. Phys. Chem. B},
1013 Number = {33},
1014 Pages = {8008-8016},
1015 Title = {Transferable Potentials for Phase Equilibria. 4. United-Atom Description of Linear and Branched Alkenes and Alkylbenzenes},
1016 Url = {http://pubs.acs.org/doi/abs/10.1021/jp001044x},
1017 Volume = {104},
1018 Year = {2000},
1019 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp001044x},
1020 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp001044x}}
1021
1022 @article{TraPPE-UA.alkanes,
1023 Author = {Martin, Marcus G. and Siepmann, J. Ilja},
1024 Date-Added = {2011-12-07 15:06:12 -0500},
1025 Date-Modified = {2011-12-07 15:06:12 -0500},
1026 Doi = {10.1021/jp972543+},
1027 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp972543%2B},
1028 Journal = {J. Phys. Chem. B},
1029 Number = {14},
1030 Pages = {2569-2577},
1031 Title = {Transferable Potentials for Phase Equilibria. 1. United-Atom Description of n-Alkanes},
1032 Url = {http://pubs.acs.org/doi/abs/10.1021/jp972543%2B},
1033 Volume = {102},
1034 Year = {1998},
1035 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp972543+},
1036 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp972543+},
1037 Bdsk-Url-3 = {http://pubs.acs.org/doi/abs/10.1021/jp972543%2B}}
1038
1039 @article{ISI:000167766600035,
1040 Abstract = {Molecular dynamics simulations are used to
1041 investigate the separation of water films adjacent
1042 to a hot metal surface. The simulations clearly show
1043 that the water layers nearest the surface overheat
1044 and undergo explosive boiling. For thick films, the
1045 expansion of the vaporized molecules near the
1046 surface forces the outer water layers to move away
1047 from the surface. These results are of interest for
1048 mass spectrometry of biological molecules, steam
1049 cleaning of surfaces, and medical procedures.},
1050 Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
1051 Affiliation = {Garrison, BJ (Reprint Author), Penn State Univ, Dept Chem, University Pk, PA 16802 USA. Penn State Univ, Dept Chem, University Pk, PA 16802 USA. Penn State Univ, Inst Mat Res, University Pk, PA 16802 USA. Univ Virginia, Dept Mat Sci \& Engn, Charlottesville, VA 22903 USA.},
1052 Author = {Dou, YS and Zhigilei, LV and Winograd, N and Garrison, BJ},
1053 Date-Added = {2011-12-07 15:02:32 -0500},
1054 Date-Modified = {2011-12-07 15:02:32 -0500},
1055 Doc-Delivery-Number = {416ED},
1056 Issn = {1089-5639},
1057 Journal = {J. Phys. Chem. A},
1058 Journal-Iso = {J. Phys. Chem. A},
1059 Keywords-Plus = {MOLECULAR-DYNAMICS SIMULATIONS; ASSISTED LASER-DESORPTION; FROZEN AQUEOUS-SOLUTIONS; COMPUTER-SIMULATION; ORGANIC-SOLIDS; VELOCITY DISTRIBUTIONS; PARTICLE BOMBARDMENT; MASS-SPECTROMETRY; PHASE EXPLOSION; LIQUID WATER},
1060 Language = {English},
1061 Month = {MAR 29},
1062 Number = {12},
1063 Number-Of-Cited-References = {65},
1064 Pages = {2748-2755},
1065 Publisher = {AMER CHEMICAL SOC},
1066 Subject-Category = {Chemistry, Physical; Physics, Atomic, Molecular \& Chemical},
1067 Times-Cited = {66},
1068 Title = {Explosive boiling of water films adjacent to heated surfaces: A microscopic description},
1069 Type = {Article},
1070 Unique-Id = {ISI:000167766600035},
1071 Volume = {105},
1072 Year = {2001}}
1073
1074 @article{Chen90,
1075 Author = {A.~P. Sutton and J. Chen},
1076 Date-Added = {2011-12-07 15:01:59 -0500},
1077 Date-Modified = {2011-12-07 15:01:59 -0500},
1078 Journal = {Philos. Mag. Lett.},
1079 Pages = {139-146},
1080 Title = {Long-Range Finnis Sinclair Potentials},
1081 Volume = 61,
1082 Year = {1990}}
1083
1084 @article{PhysRevB.59.3527,
1085 Author = {Qi, Yue and \c{C}a\v{g}in, Tahir and Kimura, Yoshitaka and {Goddard III}, William A.},
1086 Date-Added = {2011-12-07 15:01:36 -0500},
1087 Date-Modified = {2011-12-07 15:01:36 -0500},
1088 Doi = {10.1103/PhysRevB.59.3527},
1089 Journal = {Phys. Rev. B},
1090 Local-Url = {file://localhost/Users/charles/Documents/Papers/Qi/1999.pdf},
1091 Month = {Feb},
1092 Number = {5},
1093 Numpages = {6},
1094 Pages = {3527-3533},
1095 Publisher = {American Physical Society},
1096 Title = {Molecular-dynamics simulations of glass formation and crystallization in binary liquid metals:\quad{}{C}u-{A}g and {C}u-{N}i},
1097 Volume = {59},
1098 Year = {1999},
1099 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.59.3527}}
1100
1101 @article{Bedrov:2000,
1102 Abstract = {We have applied a new nonequilibrium molecular
1103 dynamics (NEMD) method {[}F. Muller-Plathe,
1104 J. Chem. Phys. 106, 6082 (1997)] previously applied
1105 to monatomic Lennard-Jones fluids in the
1106 determination of the thermal conductivity of
1107 molecular fluids. The method was modified in order
1108 to be applicable to systems with holonomic
1109 constraints. Because the method involves imposing a
1110 known heat flux it is particularly attractive for
1111 systems involving long-range and many-body
1112 interactions where calculation of the microscopic
1113 heat flux is difficult. The predicted thermal
1114 conductivities of liquid n-butane and water using
1115 the imposed-flux NEMD method were found to be in a
1116 good agreement with previous simulations and
1117 experiment. (C) 2000 American Institute of
1118 Physics. {[}S0021-9606(00)50841-1].},
1119 Address = {2 HUNTINGTON QUADRANGLE, STE 1NO1, MELVILLE, NY 11747-4501 USA},
1120 Affiliation = {Bedrov, D (Reprint Author), Univ Utah, Dept Chem \& Fuels Engn, 122 S Cent Campus Dr,Rm 304, Salt Lake City, UT 84112 USA. Univ Utah, Dept Chem \& Fuels Engn, Salt Lake City, UT 84112 USA. Univ Utah, Dept Mat Sci \& Engn, Salt Lake City, UT 84112 USA.},
1121 Author = {Bedrov, D and Smith, GD},
1122 Date-Added = {2011-12-07 15:00:27 -0500},
1123 Date-Modified = {2011-12-07 15:00:27 -0500},
1124 Doc-Delivery-Number = {369BF},
1125 Issn = {0021-9606},
1126 Journal = {J. Chem. Phys.},
1127 Journal-Iso = {J. Chem. Phys.},
1128 Keywords-Plus = {EFFECTIVE PAIR POTENTIALS; TRANSPORT-PROPERTIES; CANONICAL ENSEMBLE; NORMAL-BUTANE; ALGORITHMS; SHAKE; WATER},
1129 Language = {English},
1130 Month = {NOV 8},
1131 Number = {18},
1132 Number-Of-Cited-References = {26},
1133 Pages = {8080-8084},
1134 Publisher = {AMER INST PHYSICS},
1135 Read = {1},
1136 Subject-Category = {Physics, Atomic, Molecular \& Chemical},
1137 Times-Cited = {23},
1138 Title = {Thermal conductivity of molecular fluids from molecular dynamics simulations: Application of a new imposed-flux method},
1139 Type = {Article},
1140 Unique-Id = {ISI:000090151400044},
1141 Volume = {113},
1142 Year = {2000}}
1143
1144 @article{10.1063/1.3330544,
1145 Author = {Miguel Angel Gonz{\'a}lez and Jos{\'e} L. F. Abascal},
1146 Coden = {JCPSA6},
1147 Date-Added = {2011-12-07 14:59:20 -0500},
1148 Date-Modified = {2011-12-15 13:10:11 -0500},
1149 Doi = {DOI:10.1063/1.3330544},
1150 Eissn = {10897690},
1151 Issn = {00219606},
1152 Journal = {J. Chem. Phys.},
1153 Keywords = {shear strength; viscosity;},
1154 Number = {9},
1155 Pages = {096101},
1156 Publisher = {AIP},
1157 Title = {The shear viscosity of rigid water models},
1158 Url = {http://dx.doi.org/doi/10.1063/1.3330544},
1159 Volume = {132},
1160 Year = {2010},
1161 Bdsk-Url-1 = {http://dx.doi.org/doi/10.1063/1.3330544},
1162 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.3330544}}
1163
1164 @article{doi:10.1021/jp048434u,
1165 Abstract = { The different possible proton-ordered structures of ice Ih for an orthorombic unit cell with 8 water molecules were derived. The number of unique structures was found to be 16. The crystallographic coordinates of these are reported. The energetics of the different polymorphs were investigated by quantum-mechanical density-functional theory calculations and for comparison by molecular-mechanics analytical potential models. The polymorphs were found to be close in energy, i.e., within approximately 0.25 kcal/mol H2O, on the basis of the quantum-chemical DFT methods. At 277 K, the different energy levels are about evenly populated, but at a lower temperature, a transition to an ordered form is expected. This form was found to agree with the ice phase XI. The difference in lattice energies among the polymorphs was rationalized in terms of structural characteristics. The most important parameters to determine the lattice energies were found to be the distributions of water dimer H-bonded pair conformations, in an intricate manner. },
1166 Author = {Hirsch, Tomas K. and Ojam{\"a}e, Lars},
1167 Date-Added = {2011-12-07 14:38:30 -0500},
1168 Date-Modified = {2011-12-07 14:38:30 -0500},
1169 Doi = {10.1021/jp048434u},
1170 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp048434u},
1171 Journal = {J. Phys. Chem. B},
1172 Number = {40},
1173 Pages = {15856-15864},
1174 Title = {Quantum-Chemical and Force-Field Investigations of Ice Ih:  Computation of Proton-Ordered Structures and Prediction of Their Lattice Energies},
1175 Url = {http://pubs.acs.org/doi/abs/10.1021/jp048434u},
1176 Volume = {108},
1177 Year = {2004},
1178 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp048434u},
1179 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp048434u}}
1180
1181 @article{Meineke:2005gd,
1182 Abstract = {OOPSE is a new molecular dynamics simulation program
1183 that is capable of efficiently integrating equations
1184 of motion for atom types with orientational degrees
1185 of freedom (e.g. #sticky# atoms and point
1186 dipoles). Transition metals can also be simulated
1187 using the embedded atom method (EAM) potential
1188 included in the code. Parallel simulations are
1189 carried out using the force-based decomposition
1190 method. Simulations are specified using a very
1191 simple C-based meta-data language. A number of
1192 advanced integrators are included, and the basic
1193 integrator for orientational dynamics provides
1194 substantial improvements over older quaternion-based
1195 schemes.},
1196 Address = {111 RIVER ST, HOBOKEN, NJ 07030 USA},
1197 Author = {Meineke, M. A. and Vardeman, C. F. and Lin, T and Fennell, CJ and Gezelter, J. D.},
1198 Date-Added = {2011-12-07 13:33:04 -0500},
1199 Date-Modified = {2011-12-07 13:33:04 -0500},
1200 Doi = {DOI 10.1002/jcc.20161},
1201 Isi = {000226558200006},
1202 Isi-Recid = {142688207},
1203 Isi-Ref-Recids = {67885400 50663994 64190493 93668415 46699855 89992422 57614458 49016001 61447131 111114169 68770425 52728075 102422498 66381878 32391149 134477335 53221357 9929643 59492217 69681001 99223832 142688208 94600872 91658572 54857943 117365867 69323123 49588888 109970172 101670714 142688209 121603296 94652379 96449138 99938010 112825758 114905670 86802042 121339042 104794914 82674909 72096791 93668384 90513335 142688210 23060767 63731466 109033408 76303716 31384453 97861662 71842426 130707771 125809946 66381889 99676497},
1204 Journal = {J. Comput. Chem.},
1205 Keywords = {OOPSE; molecular dynamics},
1206 Month = feb,
1207 Number = {3},
1208 Pages = {252-271},
1209 Publisher = {JOHN WILEY \& SONS INC},
1210 Times-Cited = {9},
1211 Title = {OOPSE: An object-oriented parallel simulation engine for molecular dynamics},
1212 Volume = {26},
1213 Year = {2005},
1214 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000226558200006},
1215 Bdsk-Url-2 = {http://dx.doi.org/10.1002/jcc.20161}}
1216
1217 @article{hoover85,
1218 Author = {W.~G. Hoover},
1219 Date-Added = {2011-12-06 14:23:41 -0500},
1220 Date-Modified = {2011-12-06 14:23:41 -0500},
1221 Journal = {Phys. Rev. A},
1222 Pages = 1695,
1223 Title = {Canonical dynamics: Equilibrium phase-space distributions},
1224 Volume = 31,
1225 Year = 1985}
1226
1227 @article{Maginn:2010,
1228 Abstract = {The reverse nonequilibrium molecular dynamics
1229 (RNEMD) method calculates the shear viscosity of a
1230 fluid by imposing a nonphysical exchange of momentum
1231 and measuring the resulting shear velocity
1232 gradient. In this study we investigate the range of
1233 momentum flux values over which RNEMD yields usable
1234 (linear) velocity gradients. We find that nonlinear
1235 velocity profiles result primarily from gradients in
1236 fluid temperature and density. The temperature
1237 gradient results from conversion of heat into bulk
1238 kinetic energy, which is transformed back into heat
1239 elsewhere via viscous heating. An expression is
1240 derived to predict the temperature profile resulting
1241 from a specified momentum flux for a given fluid and
1242 simulation cell. Although primarily bounded above,
1243 we also describe milder low-flux limitations. RNEMD
1244 results for a Lennard-Jones fluid agree with
1245 equilibrium molecular dynamics and conventional
1246 nonequilibrium molecular dynamics calculations at
1247 low shear, but RNEMD underpredicts viscosity
1248 relative to conventional NEMD at high shear.},
1249 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
1250 Affiliation = {Tenney, CM (Reprint Author), Univ Notre Dame, Dept Chem \& Biomol Engn, 182 Fitzpatrick Hall, Notre Dame, IN 46556 USA. {[}Tenney, Craig M.; Maginn, Edward J.] Univ Notre Dame, Dept Chem \& Biomol Engn, Notre Dame, IN 46556 USA.},
1251 Article-Number = {014103},
1252 Author = {Tenney, Craig M. and Maginn, Edward J.},
1253 Author-Email = {ed@nd.edu},
1254 Date-Added = {2011-12-05 18:29:08 -0500},
1255 Date-Modified = {2011-12-05 18:29:08 -0500},
1256 Doc-Delivery-Number = {542DQ},
1257 Doi = {10.1063/1.3276454},
1258 Funding-Acknowledgement = {U.S. Department of Energy {[}DE-FG36-08G088020]},
1259 Funding-Text = {Support for this work was provided by the U.S. Department of Energy (Grant No. DE-FG36-08G088020)},
1260 Issn = {0021-9606},
1261 Journal = {J. Chem. Phys.},
1262 Journal-Iso = {J. Chem. Phys.},
1263 Keywords = {Lennard-Jones potential; molecular dynamics method; Navier-Stokes equations; viscosity},
1264 Keywords-Plus = {CURRENT AUTOCORRELATION-FUNCTION; IONIC LIQUID; SIMULATIONS; TEMPERATURE},
1265 Language = {English},
1266 Month = {JAN 7},
1267 Number = {1},
1268 Number-Of-Cited-References = {20},
1269 Pages = {014103},
1270 Publisher = {AMER INST PHYSICS},
1271 Subject-Category = {Physics, Atomic, Molecular \& Chemical},
1272 Times-Cited = {0},
1273 Title = {Limitations and recommendations for the calculation of shear viscosity using reverse nonequilibrium molecular dynamics},
1274 Type = {Article},
1275 Unique-Id = {ISI:000273472300004},
1276 Volume = {132},
1277 Year = {2010},
1278 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.3276454}}
1279
1280 @article{ISI:000080382700030,
1281 Abstract = {A nonequilibrium method for calculating the shear
1282 viscosity is presented. It reverses the
1283 cause-and-effect picture customarily used in
1284 nonequilibrium molecular dynamics: the effect, the
1285 momentum flux or stress, is imposed, whereas the
1286 cause, the velocity gradient or shear rate, is
1287 obtained from the simulation. It differs from other
1288 Norton-ensemble methods by the way in which the
1289 steady-state momentum flux is maintained. This
1290 method involves a simple exchange of particle
1291 momenta, which is easy to implement. Moreover, it
1292 can be made to conserve the total energy as well as
1293 the total linear momentum, so no coupling to an
1294 external temperature bath is needed. The resulting
1295 raw data, the velocity profile, is a robust and
1296 rapidly converging property. The method is tested on
1297 the Lennard-Jones fluid near its triple point. It
1298 yields a viscosity of 3.2-3.3, in Lennard-Jones
1299 reduced units, in agreement with literature
1300 results. {[}S1063-651X(99)03105-0].},
1301 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
1302 Affiliation = {Muller-Plathe, F (Reprint Author), Max Planck Inst Polymerforsch, Ackermannweg 10, D-55128 Mainz, Germany. Max Planck Inst Polymerforsch, D-55128 Mainz, Germany.},
1303 Author = {M\"{u}ller-Plathe, F},
1304 Date-Added = {2011-12-05 18:18:37 -0500},
1305 Date-Modified = {2011-12-05 18:18:37 -0500},
1306 Doc-Delivery-Number = {197TX},
1307 Issn = {1063-651X},
1308 Journal = {Phys. Rev. E},
1309 Journal-Iso = {Phys. Rev. E},
1310 Language = {English},
1311 Month = {MAY},
1312 Number = {5, Part A},
1313 Number-Of-Cited-References = {17},
1314 Pages = {4894-4898},
1315 Publisher = {AMERICAN PHYSICAL SOC},
1316 Subject-Category = {Physics, Fluids \& Plasmas; Physics, Mathematical},
1317 Times-Cited = {57},
1318 Title = {Reversing the perturbation in nonequilibrium molecular dynamics: An easy way to calculate the shear viscosity of fluids},
1319 Type = {Article},
1320 Unique-Id = {ISI:000080382700030},
1321 Volume = {59},
1322 Year = {1999}}
1323
1324 @article{MullerPlathe:1997xw,
1325 Abstract = {A nonequilibrium molecular dynamics method for
1326 calculating the thermal conductivity is
1327 presented. It reverses the usual cause and effect
1328 picture. The ''effect,'' the heat flux, is imposed
1329 on the system and the ''cause,'' the temperature
1330 gradient is obtained from the simulation. Besides
1331 being very simple to implement, the scheme offers
1332 several advantages such as compatibility with
1333 periodic boundary conditions, conservation of total
1334 energy and total linear momentum, and the sampling
1335 of a rapidly converging quantity (temperature
1336 gradient) rather than a slowly converging one (heat
1337 flux). The scheme is tested on the Lennard-Jones
1338 fluid. (C) 1997 American Institute of Physics.},
1339 Address = {WOODBURY},
1340 Author = {M\"{u}ller-Plathe, F.},
1341 Cited-Reference-Count = {13},
1342 Date = {APR 8},
1343 Date-Added = {2011-12-05 18:18:37 -0500},
1344 Date-Modified = {2011-12-05 18:18:37 -0500},
1345 Document-Type = {Article},
1346 Isi = {ISI:A1997WR62000032},
1347 Isi-Document-Delivery-Number = {WR620},
1348 Iso-Source-Abbreviation = {J. Chem. Phys.},
1349 Issn = {0021-9606},
1350 Journal = {J. Chem. Phys.},
1351 Language = {English},
1352 Month = {Apr},
1353 Number = {14},
1354 Page-Count = {4},
1355 Pages = {6082--6085},
1356 Publication-Type = {J},
1357 Publisher = {AMER INST PHYSICS},
1358 Publisher-Address = {CIRCULATION FULFILLMENT DIV, 500 SUNNYSIDE BLVD, WOODBURY, NY 11797-2999},
1359 Reprint-Address = {MullerPlathe, F, MAX PLANCK INST POLYMER RES, D-55128 MAINZ, GERMANY.},
1360 Source = {J CHEM PHYS},
1361 Subject-Category = {Physics, Atomic, Molecular & Chemical},
1362 Times-Cited = {106},
1363 Title = {A simple nonequilibrium molecular dynamics method for calculating the thermal conductivity},
1364 Volume = {106},
1365 Year = {1997}}
1366
1367 @article{priezjev:204704,
1368 Author = {Nikolai V. Priezjev},
1369 Date-Added = {2011-11-28 14:39:18 -0500},
1370 Date-Modified = {2011-11-28 14:39:18 -0500},
1371 Doi = {10.1063/1.3663384},
1372 Eid = {204704},
1373 Journal = {J. Chem. Phys.},
1374 Keywords = {channel flow; diffusion; flow simulation; hydrodynamics; molecular dynamics method; pattern formation; random processes; shear flow; slip flow; wetting},
1375 Number = {20},
1376 Numpages = {9},
1377 Pages = {204704},
1378 Publisher = {AIP},
1379 Title = {Molecular diffusion and slip boundary conditions at smooth surfaces with periodic and random nanoscale textures},
1380 Url = {http://link.aip.org/link/?JCP/135/204704/1},
1381 Volume = {135},
1382 Year = {2011},
1383 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/135/204704/1},
1384 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.3663384}}
1385
1386 @article{bryk:10258,
1387 Author = {Taras Bryk and A. D. J. Haymet},
1388 Date-Added = {2011-11-22 17:06:35 -0500},
1389 Date-Modified = {2011-11-22 17:06:35 -0500},
1390 Doi = {10.1063/1.1519538},
1391 Journal = {J. Chem. Phys.},
1392 Keywords = {liquid structure; molecular dynamics method; water; ice; interface structure},
1393 Number = {22},
1394 Pages = {10258-10268},
1395 Publisher = {AIP},
1396 Title = {Ice 1h/water interface of the SPC/E model: Molecular dynamics simulations of the equilibrium basal and prism interfaces},
1397 Url = {http://link.aip.org/link/?JCP/117/10258/1},
1398 Volume = {117},
1399 Year = {2002},
1400 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/117/10258/1},
1401 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1519538}}
1402
1403 @article{kuang:164101,
1404 Author = {Shenyu Kuang and J. Daniel Gezelter},
1405 Date-Added = {2011-11-18 15:32:23 -0500},
1406 Date-Modified = {2011-11-18 15:32:23 -0500},
1407 Doi = {10.1063/1.3499947},
1408 Eid = {164101},
1409 Journal = {J. Chem. Phys.},
1410 Keywords = {linear momentum; molecular dynamics method; thermal conductivity; total energy; viscosity},
1411 Number = {16},
1412 Numpages = {9},
1413 Pages = {164101},
1414 Publisher = {AIP},
1415 Title = {A gentler approach to RNEMD: Nonisotropic velocity scaling for computing thermal conductivity and shear viscosity},
1416 Url = {http://link.aip.org/link/?JCP/133/164101/1},
1417 Volume = {133},
1418 Year = {2010},
1419 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/133/164101/1},
1420 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.3499947}}
1421
1422 @misc{openmd,
1423 Author = {J. Daniel Gezelter and Shenyu Kuang and James Marr and Kelsey Stocker and Chunlei Li and Charles F. Vardeman and Teng Lin and Christopher J. Fennell and Xiuquan Sun and Kyle Daily and Yang Zheng and Matthew A. Meineke},
1424 Date-Added = {2011-11-18 15:32:23 -0500},
1425 Date-Modified = {2011-11-18 15:32:23 -0500},
1426 Howpublished = {Available at {\tt http://openmd.net}},
1427 Title = {{OpenMD, an open source engine for molecular dynamics}}}
1428
1429 @article{kuang:AuThl,
1430 Author = {Kuang, Shenyu and Gezelter, J. Daniel},
1431 Date-Added = {2011-11-18 13:03:06 -0500},
1432 Date-Modified = {2011-12-05 17:58:01 -0500},
1433 Doi = {10.1021/jp2073478},
1434 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp2073478},
1435 Journal = {J. Phys. Chem. C},
1436 Number = {45},
1437 Pages = {22475-22483},
1438 Title = {Simulating Interfacial Thermal Conductance at Metal-Solvent Interfaces: The Role of Chemical Capping Agents},
1439 Url = {http://pubs.acs.org/doi/abs/10.1021/jp2073478},
1440 Volume = {115},
1441 Year = {2011},
1442 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp2073478},
1443 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp2073478}}
1444
1445 @article{10.1063/1.2772547,
1446 Author = {Hideo Kaburaki and Ju Li and Sidney Yip and Hajime Kimizuka},
1447 Coden = {JAPIAU},
1448 Date-Added = {2011-11-01 16:46:32 -0400},
1449 Date-Modified = {2011-11-01 16:46:32 -0400},
1450 Doi = {DOI:10.1063/1.2772547},
1451 Eissn = {10897550},
1452 Issn = {00218979},
1453 Keywords = {argon; Lennard-Jones potential; phonons; thermal conductivity;},
1454 Number = {4},
1455 Pages = {043514},
1456 Publisher = {AIP},
1457 Title = {Dynamical thermal conductivity of argon crystal},
1458 Url = {http://dx.doi.org/10.1063/1.2772547},
1459 Volume = {102},
1460 Year = {2007},
1461 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.2772547}}
1462
1463 @article{PhysRevLett.82.4671,
1464 Author = {Barrat, Jean-Louis and Bocquet, Lyd\'eric},
1465 Date-Added = {2011-11-01 16:44:29 -0400},
1466 Date-Modified = {2011-11-01 16:44:29 -0400},
1467 Doi = {10.1103/PhysRevLett.82.4671},
1468 Issue = {23},
1469 Journal = {Phys. Rev. Lett.},
1470 Month = {Jun},
1471 Pages = {4671--4674},
1472 Publisher = {American Physical Society},
1473 Title = {Large Slip Effect at a Nonwetting Fluid-Solid Interface},
1474 Url = {http://link.aps.org/doi/10.1103/PhysRevLett.82.4671},
1475 Volume = {82},
1476 Year = {1999},
1477 Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevLett.82.4671},
1478 Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevLett.82.4671}}
1479
1480 @article{10.1063/1.1610442,
1481 Author = {J. R. Schmidt and J. L. Skinner},
1482 Coden = {JCPSA6},
1483 Date-Added = {2011-10-13 16:28:43 -0400},
1484 Date-Modified = {2011-12-15 13:11:53 -0500},
1485 Doi = {DOI:10.1063/1.1610442},
1486 Eissn = {10897690},
1487 Issn = {00219606},
1488 Journal = {J. Chem. Phys.},
1489 Keywords = {hydrodynamics; Brownian motion; molecular dynamics method; diffusion;},
1490 Number = {15},
1491 Pages = {8062-8068},
1492 Publisher = {AIP},
1493 Title = {Hydrodynamic boundary conditions, the Stokes?Einstein law, and long-time tails in the Brownian limit},
1494 Url = {http://dx.doi.org/10.1063/1.1610442},
1495 Volume = {119},
1496 Year = {2003},
1497 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1610442}}
1498
1499 @article{10.1063/1.3274802,
1500 Author = {Ting Chen and Berend Smit and Alexis T. Bell},
1501 Coden = {JCPSA6},
1502 Doi = {DOI:10.1063/1.3274802},
1503 Eissn = {10897690},
1504 Issn = {00219606},
1505 Keywords = {fluctuations; molecular dynamics method; viscosity;},
1506 Number = {24},
1507 Pages = {246101},
1508 Publisher = {AIP},
1509 Title = {Are pressure fluctuation-based equilibrium methods really worse than nonequilibrium methods for calculating viscosities?},
1510 Url = {http://dx.doi.org/doi/10.1063/1.3274802},
1511 Volume = {131},
1512 Year = {2009},
1513 Bdsk-Url-1 = {http://dx.doi.org/doi/10.1063/1.3274802},
1514 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.3274802}}