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1 %% This BibTeX bibliography file was created using BibDesk.
2 %% http://bibdesk.sourceforge.net/
3
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5 %% Created for Kelsey Stocker at 2013-02-18 13:04:43 -0500
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8 %% Saved with string encoding Unicode (UTF-8)
9
10
11 @string{acp = {Adv. Chem. Phys.}}
12
13 @string{bj = {Biophys. J.}}
14
15 @string{ccp5 = {CCP5 Information Quarterly}}
16
17 @string{cp = {Chem. Phys.}}
18
19 @string{cpl = {Chem. Phys. Lett.}}
20
21 @string{ea = {Electrochim. Acta}}
22
23 @string{jacs = {J. Am. Chem. Soc.}}
24
25 @string{jbc = {J. Biol. Chem.}}
26
27 @string{jcat = {J. Catalysis}}
28
29 @string{jcc = {J. Comp. Chem.}}
30
31 @string{jcop = {J. Comp. Phys.}}
32
33 @string{jcp = {J. Chem. Phys.}}
34
35 @string{jctc = {J. Chem. Theory Comp.}}
36
37 @string{jmc = {J. Med. Chem.}}
38
39 @string{jml = {J. Mol. Liq.}}
40
41 @string{jmm = {J. Mol. Model.}}
42
43 @string{jpc = {J. Phys. Chem.}}
44
45 @string{jpca = {J. Phys. Chem. A}}
46
47 @string{jpcb = {J. Phys. Chem. B}}
48
49 @string{jpcc = {J. Phys. Chem. C}}
50
51 @string{jpcl = {J. Phys. Chem. Lett.}}
52
53 @string{mp = {Mol. Phys.}}
54
55 @string{pams = {Proc. Am. Math Soc.}}
56
57 @string{pccp = {Phys. Chem. Chem. Phys.}}
58
59 @string{pnas = {Proc. Natl. Acad. Sci. USA}}
60
61 @string{pr = {Phys. Rev.}}
62
63 @string{pra = {Phys. Rev. A}}
64
65 @string{prb = {Phys. Rev. B}}
66
67 @string{pre = {Phys. Rev. E}}
68
69 @string{prl = {Phys. Rev. Lett.}}
70
71 @string{rmp = {Rev. Mod. Phys.}}
72
73 @string{ss = {Surf. Sci.}}
74
75
76 @article{hartland2011,
77 Author = {Hartland, Gregory V.},
78 Date-Added = {2013-02-11 22:54:29 +0000},
79 Date-Modified = {2013-02-18 17:56:29 +0000},
80 Journal = {Chem. Rev.},
81 Pages = {3858-3887},
82 Title = {Optical Studies of Dynamics in Noble Metal Nanostructures},
83 Volume = {11},
84 Year = {2011}}
85
86 @article{hase:2010,
87 Abstract = {Model non-equilibrium molecular dynamics (MD) simulations are presented of heat transfer from a hot Au {111} substrate to an alkylthiolate self-assembled monolayer (H-SAM) to assist in obtaining an atomic-level understanding of experiments by Wang et al. (Z. Wang{,} J. A. Carter{,} A. Lagutchev{,} Y. K. Koh{,} N.-H. Seong{,} D. G. Cahill{,} and D. D. Dlott{,} Science{,} 2007{,} 317{,} 787). Different models are considered to determine how they affect the heat transfer dynamics. They include temperature equilibrated (TE) and temperature gradient (TG) thermostat models for the Au(s) surface{,} and soft and stiff S/Au(s) models for bonding of the S-atoms to the Au(s) surface. A detailed analysis of the non-equilibrium heat transfer at the heterogeneous interface is presented. There is a short time temperature gradient within the top layers of the Au(s) surface. The S-atoms heat rapidly{,} much faster than do the C-atoms in the alkylthiolate chains. A high thermal conductivity in the H-SAM{,} perpendicular to the interface{,} results in nearly identical temperatures for the CH2 and CH3 groups versus time. Thermal-induced disorder is analyzed for the Au(s) substrate{,} the S/Au(s) interface and the H-SAM. Before heat transfer occurs from the hot Au(s) substrate to the H-SAM{,} there is disorder at the S/Au(s) interface and within the alkylthiolate chains arising from heat-induced disorder near the surface of hot Au(s). The short-time rapid heating of the S-atoms enhances this disorder. The increasing disorder of H-SAM chains with time results from both disorder at the Au/S interface and heat transfer to the H-SAM chains.},
88 Author = {Zhang, Yue and Barnes, George L. and Yan, Tianying and Hase, William L.},
89 Date-Added = {2012-12-25 17:47:40 +0000},
90 Date-Modified = {2012-12-25 17:47:40 +0000},
91 Doi = {10.1039/B923858C},
92 Issue = {17},
93 Journal = {Phys. Chem. Chem. Phys.},
94 Pages = {4435-4445},
95 Publisher = {The Royal Society of Chemistry},
96 Title = {Model Non-Equilibrium Molecular Dynamics Simulations of Heat Transfer from a Hot Gold Surface to an Alkylthiolate Self-Assembled Monolayer},
97 Url = {http://dx.doi.org/10.1039/B923858C},
98 Volume = {12},
99 Year = {2010},
100 Bdsk-Url-1 = {http://dx.doi.org/10.1039/B923858C}}
101
102 @article{hase:2011,
103 Abstract = { In a previous article (Phys. Chem. Chem. Phys.2010, 12, 4435), nonequilibrium molecular dynamics (MD) simulations of heat transfer from a hot Au{111} substrate to an alkylthiolate self-assembled monolayer (H-SAM) were presented. The simulations were performed for an H-SAM chain length of eight carbon atoms, and a qualitative agreement with the experiments of Wang et al. (Science2007, 317, 787) was found. Here, simulation results are presented for heat transfer to H-SAM surfaces with carbon chain lengths of 10--20 carbon atoms. Relaxation times for heat transfer are extracted, compared with experiment, and a qualitative agreement is obtained. The same relaxation time is found from either the temperature of the H-SAM or the orientational disorder of the H-SAM versus time. For a simulation model with the Au substrate thermally equilibrated, the relaxation times determined from the simulations are approximately a factor of 4 larger than the experimental values. },
104 Author = {Manikandan, Paranjothy and Carter, Jeffrey A. and Dlott, Dana D. and Hase, William L.},
105 Date-Added = {2012-12-25 17:47:40 +0000},
106 Date-Modified = {2013-02-18 17:57:24 +0000},
107 Doi = {10.1021/jp200672e},
108 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp200672e},
109 Journal = {J. Phys. Chem. C},
110 Number = {19},
111 Pages = {9622-9628},
112 Title = {Effect of Carbon Chain Length on the Dynamics of Heat Transfer at a Gold/Hydrocarbon Interface: Comparison of Simulation with Experiment},
113 Url = {http://pubs.acs.org/doi/abs/10.1021/jp200672e},
114 Volume = {115},
115 Year = {2011},
116 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp200672e},
117 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp200672e}}
118
119 @article{RevModPhys.61.605,
120 Author = {Swartz, E. T. and Pohl, R. O.},
121 Date-Added = {2012-12-21 20:34:12 +0000},
122 Date-Modified = {2012-12-21 20:34:12 +0000},
123 Doi = {10.1103/RevModPhys.61.605},
124 Issue = {3},
125 Journal = {Rev. Mod. Phys.},
126 Month = {Jul},
127 Pages = {605--668},
128 Publisher = {American Physical Society},
129 Title = {Thermal Boundary Resistance},
130 Url = {http://link.aps.org/doi/10.1103/RevModPhys.61.605},
131 Volume = {61},
132 Year = {1989},
133 Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/RevModPhys.61.605},
134 Bdsk-Url-2 = {http://dx.doi.org/10.1103/RevModPhys.61.605}}
135
136 @article{packmol,
137 Author = {L. Mart\'{\i}nez and R. Andrade and Ernesto G. Birgin and Jos{\'e} Mario Mart\'{\i}nez},
138 Bibsource = {DBLP, http://dblp.uni-trier.de},
139 Date-Added = {2011-02-01 15:13:02 -0500},
140 Date-Modified = {2013-02-18 18:01:34 +0000},
141 Ee = {http://dx.doi.org/10.1002/jcc.21224},
142 Journal = {J. Comput. Chem.},
143 Number = {13},
144 Pages = {2157-2164},
145 Title = {PACKMOL: A Package for Building Initial Configurations for Molecular Dynamics Simulations},
146 Volume = {30},
147 Year = {2009}}
148
149 @article{doi:10.1021/jp034405s,
150 Abstract = { We use the universal force field (UFF) developed by Rapp{\'e} et al. (Rapp{\'e}, A. K.; Casewit, C. J.; Colwell, K. S.; Goddard, W. A.; Skiff, W. M. J. Am. Chem. Soc. 1992, 114, 10024) and the specific classical potentials developed from ab initio calculations for Au−benzenedithiol (BDT) molecule interaction to perform molecular dynamics (MD) simulations of a BDT monolayer on an extended Au(111) surface. The simulation system consists of 100 BDT molecules and three rigid Au layers in a simulation box that is rhombic in the plane of the Au surface. A multiple time scale algorithm, the double-reversible reference system propagator algorithm (double RESPA) based on the Nos{\'e}−Hoover dynamics scheme, and the Ewald summation with a boundary correction term for the treatment of long-range electrostatic interactions in a 2-D slab have been incorporated into the simulation technique. We investigate the local bonding properties of Au−BDT contacts and molecular orientation distributions of BDT molecules. These results show that whereas different basis sets from ab initio calculations may generate different local bonding geometric parameters (the bond length, etc.) the packing structures of BDT molecules maintain approximately the same well-ordered herringbone structure with small peak differences in the probability distributions of global geometric parameters. The methodology developed here opens an avenue for classical simulations of a metal−molecule−metal complex in molecular electronics devices. },
151 Author = {Leng, Y. and Keffer, David J. and Cummings, Peter T.},
152 Date-Added = {2012-12-17 18:38:38 +0000},
153 Date-Modified = {2012-12-17 18:38:38 +0000},
154 Doi = {10.1021/jp034405s},
155 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp034405s},
156 Journal = {J. Phys. Chem. B},
157 Number = {43},
158 Pages = {11940-11950},
159 Title = {Structure and Dynamics of a Benzenedithiol Monolayer on a Au(111) Surface},
160 Url = {http://pubs.acs.org/doi/abs/10.1021/jp034405s},
161 Volume = {107},
162 Year = {2003},
163 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp034405s},
164 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp034405s}}
165
166 @article{hautman:4994,
167 Author = {Joseph Hautman and Michael L. Klein},
168 Date-Added = {2012-12-17 18:38:26 +0000},
169 Date-Modified = {2012-12-17 18:38:26 +0000},
170 Doi = {10.1063/1.457621},
171 Journal = {J. Chem. Phys.},
172 Keywords = {MOLECULAR DYNAMICS CALCULATIONS; SIMULATION; MONOLAYERS; THIOLS; ALKYL COMPOUNDS; CHAINS; SURFACE STRUCTURE; GOLD; SUBSTRATES; CHEMISORPTION; SURFACE PROPERTIES},
173 Number = {8},
174 Pages = {4994-5001},
175 Publisher = {AIP},
176 Title = {Simulation of a Monolayer of Alkyl Thiol Chains},
177 Url = {http://link.aip.org/link/?JCP/91/4994/1},
178 Volume = {91},
179 Year = {1989},
180 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/91/4994/1},
181 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.457621}}
182
183 @article{vlugt:cpc2007154,
184 Author = {Philipp Schapotschnikow and Ren{\'e} Pool and Thijs J.H. Vlugt},
185 Date-Added = {2012-12-17 18:38:20 +0000},
186 Date-Modified = {2013-02-18 18:04:43 +0000},
187 Doi = {DOI: 10.1016/j.cpc.2007.02.028},
188 Issn = {0010-4655},
189 Journal = {Comput. Phys. Commun.},
190 Keywords = {Gold nanocrystals},
191 Note = {Proceedings of the Conference on Computational Physics 2006: CCP 2006 - Conference on Computational Physics 2006},
192 Number = {1-2},
193 Pages = {154 - 157},
194 Title = {Selective Adsorption of Alkyl Thiols on Gold in Different Geometries},
195 Url = {http://www.sciencedirect.com/science/article/B6TJ5-4N3WYP0-1/2/66dbe8892f456c230b9b8fcd9c23f456},
196 Volume = {177},
197 Year = {2007},
198 Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/B6TJ5-4N3WYP0-1/2/66dbe8892f456c230b9b8fcd9c23f456},
199 Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.cpc.2007.02.028}}
200
201 @article{landman:1998,
202 Abstract = { Equilibrium structures and thermodynamic properties of dodecanethiol self-assembled monolayers on small (Au140) and larger (Au1289) gold nanocrystallites were investigated with the use of molecular dynamics simulations. Compact passivating monolayers are formed on the (111) and (100) facets of the nanocrystallites, with adsorption site geometries differing from those found on extended flat Au(111) and Au(100) surfaces, as well as with higher packing densities. At lower temperatures the passivating molecules organize into preferentially oriented molecular bundles with the molecules in the bundles aligned approximately parallel to each other. Thermal disordering starts at T ≳200 K, initiating at the boundaries of the bundles and involving generation of intramolecular conformational (gauche) defects which occur first at bonds near the chains' outer terminus and propagate inward toward the underlying gold nanocrystalline surface as the temperature is increased. The disordering process culminates in melting of the molecular bundles, resulting in a uniform orientational distribution of the molecules around the gold nanocrystallites. From the inflection points in the calculated caloric curves, melting temperatures were determined as 280 and 294 K for the monolayers adsorbed on the smaller and larger gold nanocrystallites, respectively. These temperatures are significantly lower than the melting temperature estimated for a self-assembled monolayer of dodecanethiol adsorbed on an extended Au(111) surface. The theoretically predicted disordering mechanisms and melting scenario, resulting in a temperature-broadened transition, support recent experimental investigations. },
203 Author = {Luedtke, W. D. and Landman, Uzi},
204 Date-Added = {2012-12-17 18:38:13 +0000},
205 Date-Modified = {2012-12-17 18:38:13 +0000},
206 Doi = {10.1021/jp981745i},
207 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp981745i},
208 Journal = {J. Phys. Chem. B},
209 Number = {34},
210 Pages = {6566-6572},
211 Title = {Structure and Thermodynamics of Self-Assembled Monolayers on Gold Nanocrystallites},
212 Url = {http://pubs.acs.org/doi/abs/10.1021/jp981745i},
213 Volume = {102},
214 Year = {1998},
215 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp981745i},
216 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp981745i}}
217
218 @article{PhysRevLett.96.186101,
219 Author = {Ge, Zhenbin and Cahill, David G. and Braun, Paul V.},
220 Date-Added = {2012-12-17 17:44:53 +0000},
221 Date-Modified = {2012-12-17 17:44:53 +0000},
222 Doi = {10.1103/PhysRevLett.96.186101},
223 Journal = prl,
224 Month = {May},
225 Number = {18},
226 Numpages = {4},
227 Pages = {186101},
228 Publisher = {American Physical Society},
229 Title = {Thermal Conductance of Hydrophilic and Hydrophobic Interfaces},
230 Volume = {96},
231 Year = {2006},
232 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevLett.96.186101}}
233
234 @article{Larson:2007hw,
235 Abstract = {Nanoparticles which consist of a plasmonic layer and an iron oxide moiety could provide a promising platform for development of multimodal imaging and therapy approaches in future medicine. However, the feasibility of this platform has yet to be fully explored. In this study we demonstrated the use of gold-coated iron oxide hybrid nanoparticles for combined molecular specific MRI/optical imaging and photothermal therapy of cancer cells. The gold layer exhibits a surface plasmon resonance that provides optical contrast due to light scattering in the visible region and also presents a convenient surface for conjugating targeting moieties, while the iron oxide cores give strong T-2 (spin-spin relaxation time) contrast. The strong optical absorption of the plasmonic gold layer also makes these nanoparticles a promising agent for photothermal therapy. We synthesized hybrid nanoparticles which specifically target epidermal growth factor receptor (EGFR), a common biomarker for many epithelial cancers. We demonstrated molecular specific MRI and optical imaging in MDA-MB-468 breast cancer cells. Furthermore, we showed that receptor-mediated aggregation of anti-EGFR hybrid nanoparticles allows selective destruction of highly proliferative cancer cells using a nanosecond pulsed laser at 700 nm wavelength, a significant shift from the peak absorbance of isolated hybrid nanoparticles at 532 nm.},
236 Address = {DIRAC HOUSE, TEMPLE BACK, BRISTOL BS1 6BE, ENGLAND},
237 Author = {Larson, Timothy A. and Bankson, James and Aaron, Jesse and Sokolov, Konstantin},
238 Date = {AUG 15 2007},
239 Date-Added = {2012-12-17 17:44:44 +0000},
240 Date-Modified = {2013-02-18 17:34:30 +0000},
241 Doi = {ARTN 325101},
242 Journal = {Nanotechnology},
243 Pages = {325101},
244 Publisher = {IOP PUBLISHING LTD},
245 Timescited = {5},
246 Title = {Hybrid Plasmonic Magnetic Nanoparticles as Molecular Specific Agents for MRI/Optical Imaging and Photothermal Therapy of Cancer Cells},
247 Volume = {18},
248 Year = {2007},
249 Bdsk-Url-1 = {http://dx.doi.org/325101}}
250
251 @article{Huff:2007ye,
252 Abstract = {Plasmon-resonant gold nanorods, which have large absorption cross sections at near-infrared frequencies, are excellent candidates as multifunctional agents for image-guided therapies based on localized hyperthermia. The controlled modification of the surface chemistry of the nanorods is of critical importance, as issues of cell-specific targeting and nonspecific uptake must be addressed prior to clinical evaluation. Nanorods coated with cetyltrimethylammonium bromide (a cationic surfactant used in nanorod synthesis) are internalized within hours into KB cells by a nonspecific uptake pathway, whereas the careful removal of cetyltrimethylammonium bromide from nanorods functionalized with folate results in their accumulation on the cell surface over the same time interval. In either case, the nanorods render the tumor cells highly susceptible to photothermal damage when irradiated at the nanorods' longitudinal plasmon resonance, generating extensive blebbing of the cell membrane at laser fluences as low as 30 J/cm(2).},
253 Address = {UNITEC HOUSE, 3RD FLOOR, 2 ALBERT PLACE, FINCHLEY CENTRAL, LONDON, N3 1QB, ENGLAND},
254 Author = {Huff, Terry B. and Tong, Ling and Zhao, Yan and Hansen, Matthew N. and Cheng, Ji-Xin and Wei, Alexander},
255 Date = {FEB 2007},
256 Date-Added = {2012-12-17 17:44:36 +0000},
257 Date-Modified = {2012-12-17 17:44:36 +0000},
258 Doi = {DOI 10.2217/17435889.2.1.125},
259 Journal = {Nanomedicine},
260 Keywords = {folate receptor; hyperthermia; imaging; nanorods; nonlinear optical microscopy; plasmon resonance; targeted therapy},
261 Pages = {125-132},
262 Publisher = {FUTURE MEDICINE LTD},
263 Timescited = {13},
264 Title = {Hyperthermic Effects of Gold Nanorods on Tumor Cells},
265 Volume = {2},
266 Year = {2007},
267 Bdsk-Url-1 = {http://dx.doi.org/10.2217/17435889.2.1.125}}
268
269 @article{JiangHao_jp802942v,
270 Abstract = {Abstract: Nonequilibrium molecular dynamics simulations with the nonpolarizable SPC/E (Berendsen et al., J. Phys. Chem. 1987, 91, 6269) and the polarizable COS/G2 (Yu and van Gunsteren, J. Chem. Phys. 2004, 121, 9549) force fields have been employed to calculate the thermal conductivity and other associated properties of methane hydrate over a temperature range from 30 to 260 K. The calculated results are compared to experimental data over this same range. The values of the thermal conductivity calculated with the COS/G2 model are closer to the experimental values than are those calculated with the nonpolarizable SPC/E model. The calculations match the temperature trend in the experimental data at temperatures below 50 K; however, they exhibit a slight decrease in thermal conductivity at higher temperatures in comparison to an opposite trend in the experimental data. The calculated thermal conductivity values are found to be relatively insensitive to the occupancy of the cages except at low (T d 50 K) temperatures, which indicates that the differences between the two lattice structures may have a more dominant role than generally thought in explaining the low thermal conductivity of methane hydrate compared to ice Ih. The introduction of defects into the water lattice is found to cause a reduction in the thermal conductivity but to have a negligible impact on its temperature dependence.},
271 Affiliation = {National Energy Technology Laboratory, U.S. Department of Energy, Post Office Box 10940, Pittsburgh, Pennsylvania 15236, Department of Chemistry and Center for Molecular and Materials Simulations, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, and Parsons Project Services, Inc., South Park, Pennsylvania 15129},
272 Author = {Jiang, Hao and Myshakin, Evgeniy M. and Jordan, Kenneth D. and Warzinski, Robert P.},
273 Date-Added = {2012-12-17 16:57:19 +0000},
274 Date-Modified = {2013-02-18 18:00:08 +0000},
275 Doi = {10.1021/jp802942v},
276 Issn = {1520-6106},
277 Journal = jpcb,
278 Pages = {10207-10216},
279 Title = {Molecular Dynamics Simulations of the Thermal Conductivity of Methane Hydrate},
280 Volume = {112},
281 Year = {2008},
282 Bdsk-Url-1 = {http://pubs3.acs.org/acs/journals/doilookup?in_doi=10.1021/jp802942v}}
283
284 @article{Schelling:2002dp,
285 Author = {Schelling, P. K. and Phillpot, S. R. and Keblinski, P.},
286 Date = {APR 1 2002},
287 Date-Added = {2012-12-17 16:57:10 +0000},
288 Date-Modified = {2012-12-17 16:57:10 +0000},
289 Doi = {10.1103/PhysRevB.65.144306},
290 Isi = {WOS:000174980300055},
291 Issn = {1098-0121},
292 Journal = prb,
293 Month = {Apr},
294 Number = {14},
295 Pages = {144306},
296 Publication-Type = {J},
297 Times-Cited = {288},
298 Title = {Comparison of Atomic-Level Simulation Methods for Computing Thermal Conductivity},
299 Volume = {65},
300 Year = {2002},
301 Z8 = {12},
302 Z9 = {296},
303 Zb = {0},
304 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.65.144306}}
305
306 @article{Evans:2002ai,
307 Author = {Evans, D. J. and Searles, D. J.},
308 Date = {NOV 2002},
309 Date-Added = {2012-12-17 16:56:59 +0000},
310 Date-Modified = {2012-12-17 16:56:59 +0000},
311 Doi = {10.1080/00018730210155133},
312 Isi = {WOS:000179448200001},
313 Issn = {0001-8732},
314 Journal = {Adv. Phys.},
315 Month = {Nov},
316 Number = {7},
317 Pages = {1529--1585},
318 Publication-Type = {J},
319 Times-Cited = {309},
320 Title = {The Fluctuation Theorem},
321 Volume = {51},
322 Year = {2002},
323 Z8 = {3},
324 Z9 = {311},
325 Zb = {9},
326 Bdsk-Url-1 = {http://dx.doi.org/10.1080/00018730210155133}}
327
328 @article{Berthier:2002ij,
329 Author = {Berthier, L. and Barrat, J. L.},
330 Date = {APR 8 2002},
331 Date-Added = {2012-12-17 16:56:47 +0000},
332 Date-Modified = {2012-12-17 16:56:47 +0000},
333 Doi = {10.1063/1.1460862},
334 Isi = {WOS:000174634200036},
335 Issn = {0021-9606},
336 Journal = jcp,
337 Month = {Apr},
338 Number = {14},
339 Pages = {6228--6242},
340 Publication-Type = {J},
341 Times-Cited = {172},
342 Title = {Nonequilibrium Dynamics and Fluctuation-Dissipation Relation in a Sheared Fluid},
343 Volume = {116},
344 Year = {2002},
345 Z8 = {0},
346 Z9 = {172},
347 Zb = {1},
348 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1460862}}
349
350 @article{MAGINN:1993hc,
351 Author = {Maginn, E. J. and Bell, A. T. and Theodorou, D. N.},
352 Date = {APR 22 1993},
353 Date-Added = {2012-12-17 16:56:40 +0000},
354 Date-Modified = {2012-12-21 22:43:10 +0000},
355 Doi = {10.1021/j100118a038},
356 Isi = {WOS:A1993KY46600039},
357 Issn = {0022-3654},
358 Journal = jpc,
359 Month = {Apr},
360 Number = {16},
361 Pages = {4173--4181},
362 Publication-Type = {J},
363 Times-Cited = {198},
364 Title = {Transport Diffusivity of Methane in Silicalite from Equilibrium and Nonequilibrium Simulations},
365 Volume = {97},
366 Year = {1993},
367 Z8 = {4},
368 Z9 = {201},
369 Zb = {0},
370 Bdsk-Url-1 = {http://dx.doi.org/10.1021/j100118a038}}
371
372 @article{ERPENBECK:1984sp,
373 Author = {Erpenbeck, J. J.},
374 Date = {1984},
375 Date-Added = {2012-12-17 16:56:32 +0000},
376 Date-Modified = {2012-12-21 22:42:45 +0000},
377 Doi = {10.1103/PhysRevLett.52.1333},
378 Isi = {WOS:A1984SK96700021},
379 Issn = {0031-9007},
380 Journal = prl,
381 Number = {15},
382 Pages = {1333--1335},
383 Publication-Type = {J},
384 Times-Cited = {189},
385 Title = {Shear Viscosity of the Hard-Sphere Fluid via Nonequilibrium Molecular Dynamics},
386 Volume = {52},
387 Year = {1984},
388 Z8 = {0},
389 Z9 = {189},
390 Zb = {1},
391 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevLett.52.1333}}
392
393 @article{Evans:1982zk,
394 Author = {Evans, Denis J.},
395 Date-Added = {2012-12-17 16:56:24 +0000},
396 Date-Modified = {2013-02-18 17:59:06 +0000},
397 Journal = {Phys. Lett. A},
398 Number = {9},
399 Pages = {457--460},
400 Title = {Homogeneous NEMD Algorithm for Thermal Conductivity -- Application of Non-Canonical Linear Response Theory},
401 Ty = {JOUR},
402 Url = {http://www.sciencedirect.com/science/article/B6TVM-46SXM58-S0/1/b270d693318250f3ed0dbce1a535ea50},
403 Volume = {91},
404 Year = {1982},
405 Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/B6TVM-46SXM58-S0/1/b270d693318250f3ed0dbce1a535ea50}}
406
407 @article{ASHURST:1975tg,
408 Author = {Ashurst, W. T. and Hoover, W. G.},
409 Date = {1975},
410 Date-Added = {2012-12-17 16:56:05 +0000},
411 Date-Modified = {2012-12-21 22:42:31 +0000},
412 Doi = {10.1103/PhysRevA.11.658},
413 Isi = {WOS:A1975V548400036},
414 Issn = {1050-2947},
415 Journal = pra,
416 Number = {2},
417 Pages = {658--678},
418 Publication-Type = {J},
419 Times-Cited = {295},
420 Title = {Dense-Fluid Shear Viscosity via Nonequilibrium Molecular Dynamics},
421 Volume = {11},
422 Year = {1975},
423 Z8 = {3},
424 Z9 = {298},
425 Zb = {1},
426 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevA.11.658}}
427
428 @article{kinaci:014106,
429 Author = {A. Kinaci and J. B. Haskins and T. \c{C}a\u{g}in},
430 Date-Added = {2012-12-17 16:55:56 +0000},
431 Date-Modified = {2012-12-17 16:55:56 +0000},
432 Doi = {10.1063/1.4731450},
433 Eid = {014106},
434 Journal = jcp,
435 Keywords = {argon; elemental semiconductors; Ge-Si alloys; molecular dynamics method; nanostructured materials; porous semiconductors; silicon; thermal conductivity},
436 Number = {1},
437 Numpages = {8},
438 Pages = {014106},
439 Publisher = {AIP},
440 Title = {On Calculation of Thermal Conductivity from Einstein Relation in Equilibrium Molecular Dynamics},
441 Url = {http://link.aip.org/link/?JCP/137/014106/1},
442 Volume = {137},
443 Year = {2012},
444 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/137/014106/1},
445 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4731450}}
446
447 @article{che:6888,
448 Author = {Jianwei Che and Tahir Cagin and Weiqiao Deng and William A. Goddard III},
449 Date-Added = {2012-12-17 16:55:48 +0000},
450 Date-Modified = {2012-12-17 16:55:48 +0000},
451 Doi = {10.1063/1.1310223},
452 Journal = jcp,
453 Keywords = {diamond; thermal conductivity; digital simulation; vacancies (crystal); Green's function methods; isotope effects},
454 Number = {16},
455 Pages = {6888-6900},
456 Publisher = {AIP},
457 Title = {Thermal Conductivity of Diamond and Related Materials from Molecular Dynamics Simulations},
458 Url = {http://link.aip.org/link/?JCP/113/6888/1},
459 Volume = {113},
460 Year = {2000},
461 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/113/6888/1},
462 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1310223}}
463
464 @article{Viscardy:2007rp,
465 Abstract = {The thermal conductivity is calculated with the Helfand-moment method in the Lennard-Jones fluid near the triple point. The Helfand moment of thermal conductivity is here derived for molecular dynamics with periodic boundary conditions. Thermal conductivity is given by a generalized Einstein relation with this Helfand moment. The authors compute thermal conductivity by this new method and compare it with their own values obtained by the standard Green-Kubo method. The agreement is excellent. (C) 2007 American Institute of Physics.},
466 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
467 Author = {Viscardy, S. and Servantie, J. and Gaspard, P.},
468 Date = {MAY 14 2007},
469 Date-Added = {2012-12-17 16:55:32 +0000},
470 Date-Modified = {2013-02-18 17:58:40 +0000},
471 Doi = {ARTN 184513},
472 Journal = jcp,
473 Pages = {184513},
474 Publisher = {AMER INST PHYSICS},
475 Timescited = {1},
476 Title = {Transport and Helfand Moments in the Lennard-Jones Fluid. II. Thermal Conductivity},
477 Volume = {126},
478 Year = {2007},
479 Bdsk-Url-1 = {http://dx.doi.org/184513}}
480
481 @article{PhysRev.119.1,
482 Author = {Helfand, Eugene},
483 Date-Added = {2012-12-17 16:55:19 +0000},
484 Date-Modified = {2012-12-17 16:55:19 +0000},
485 Doi = {10.1103/PhysRev.119.1},
486 Journal = {Phys. Rev.},
487 Month = {Jul},
488 Number = {1},
489 Numpages = {8},
490 Pages = {1--9},
491 Publisher = {American Physical Society},
492 Title = {Transport Coefficients from Dissipation in a Canonical Ensemble},
493 Volume = {119},
494 Year = {1960},
495 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRev.119.1}}
496
497 @article{PhysRevA.34.1449,
498 Author = {Evans, Denis J.},
499 Date-Added = {2012-12-17 16:55:19 +0000},
500 Date-Modified = {2012-12-17 16:55:19 +0000},
501 Doi = {10.1103/PhysRevA.34.1449},
502 Journal = {Phys. Rev. A},
503 Month = {Aug},
504 Number = {2},
505 Numpages = {4},
506 Pages = {1449--1453},
507 Publisher = {American Physical Society},
508 Title = {Thermal Conductivity of the Lennard-Jones Fluid},
509 Volume = {34},
510 Year = {1986},
511 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevA.34.1449}}
512
513 @article{MASSOBRIO:1984bl,
514 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
515 Author = {Massobrio, C and Ciccotti, G},
516 Date = {1984},
517 Date-Added = {2012-12-17 16:55:03 +0000},
518 Date-Modified = {2012-12-21 22:42:02 +0000},
519 Journal = pra,
520 Pages = {3191-3197},
521 Publisher = {AMERICAN PHYSICAL SOC},
522 Timescited = {29},
523 Title = {Lennard-Jones Triple-Point Conductivity via Weak External Fields},
524 Volume = {30},
525 Year = {1984}}
526
527 @article{PhysRevB.37.5677,
528 Author = {Heyes, David M.},
529 Date-Added = {2012-12-17 16:54:55 +0000},
530 Date-Modified = {2012-12-17 16:54:55 +0000},
531 Doi = {10.1103/PhysRevB.37.5677},
532 Journal = prb,
533 Month = {Apr},
534 Number = {10},
535 Numpages = {19},
536 Pages = {5677--5696},
537 Publisher = {American Physical Society},
538 Title = {Transport Coefficients of Lennard-Jones Fluids: A Molecular-Dynamics and Effective-Hard-Sphere Treatment},
539 Volume = {37},
540 Year = {1988},
541 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.37.5677}}
542
543 @article{PhysRevB.80.195406,
544 Author = {Juv\'e, Vincent and Scardamaglia, Mattia and Maioli, Paolo and Crut, Aur\'elien and Merabia, Samy and Joly, Laurent and Del Fatti, Natalia and Vall\'ee, Fabrice},
545 Date-Added = {2012-12-17 16:54:55 +0000},
546 Date-Modified = {2012-12-17 16:54:55 +0000},
547 Doi = {10.1103/PhysRevB.80.195406},
548 Journal = prb,
549 Month = {Nov},
550 Number = {19},
551 Numpages = {6},
552 Pages = {195406},
553 Publisher = {American Physical Society},
554 Title = {Cooling Dynamics and Thermal Interface Resistance of Glass-Embedded Metal Nanoparticles},
555 Volume = {80},
556 Year = {2009},
557 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.80.195406}}
558
559 @article{Wang10082007,
560 Abstract = {At the level of individual molecules, familiar concepts of heat transport no longer apply. When large amounts of heat are transported through a molecule, a crucial process in molecular electronic devices, energy is carried by discrete molecular vibrational excitations. We studied heat transport through self-assembled monolayers of long-chain hydrocarbon molecules anchored to a gold substrate by ultrafast heating of the gold with a femtosecond laser pulse. When the heat reached the methyl groups at the chain ends, a nonlinear coherent vibrational spectroscopy technique detected the resulting thermally induced disorder. The flow of heat into the chains was limited by the interface conductance. The leading edge of the heat burst traveled ballistically along the chains at a velocity of 1 kilometer per second. The molecular conductance per chain was 50 picowatts per kelvin.},
561 Author = {Wang, Zhaohui and Carter, Jeffrey A. and Lagutchev, Alexei and Koh, Yee Kan and Seong, Nak-Hyun and Cahill, David G. and Dlott, Dana D.},
562 Date-Added = {2012-12-17 16:54:31 +0000},
563 Date-Modified = {2012-12-17 16:54:31 +0000},
564 Doi = {10.1126/science.1145220},
565 Eprint = {http://www.sciencemag.org/content/317/5839/787.full.pdf},
566 Journal = {Science},
567 Number = {5839},
568 Pages = {787-790},
569 Title = {Ultrafast Flash Thermal Conductance of Molecular Chains},
570 Url = {http://www.sciencemag.org/content/317/5839/787.abstract},
571 Volume = {317},
572 Year = {2007},
573 Bdsk-Url-1 = {http://www.sciencemag.org/content/317/5839/787.abstract},
574 Bdsk-Url-2 = {http://dx.doi.org/10.1126/science.1145220}}
575
576 @article{doi:10.1021/la904855s,
577 Annote = {PMID: 20166728},
578 Author = {Alper, Joshua and Hamad-Schifferli, Kimberly},
579 Date-Added = {2012-12-17 16:54:12 +0000},
580 Date-Modified = {2013-02-18 17:57:03 +0000},
581 Doi = {10.1021/la904855s},
582 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/la904855s},
583 Journal = {Langmuir},
584 Number = {6},
585 Pages = {3786-3789},
586 Title = {Effect of Ligands on Thermal Dissipation from Gold Nanorods},
587 Url = {http://pubs.acs.org/doi/abs/10.1021/la904855s},
588 Volume = {26},
589 Year = {2010},
590 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/la904855s},
591 Bdsk-Url-2 = {http://dx.doi.org/10.1021/la904855s}}
592
593 @article{doi:10.1021/jp048375k,
594 Abstract = { Water- and alcohol-soluble AuPd nanoparticles have been investigated to determine the effect of the organic stabilizing group on the thermal conductance G of the particle/fluid interface. The thermal decays of tiopronin-stabilized 3−5-nm diameter AuPd alloy nanoparticles, thioalkylated ethylene glycol-stabilized 3−5-nm diameter AuPd nanoparticles, and cetyltrimethylammonium bromide-stabilized 22-nm diameter Au-core/AuPd-shell nanoparticles give thermal conductances G ≈ 100−300 MW m-2 K-1 for the particle/water interfaces, approximately an order of magnitude larger than the conductance of the interfaces between alkanethiol-terminated AuPd nanoparticles and toluene. The similar values of G for particles ranging in size from 3 to 24 nm with widely varying surface chemistry indicate that the thermal coupling between AuPd nanoparticles and water is strong regardless of the self-assembled stabilizing group. },
595 Author = {Ge, Zhenbin and Cahill, David G. and Braun, Paul V.},
596 Date-Added = {2012-12-17 16:54:03 +0000},
597 Date-Modified = {2012-12-17 16:54:03 +0000},
598 Doi = {10.1021/jp048375k},
599 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp048375k},
600 Journal = jpcb,
601 Number = {49},
602 Pages = {18870-18875},
603 Title = {AuPd Metal Nanoparticles as Probes of Nanoscale Thermal Transport in Aqueous Solution},
604 Url = {http://pubs.acs.org/doi/abs/10.1021/jp048375k},
605 Volume = {108},
606 Year = {2004},
607 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp048375k},
608 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp048375k}}
609
610 @article{doi:10.1021/jp8051888,
611 Abstract = { Thermal transport between CTAB passivated gold nanorods and solvent is studied by an optical pump−probe technique. Increasing the free CTAB concentration from 1 mM to 10 mM causes a ∼3× increase in the CTAB layer's effective thermal interface conductance and a corresponding shift in the longitudinal surface plasmon resonance. The transition occurs near the CTAB critical micelle concentration, revealing the importance of the role of free ligand on thermal transport. },
612 Author = {Schmidt, Aaron J. and Alper, Joshua D. and Chiesa, Matteo and Chen, Gang and Das, Sarit K. and Hamad-Schifferli, Kimberly},
613 Date-Added = {2012-12-17 16:54:03 +0000},
614 Date-Modified = {2013-02-18 17:54:59 +0000},
615 Doi = {10.1021/jp8051888},
616 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp8051888},
617 Journal = jpcc,
618 Number = {35},
619 Pages = {13320-13323},
620 Title = {Probing the Gold Nanorod-Ligand-Solvent Interface by Plasmonic Absorption and Thermal Decay},
621 Url = {http://pubs.acs.org/doi/abs/10.1021/jp8051888},
622 Volume = {112},
623 Year = {2008},
624 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp8051888},
625 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp8051888}}
626
627 @article{PhysRevB.67.054302,
628 Author = {Costescu, Ruxandra M. and Wall, Marcel A. and Cahill, David G.},
629 Date-Added = {2012-12-17 16:53:48 +0000},
630 Date-Modified = {2012-12-17 16:53:48 +0000},
631 Doi = {10.1103/PhysRevB.67.054302},
632 Journal = prb,
633 Month = {Feb},
634 Number = {5},
635 Numpages = {5},
636 Pages = {054302},
637 Publisher = {American Physical Society},
638 Title = {Thermal Conductance of Epitaxial Interfaces},
639 Volume = {67},
640 Year = {2003},
641 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.67.054302}}
642
643 @article{cahill:793,
644 Author = {David G. Cahill and Wayne K. Ford and Kenneth E. Goodson and Gerald D. Mahan and Arun Majumdar and Humphrey J. Maris and Roberto Merlin and Simon R. Phillpot},
645 Date-Added = {2012-12-17 16:53:36 +0000},
646 Date-Modified = {2012-12-17 16:53:36 +0000},
647 Doi = {10.1063/1.1524305},
648 Journal = {J. Appl. Phys.},
649 Keywords = {nanostructured materials; reviews; thermal conductivity; interface phenomena; molecular dynamics method; thermal management (packaging); Boltzmann equation; carbon nanotubes; porosity; semiconductor superlattices; thermoreflectance; interface phonons; thermoelectricity; phonon-phonon interactions},
650 Number = {2},
651 Pages = {793-818},
652 Publisher = {AIP},
653 Title = {Nanoscale Thermal Transport},
654 Url = {http://link.aip.org/link/?JAP/93/793/1},
655 Volume = {93},
656 Year = {2003},
657 Bdsk-Url-1 = {http://link.aip.org/link/?JAP/93/793/1},
658 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1524305}}
659
660 @article{Eapen:2007mw,
661 Abstract = {In a well-dispersed nanofluid with strong cluster-fluid attraction, thermal conduction paths can arise through percolating amorphouslike interfacial structures. This results in a thermal conductivity enhancement beyond the Maxwell limit of 3 phi, with phi being the nanoparticle volume fraction. Our findings from nonequilibrium molecular dynamics simulations, which are amenable to experimental verification, can provide a theoretical basis for the development of future nanofluids.},
662 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
663 Author = {Eapen, Jacob and Li, Ju and Yip, Sidney},
664 Date = {DEC 2007},
665 Date-Added = {2012-12-17 16:53:30 +0000},
666 Date-Modified = {2013-02-18 17:48:08 +0000},
667 Doi = {ARTN 062501},
668 Journal = pre,
669 Pages = {062501},
670 Publisher = {AMER PHYSICAL SOC},
671 Timescited = {0},
672 Title = {Beyond the Maxwell Limit: Thermal Conduction in Nanofluids with Percolating Fluid Structures},
673 Volume = {76},
674 Year = {2007},
675 Bdsk-Url-1 = {http://dx.doi.org/062501}}
676
677 @article{Xue:2003ya,
678 Abstract = {Using nonequilibrium molecular dynamics simulations in which a temperature gradient is imposed, we determine the thermal resistance of a model liquid-solid interface. Our simulations reveal that the strength of the bonding between liquid and solid atoms plays a key role in determining interfacial thermal resistance. Moreover, we find that the functional dependence of the thermal resistance on the strength of the liquid-solid interactions exhibits two distinct regimes: (i) exponential dependence for weak bonding (nonwetting liquid) and (ii) power law dependence for strong bonding (wetting liquid). The identification of the two regimes of the Kapitza resistance has profound implications for understanding and designing the thermal properties of nanocomposite materials. (C) 2003 American Institute of Physics.},
679 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
680 Author = {Xue, L and Keblinski, P and Phillpot, SR and Choi, SUS and Eastman, JA},
681 Date = {JAN 1 2003},
682 Date-Added = {2012-12-17 16:53:22 +0000},
683 Date-Modified = {2012-12-17 16:53:22 +0000},
684 Doi = {DOI 10.1063/1.1525806},
685 Journal = jcp,
686 Pages = {337-339},
687 Publisher = {AMER INST PHYSICS},
688 Timescited = {19},
689 Title = {Two Regimes of Thermal Resistance at a Liquid-Solid Interface},
690 Volume = {118},
691 Year = {2003},
692 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1525806}}
693
694 @article{Xue:2004oa,
695 Abstract = {Using non-equilibrium molecular dynamics simulations in which a temperature gradient is imposed, we study how the ordering of the liquid at the liquid-solid interface affects the interfacial thermal resistance. Our simulations of a simple monoatomic liquid show no effect on the thermal transport either normal to the surface or parallel to the surface. Even for of a liquid that is highly confined between two solids, we find no effect on thermal conductivity. This contrasts with well-known significant effect of confinement on the viscoelastic response. Our findings suggest that the experimentally observed large enhancement of thermal conductivity in suspensions of solid nanosized particles (nanofluids) can not be explained by altered thermal transport properties of the layered liquid. (C) 2004 Elsevier Ltd. All rights reserved.},
696 Address = {THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND},
697 Author = {Xue, L and Keblinski, P and Phillpot, SR and Choi, SUS and Eastman, JA},
698 Date = {SEP 2004},
699 Date-Added = {2012-12-17 16:53:22 +0000},
700 Date-Modified = {2013-02-18 17:47:37 +0000},
701 Doi = {DOI 10.1016/ijheatmasstransfer.2004.05.016},
702 Journal = {Int. J. Heat Mass Tran.},
703 Keywords = {interfacial Thermal Resistance; liquid-solid interface; molecular dynamics simulations; nanofluids},
704 Pages = {4277-4284},
705 Publisher = {PERGAMON-ELSEVIER SCIENCE LTD},
706 Timescited = {29},
707 Title = {Effect of Liquid Layering at the Liquid-Solid Interface on Thermal Transport},
708 Volume = {47},
709 Year = {2004},
710 Bdsk-Url-1 = {http://dx.doi.org/10.1016/ijheatmasstransfer.2004.05.016}}
711
712 @article{Lee:1999ct,
713 Abstract = {Oxide nanofluids were produced and their thermal conductivities were measured by a transient hot-wire method. The experimental results show that these nanofluids, containing a small amount of nanoparticles, have substantially higher thermal conductivities than the same liquids without nanoparticles. Comparisons between experiments and the Hamilton and Crosser model show that the model can predict the thermal conductivity of nanofluids containing large agglomerated Al2O3 particles. However, the model appears to be inadequate for nanofluids containing CuO particles. This suggests that not only particle shape but size is considered to be dominant in enhancing the thermal conductivity of nanofluids.},
714 Address = {345 E 47TH ST, NEW YORK, NY 10017 USA},
715 Author = {Lee, S and Choi, SUS and Li, S and Eastman, JA},
716 Date = {MAY 1999},
717 Date-Added = {2012-12-17 16:53:15 +0000},
718 Date-Modified = {2013-02-18 17:46:57 +0000},
719 Journal = {J. Heat Transf.},
720 Keywords = {conduction; enhancement; heat transfer; nanoscale; two-phase},
721 Pages = {280-289},
722 Publisher = {ASME-AMER SOC MECHANICAL ENG},
723 Timescited = {183},
724 Title = {Measuring Thermal Conductivity of Fluids Containing Oxide Nanoparticles},
725 Volume = {121},
726 Year = {1999}}
727
728 @article{Keblinski:2002bx,
729 Abstract = {Recent measurements on nanofluids have demonstrated that the thermal conductivity increases with decreasing grain size. However, Such increases cannot be explained by existing theories. We explore four possible explanations for this anomalous increase: Brownian motion of the particles, molecular-level layering of the liquid at the liquid/particle interface, the nature of heat transport in the nanoparticles. and the effects of nanoparticle clustering. We show that the key factors in understanding thermal properties of nanofluids are the ballistic, rather than diffusive, nature of heat transport in the nanoparticles, combined with direct or fluid-mediated clustering effects that provide paths for rapid heat transport. (C) 2001 Elsevier Science Ltd. All rights reserved.},
730 Address = {THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND},
731 Author = {Keblinski, P and Phillpot, SR and Choi, SUS and Eastman, JA},
732 Date = {FEB 2002},
733 Date-Added = {2012-12-17 16:53:06 +0000},
734 Date-Modified = {2013-02-18 17:41:04 +0000},
735 Journal = {Int. J. Heat Mass Tran.},
736 Keywords = {thermal conductivity; nanofluids; molecular dynamics simulations; ballistic heat transport},
737 Pages = {855-863},
738 Publisher = {PERGAMON-ELSEVIER SCIENCE LTD},
739 Timescited = {161},
740 Title = {Mechanisms of Heat Flow in Suspensions of Nano-Sized Particles (Nanofluids)},
741 Volume = {45},
742 Year = {2002}}
743
744 @article{Eastman:2001wb,
745 Abstract = {It is shown that a "nanofluid" consisting of copper nanometer-sized particles dispersed in ethylene glycol has a much higher effective thermal conductivity than either pure ethylene glycol or ethylene glycol containing the same volume fraction of dispersed oxide nanoparticles. The effective thermal conductivity of ethylene glycol is shown to be increased by up to 40\% for a nanofluid consisting of ethylene glycol containing approximately 0.3 vol \% Cu nanoparticles of mean diameter < 10 nm. The results are anomalous based on previous theoretical calculations that had predicted a strong effect of particle shape on effective nanofluid thermal conductivity, but no effect of either particle size or particle thermal conductivity. (C) 2001 American Institute of Physics.},
746 Address = {2 HUNTINGTON QUADRANGLE, STE 1NO1, MELVILLE, NY 11747-4501 USA},
747 Author = {Eastman, JA and Choi, SUS and Li, S and Yu, W and Thompson, LJ},
748 Date = {FEB 5 2001},
749 Date-Added = {2012-12-17 16:52:55 +0000},
750 Date-Modified = {2013-02-18 17:40:41 +0000},
751 Journal = {Appl. Phys. Lett.},
752 Pages = {718-720},
753 Publisher = {AMER INST PHYSICS},
754 Timescited = {246},
755 Title = {Anomalously Increased Effective Thermal Conductivities of Ethylene Glycol-Based Nanofluids Containing Copper Nanoparticles},
756 Volume = {78},
757 Year = {2001}}
758
759 @article{Eapen:2007th,
760 Abstract = {Transient hot-wire data on thermal conductivity of suspensions of silica and perfluorinated particles show agreement with the mean-field theory of Maxwell but not with the recently postulated microconvection mechanism. The influence of interfacial thermal resistance, convective effects at microscales, and the possibility of thermal conductivity enhancements beyond the Maxwell limit are discussed.},
761 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
762 Author = {Eapen, Jacob and Williams, Wesley C. and Buongiorno, Jacopo and Hu, Lin-Wen and Yip, Sidney and Rusconi, Roberto and Piazza, Roberto},
763 Date = {AUG 31 2007},
764 Date-Added = {2012-12-17 16:52:46 +0000},
765 Date-Modified = {2013-02-18 17:40:15 +0000},
766 Doi = {ARTN 095901},
767 Journal = prl,
768 Pages = {095901},
769 Publisher = {AMER PHYSICAL SOC},
770 Timescited = {8},
771 Title = {Mean-Field Versus Microconvection Effects in Nanofluid Thermal Conduction},
772 Volume = {99},
773 Year = {2007},
774 Bdsk-Url-1 = {http://dx.doi.org/095901}}
775
776 @article{Plech:2005kx,
777 Abstract = {The transient structural response of laser excited gold nanoparticle sols has been recorded by pulsed X-ray scattering. Time resolved wide angle and small angle scattering (SAXS) record the changes in structure both of the nanoparticles and the water environment subsequent to femtosecond laser excitation. Within the first nanosecond after the excitation of the nanoparticles, the water phase shows a signature of compression, induced by a heat-induced evaporation of the water shell close to the heated nanoparticles. The particles themselves undergo a melting transition and are fragmented to Form new clusters in the nanometer range. (C) 2004 Elsevier B.V. All rights reserved.},
778 Author = {Plech, A and Kotaidis, V and Lorenc, M and Wulff, M},
779 Date-Added = {2012-12-17 16:52:34 +0000},
780 Date-Modified = {2012-12-17 16:52:34 +0000},
781 Doi = {DOI 10.1016/j.cplett.2004.11.072},
782 Journal = cpl,
783 Local-Url = {file://localhost/Users/charles/Documents/Papers/sdarticle3.pdf},
784 Pages = {565-569},
785 Title = {Thermal Dynamics in Laser Excited Metal Nanoparticles},
786 Volume = {401},
787 Year = {2005},
788 Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.cplett.2004.11.072}}
789
790 @article{Wilson:2002uq,
791 Abstract = {We investigate suspensions of 3-10 nm diameter Au, Pt, and AuPd nanoparticles as probes of thermal transport in fluids and determine approximate values for the thermal conductance G of the particle/fluid interfaces. Subpicosecond lambda=770 nm optical pulses from a Ti:sapphire mode-locked laser are used to heat the particles and interrogate the decay of their temperature through time-resolved changes in optical absorption. The thermal decay of alkanethiol-terminated Au nanoparticles in toluene is partially obscured by other effects; we set a lower limit G>20 MW m(-2)K(-1). The thermal decay of citrate-stabilized Pt nanoparticles in water gives Gapproximate to130 MW m(-2) K-1. AuPd alloy nanoparticles in toluene and stabilized by alkanethiol termination give Gapproximate to5 MW m(-2) K-1. The measured G are within a factor of 2 of theoretical estimates based on the diffuse-mismatch model.},
792 Author = {Wilson, OM and Hu, XY and Cahill, DG and Braun, PV},
793 Date-Added = {2012-12-17 16:52:22 +0000},
794 Date-Modified = {2013-02-18 17:34:52 +0000},
795 Doi = {ARTN 224301},
796 Journal = {Phys. Rev. B},
797 Local-Url = {file://localhost/Users/charles/Documents/Papers/e2243010.pdf},
798 Pages = {224301},
799 Title = {Colloidal Metal Particles as Probes of Nanoscale Thermal Transport in Fluids},
800 Volume = {66},
801 Year = {2002},
802 Bdsk-Url-1 = {http://dx.doi.org/224301}}
803
804 @article{Mazzaglia:2008to,
805 Abstract = {Amphiphilic cyclodextrins (CDs) modified in the upper rim with thiohexyl groups and in the lower rim with oligoethylene amino (SC6NH2) or oligoethylene hydroxyl groups (SC6OH) can bind gold colloids, yielding Au/CD particles with an average hydrodynamic radius (RH) of 2 and 25 rim in water solution. The systems were investigated by UV-vis, quasi-elastic light scattering, and FTIR-ATR techniques. The concentration of amphiphiles was kept above the concentration of gold colloids to afford complete covering. In the case of SC6NH2, basic conditions (Et3N, pH 11) yield promptly the decoration of Au, which can be stabilized by linkage of CD amino and/or thioether groups. The critical aggregation concentration of SC6NH2 was measured (similar to 4 mu M) by surface tension measurements, pointing out that about 50\% of CDs are present in nonaggregated form. Whereas Au/SC6NH2 colloids were stable in size and morphology for at least one month, the size of the Au/SC6OH system increases remarkably, forming nanoaggregates of 20 and 80 rim in two hours. Under physiological conditions, the gold/amino amphiphiles system can internalize in HeLa cells, as shown by extinction spectra registered on the immobilized cells. The gold delivered by cyclodextrins can induce photothermal damage upon irradiation, doubling the cell mortality with respect to uncovered gold colloids. These findings can open useful perspectives to the application of these self-assembled systems in cancer photothermal therapy.},
806 Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
807 Author = {Mazzaglia, Antonino and Trapani, Mariachiara and Villari, Valentina and Micali, Norberto and Merlo, Francesca Marino and Zaccaria, Daniela and Sciortino, Maria Teresa and Previti, Francesco and Patane, Salvatore and Scolaro, Luigi Monsu},
808 Date = {MAY 1 2008},
809 Date-Added = {2012-12-17 16:52:15 +0000},
810 Date-Modified = {2012-12-17 16:52:15 +0000},
811 Doi = {DOI 10.1021/jp7120033},
812 Journal = jpcc,
813 Pages = {6764-6769},
814 Publisher = {AMER CHEMICAL SOC},
815 Timescited = {0},
816 Title = {Amphiphilic Cyclodextrins as Capping Agents for Gold Colloids: A Spectroscopic Investigation with Perspectives in Photothermal Therapy},
817 Volume = {112},
818 Year = {2008},
819 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp7120033}}
820
821 @article{Gnyawali:2008lp,
822 Abstract = {Tissue surface temperature distribution on the treatment site can serve as an indicator for the effectiveness of a photothermal therapy. In this study, both infrared thermography and theoretical simulation were used to determine the surface temperature distribution during laser irradiation of both gel phantom and animal tumors. Selective photothermal interaction was attempted by using intratumoral indocyanine green enhancement and irradiation via a near-infrared laser. An immunoadjuvant was also used to enhance immunological responses during tumor treatment. Monte Carlo method for tissue absorption of light and finite difference method for heat diffusion in tissue were used to simulate the temperature distribution during the selective laser photothermal interaction. An infrared camera was used to capture the thermal images during the laser treatment and the surface temperature was determined. Our findings show that the theoretical and experimental results are in good agreement and that the surface temperature of irradiated tissue can be controlled with appropriate dye and adjuvant enhancement. These results can be used to control the laser tumor treatment parameters and to optimize the treatment outcome. More importantly, when used with immunotherapy as a precursor of immunological responses, the selective photothermal treatment can be guided by the tissue temperature profiles both in the tumor and on the surface.},
823 Address = {TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY},
824 Author = {Gnyawali, Surya C. and Chen, Yicho and Wu, Feng and Bartels, Kenneth E. and Wicksted, James P. and Liu, Hong and Sen, Chandan K. and Chen, Wei R.},
825 Date = {FEB 2008},
826 Date-Added = {2012-12-17 16:52:08 +0000},
827 Date-Modified = {2013-02-18 17:32:43 +0000},
828 Doi = {DOI 10.1007/s11517-007-0251-5},
829 Journal = {Med. Biol. Eng. Comput.},
830 Keywords = {infrared thermography; indocyanine green; glycated chitosan; surface temperature; Monte Carlo simulation},
831 Pages = {159-168},
832 Publisher = {SPRINGER HEIDELBERG},
833 Timescited = {0},
834 Title = {Temperature Measurement on Tissue Surface During Laser Irradiation},
835 Volume = {46},
836 Year = {2008},
837 Bdsk-Url-1 = {http://dx.doi.org/10.1007/s11517-007-0251-5}}
838
839 @article{Petrova:2007ad,
840 Abstract = {This paper describes our recent time-resolved spectroscopy studies of the properties of gold particles at high laser excitation levels. In these experiments, an intense pump laser pulse rapidly heats the particle, creating very high lattice temperatures - up to the melting point of bulk gold. These high temperatures can have dramatic effects on the particle and the surroundings. The lattice temperature created is determined by observing the coherently excited the vibrational modes of the particles. The periods of these modes depend on temperature, thus, they act as an internal thermometer. We have used these experiments to provide values for the threshold temperatures for explosive boiling of the solvent surrounding the particles, and laser induced structural transformations in non-spherical particles. The results of these experiments are relevant to the use of metal nanoparticles in photothermal therapy, where laser induced heating is used to selectively kill cells.},
841 Address = {LEKTORAT MINT, POSTFACH 80 13 60, D-81613 MUNICH, GERMANY},
842 Author = {Petrova, Hristina and Hu, Min and Hartland, Gregory V.},
843 Date = {2007},
844 Date-Added = {2012-12-17 16:52:01 +0000},
845 Date-Modified = {2013-02-18 17:32:23 +0000},
846 Doi = {DOI 10.1524/zpch.2007.221.3.361},
847 Journal = {Z Phys. Chem.},
848 Keywords = {metal nanoparticles; phonon modes; photothermal properties; laser-induced heating},
849 Pages = {361-376},
850 Publisher = {OLDENBOURG VERLAG},
851 Timescited = {2},
852 Title = {Photothermal Properties of Gold Nanoparticles},
853 Volume = {221},
854 Year = {2007},
855 Bdsk-Url-1 = {http://dx.doi.org/10.1524/zpch.2007.221.3.361}}
856
857 @article{Jain:2007ux,
858 Abstract = {Noble metal, especially gold (Au) and silver (Ag) nanoparticles exhibit unique and tunable optical properties on account of their surface plasmon resonance (SPR). In this review, we discuss the SPR-enhanced optical properties of noble metal nanoparticles, with an emphasis on the recent advances in the utility of these plasmonic properties in molecular-specific imaging and sensing, photo-diagnostics, and selective photothermal therapy. The strongly enhanced SPR scattering from Au nanoparticles makes them useful as bright optical tags for molecular-specific biological imaging and detection using simple dark-field optical microscopy. On the other hand, the SPR absorption of the nanoparticles has allowed their use in the selective laser photothermal therapy of cancer. We also discuss the sensitivity of the nanoparticle SPR frequency to the local medium dielectric constant, which has been successfully exploited for the optical sensing of chemical and biological analytes. Plasmon coupling between metal nanoparticle pairs is also discussed, which forms the basis for nanoparticle assembly-based biodiagnostics and the plasmon ruler for dynamic measurement of nanoscale distances in biological systems.},
859 Address = {233 SPRING STREET, NEW YORK, NY 10013 USA},
860 Author = {Jain, Prashant K. and Huang, Xiaohua and El-Sayed, Ivan H. and El-Sayad, Mostafa A.},
861 Date = {SEP 2007},
862 Date-Added = {2012-12-17 16:51:52 +0000},
863 Date-Modified = {2013-02-18 17:25:37 +0000},
864 Doi = {DOI 10.1007/s11468-007-9031-1},
865 Journal = {Plasmonics},
866 Keywords = {surface plasmon resonance (SPR); SPR sensing; Mie scattering; metal nanocrystals for biodiagnostics; photothermal therapy; plasmon coupling},
867 Number = {3},
868 Pages = {107-118},
869 Publisher = {SPRINGER},
870 Timescited = {2},
871 Title = {Review of Some Interesting Surface Plasmon Resonance-Enhanced Properties of Noble Metal Nanoparticles and Their Applications to Biosystems},
872 Volume = {2},
873 Year = {2007},
874 Bdsk-Url-1 = {http://dx.doi.org/10.1007/s11468-007-9031-1}}
875
876 @techreport{Goddard1998,
877 Author = {Kimura, Y. and Cagin, T. and Goddard III, W.A.},
878 Date-Added = {2012-12-05 22:18:01 +0000},
879 Date-Modified = {2012-12-05 22:18:01 +0000},
880 Institution = {California Institute of Technology},
881 Lastchecked = {January 19, 2011},
882 Number = {003},
883 Title = {The Quantum Sutton-Chen Many Body Potential for Properties of fcc Metals},
884 Url = {http://csdrm.caltech.edu/publications/cit-asci-tr/cit-asci-tr003.pdf},
885 Year = {1998},
886 Bdsk-Url-1 = {http://csdrm.caltech.edu/publications/cit-asci-tr/cit-asci-tr003.pdf}}
887
888 @article{Kuang2010,
889 Author = {Shenyu Kuang and J. Daniel Gezelter},
890 Date-Added = {2012-12-05 22:18:01 +0000},
891 Date-Modified = {2012-12-05 22:18:01 +0000},
892 Journal = {J. Chem. Phys.},
893 Keywords = {NIVS, RNEMD, NIVS-RNEMD},
894 Month = {October},
895 Pages = {164101-1 - 164101-9},
896 Title = {A Gentler Approach to RNEMD: Nonisotropic Velocity Scaling for Computing Thermal Conductivity and Shear Viscosity},
897 Volume = {133},
898 Year = {2010}}
899
900 @article{Kuang2012,
901 Author = {Shenyu Kuang and J. Daniel Gezelter},
902 Date-Added = {2012-12-05 22:18:01 +0000},
903 Date-Modified = {2012-12-05 22:18:01 +0000},
904 Journal = {Mol. Phys.},
905 Keywords = {VSS, RNEMD, VSS-RNEMD},
906 Month = {May},
907 Number = {9-10},
908 Pages = {691-701},
909 Title = {Velocity Shearing and Scaling RNEMD: A Minimally Perturbing Method for Simulating Temperature and Momentum Gradients},
910 Volume = {110},
911 Year = {2012}}
912
913 @article{doi:10.1080/0026897031000068578,
914 Abstract = { Using equilibrium and non-equilibrium molecular dynamics simulations, we determine the Kapitza resistance (or thermal contact resistance) at a model liquid-solid interface. The Kapitza resistance (or the associated Kapitza length) can reach appreciable values when the liquid does not wet the solid. The analogy with the hydrodynamic slip length is discussed. },
915 Author = {Barrat, Jean-Louis and Chiaruttini, Fran{\c c}ois},
916 Date-Added = {2011-12-13 17:17:05 -0500},
917 Date-Modified = {2011-12-13 17:17:05 -0500},
918 Doi = {10.1080/0026897031000068578},
919 Eprint = {http://tandfprod.literatumonline.com/doi/pdf/10.1080/0026897031000068578},
920 Journal = {Mol. Phys.},
921 Number = {11},
922 Pages = {1605-1610},
923 Title = {Kapitza Resistance at the Liquid--Solid Interface},
924 Url = {http://tandfprod.literatumonline.com/doi/abs/10.1080/0026897031000068578},
925 Volume = {101},
926 Year = {2003},
927 Bdsk-Url-1 = {http://tandfprod.literatumonline.com/doi/abs/10.1080/0026897031000068578},
928 Bdsk-Url-2 = {http://dx.doi.org/10.1080/0026897031000068578}}
929
930 @article{Medina2011,
931 Abstract = {Molecular dynamics (MD) simulations are carried out on a system of rigid or flexible water molecules at a series of temperatures between 273 and 368&#xa0;K. Collective transport coefficients, such as shear and bulk viscosities are calculated, and their behavior is systematically investigated as a function of flexibility and temperature. It is found that by including the intramolecular terms in the potential the calculated viscosity values are in overall much better agreement, compared to earlier and recent available experimental data, than those obtained with the rigid SPC/E model. The effect of the intramolecular degrees of freedom on transport properties of liquid water is analyzed and the incorporation of polarizability is discussed for further improvements. To our knowledge the present study constitutes the first compendium of results on viscosities for pure liquid water, including flexible models, that has been assembled.},
932 Author = {J.S. Medina and R. Prosmiti and P. Villarreal and G. Delgado-Barrio and G. Winter and B. Gonz{\'a}lez and J.V. Alem{\'a}n and C. Collado},
933 Date-Added = {2011-12-13 17:08:34 -0500},
934 Date-Modified = {2011-12-13 17:08:49 -0500},
935 Doi = {10.1016/j.chemphys.2011.07.001},
936 Issn = {0301-0104},
937 Journal = {Chemical Physics},
938 Keywords = {Viscosity calculations},
939 Number = {1-3},
940 Pages = {9 - 18},
941 Title = {Molecular Dynamics Simulations of Rigid and Flexible Water Models: Temperature Dependence of Viscosity},
942 Url = {http://www.sciencedirect.com/science/article/pii/S0301010411002813},
943 Volume = {388},
944 Year = {2011},
945 Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0301010411002813},
946 Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.chemphys.2011.07.001}}
947
948 @book{WagnerKruse,
949 Address = {Berlin},
950 Author = {W. Wagner and A. Kruse},
951 Date-Added = {2011-12-13 14:57:08 -0500},
952 Date-Modified = {2011-12-13 14:57:08 -0500},
953 Publisher = {Springer-Verlag},
954 Title = {Properties of Water and Steam, the Industrial Standard IAPWS-IF97 for the Thermodynamic Properties and Supplementary Equations for Other Properties},
955 Year = {1998}}
956
957 @article{garde:PhysRevLett2009,
958 Author = {Shenogina, Natalia and Godawat, Rahul and Keblinski, Pawel and Garde, Shekhar},
959 Date-Added = {2011-12-13 12:48:51 -0500},
960 Date-Modified = {2011-12-13 12:48:51 -0500},
961 Doi = {10.1103/PhysRevLett.102.156101},
962 Journal = {Phys. Rev. Lett.},
963 Month = {Apr},
964 Number = {15},
965 Numpages = {4},
966 Pages = {156101},
967 Publisher = {American Physical Society},
968 Title = {How Wetting and Adhesion Affect Thermal Conductance of a Range of Hydrophobic to Hydrophilic Aqueous Interfaces},
969 Volume = {102},
970 Year = {2009},
971 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevLett.102.156101}}
972
973 @article{garde:nl2005,
974 Abstract = { Systems with nanoscopic features contain a high density of interfaces. Thermal transport in such systems can be governed by the resistance to heat transfer, the Kapitza resistance (RK), at the interface. Although soft interfaces, such as those between immiscible liquids or between a biomolecule and solvent, are ubiquitous, few studies of thermal transport at such interfaces have been reported. Here we characterize the interfacial conductance, 1/RK, of soft interfaces as a function of molecular architecture, chemistry, and the strength of cross-interfacial intermolecular interactions through detailed molecular dynamics simulations. The conductance of various interfaces studied here, for example, water−organic liquid, water−surfactant, surfactant−organic liquid, is relatively high (in the range of 65−370 MW/m2 K) compared to that for solid−liquid interfaces (∼10 MW/m2 K). Interestingly, the dependence of interfacial conductance on the chemistry and molecular architecture cannot be explained solely in terms of either bulk property mismatch or the strength of intermolecular attraction between the two phases. The observed trends can be attributed to a combination of strong cross-interface intermolecular interactions and good thermal coupling via soft vibration modes present at liquid−liquid interfaces. },
975 Annote = {PMID: 16277458},
976 Author = {Patel, Harshit A. and Garde, Shekhar and Keblinski, Pawel},
977 Date-Added = {2011-12-13 12:48:51 -0500},
978 Date-Modified = {2013-02-18 18:00:24 +0000},
979 Doi = {10.1021/nl051526q},
980 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/nl051526q},
981 Journal = {Nano Lett.},
982 Number = {11},
983 Pages = {2225-2231},
984 Title = {Thermal Resistance of Nanoscopic Liquid−Liquid Interfaces:  Dependence on Chemistry and Molecular Architecture},
985 Url = {http://pubs.acs.org/doi/abs/10.1021/nl051526q},
986 Volume = {5},
987 Year = {2005},
988 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/nl051526q},
989 Bdsk-Url-2 = {http://dx.doi.org/10.1021/nl051526q}}
990
991 @article{melchionna93,
992 Author = {S. Melchionna and G. Ciccotti and B.~L. Holian},
993 Date-Added = {2011-12-12 17:52:15 -0500},
994 Date-Modified = {2011-12-12 17:52:15 -0500},
995 Journal = {Mol. Phys.},
996 Pages = {533-544},
997 Title = {Hoover {\sc NPT} Dynamics for Systems Varying in Shape and Size},
998 Volume = 78,
999 Year = 1993}
1000
1001 @article{TraPPE-UA.thiols,
1002 Author = {Lubna, Nusrat and Kamath, Ganesh and Potoff, Jeffrey J. and Rai, Neeraj and Siepmann, J. Ilja},
1003 Date-Added = {2011-12-07 15:06:12 -0500},
1004 Date-Modified = {2011-12-07 15:06:12 -0500},
1005 Doi = {10.1021/jp0549125},
1006 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp0549125},
1007 Journal = {J. Phys. Chem. B},
1008 Number = {50},
1009 Pages = {24100-24107},
1010 Title = {Transferable Potentials for Phase Equilibria. 8. United-Atom Description for Thiols, Sulfides, Disulfides, and Thiophene},
1011 Url = {http://pubs.acs.org/doi/abs/10.1021/jp0549125},
1012 Volume = {109},
1013 Year = {2005},
1014 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp0549125},
1015 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp0549125}}
1016
1017 @article{TraPPE-UA.alkylbenzenes,
1018 Author = {Wick, Collin D. and Martin, Marcus G. and Siepmann, J. Ilja},
1019 Date-Added = {2011-12-07 15:06:12 -0500},
1020 Date-Modified = {2011-12-07 15:06:12 -0500},
1021 Doi = {10.1021/jp001044x},
1022 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp001044x},
1023 Journal = {J. Phys. Chem. B},
1024 Number = {33},
1025 Pages = {8008-8016},
1026 Title = {Transferable Potentials for Phase Equilibria. 4. United-Atom Description of Linear and Branched Alkenes and Alkylbenzenes},
1027 Url = {http://pubs.acs.org/doi/abs/10.1021/jp001044x},
1028 Volume = {104},
1029 Year = {2000},
1030 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp001044x},
1031 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp001044x}}
1032
1033 @article{TraPPE-UA.alkanes,
1034 Author = {Martin, Marcus G. and Siepmann, J. Ilja},
1035 Date-Added = {2011-12-07 15:06:12 -0500},
1036 Date-Modified = {2011-12-07 15:06:12 -0500},
1037 Doi = {10.1021/jp972543+},
1038 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp972543%2B},
1039 Journal = {J. Phys. Chem. B},
1040 Number = {14},
1041 Pages = {2569-2577},
1042 Title = {Transferable Potentials for Phase Equilibria. 1. United-Atom Description of n-Alkanes},
1043 Url = {http://pubs.acs.org/doi/abs/10.1021/jp972543%2B},
1044 Volume = {102},
1045 Year = {1998},
1046 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp972543+},
1047 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp972543+},
1048 Bdsk-Url-3 = {http://pubs.acs.org/doi/abs/10.1021/jp972543%2B}}
1049
1050 @article{ISI:000167766600035,
1051 Abstract = {Molecular dynamics simulations are used to
1052 investigate the separation of water films adjacent
1053 to a hot metal surface. The simulations clearly show
1054 that the water layers nearest the surface overheat
1055 and undergo explosive boiling. For thick films, the
1056 expansion of the vaporized molecules near the
1057 surface forces the outer water layers to move away
1058 from the surface. These results are of interest for
1059 mass spectrometry of biological molecules, steam
1060 cleaning of surfaces, and medical procedures.},
1061 Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
1062 Affiliation = {Garrison, BJ (Reprint Author), Penn State Univ, Dept Chem, University Pk, PA 16802 USA. Penn State Univ, Dept Chem, University Pk, PA 16802 USA. Penn State Univ, Inst Mat Res, University Pk, PA 16802 USA. Univ Virginia, Dept Mat Sci \& Engn, Charlottesville, VA 22903 USA.},
1063 Author = {Dou, YS and Zhigilei, LV and Winograd, N and Garrison, BJ},
1064 Date-Added = {2011-12-07 15:02:32 -0500},
1065 Date-Modified = {2011-12-07 15:02:32 -0500},
1066 Doc-Delivery-Number = {416ED},
1067 Issn = {1089-5639},
1068 Journal = {J. Phys. Chem. A},
1069 Journal-Iso = {J. Phys. Chem. A},
1070 Keywords-Plus = {MOLECULAR-DYNAMICS SIMULATIONS; ASSISTED LASER-DESORPTION; FROZEN AQUEOUS-SOLUTIONS; COMPUTER-SIMULATION; ORGANIC-SOLIDS; VELOCITY DISTRIBUTIONS; PARTICLE BOMBARDMENT; MASS-SPECTROMETRY; PHASE EXPLOSION; LIQUID WATER},
1071 Language = {English},
1072 Month = {MAR 29},
1073 Number = {12},
1074 Number-Of-Cited-References = {65},
1075 Pages = {2748-2755},
1076 Publisher = {AMER CHEMICAL SOC},
1077 Subject-Category = {Chemistry, Physical; Physics, Atomic, Molecular \& Chemical},
1078 Times-Cited = {66},
1079 Title = {Explosive Boiling of Water Films Adjacent to Heated Surfaces: A Microscopic Description},
1080 Type = {Article},
1081 Unique-Id = {ISI:000167766600035},
1082 Volume = {105},
1083 Year = {2001}}
1084
1085 @article{Chen90,
1086 Author = {A.~P. Sutton and J. Chen},
1087 Date-Added = {2011-12-07 15:01:59 -0500},
1088 Date-Modified = {2013-02-18 18:01:16 +0000},
1089 Journal = {Phil. Mag. Lett.},
1090 Pages = {139-146},
1091 Title = {Long-Range Finnis Sinclair Potentials},
1092 Volume = 61,
1093 Year = {1990}}
1094
1095 @article{PhysRevB.59.3527,
1096 Author = {Qi, Yue and \c{C}a\v{g}in, Tahir and Kimura, Yoshitaka and {Goddard III}, William A.},
1097 Date-Added = {2011-12-07 15:01:36 -0500},
1098 Date-Modified = {2013-02-18 18:00:57 +0000},
1099 Doi = {10.1103/PhysRevB.59.3527},
1100 Journal = {Phys. Rev. B},
1101 Local-Url = {file://localhost/Users/charles/Documents/Papers/Qi/1999.pdf},
1102 Month = {Feb},
1103 Number = {5},
1104 Numpages = {6},
1105 Pages = {3527-3533},
1106 Publisher = {American Physical Society},
1107 Title = {Molecular-Dynamics Simulations of Glass Formation and Crystallization in Binary Liquid Metals: {C}u-{A}g and {C}u-{N}i},
1108 Volume = {59},
1109 Year = {1999},
1110 Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.59.3527}}
1111
1112 @article{Bedrov:2000,
1113 Abstract = {We have applied a new nonequilibrium molecular
1114 dynamics (NEMD) method {[}F. Muller-Plathe,
1115 J. Chem. Phys. 106, 6082 (1997)] previously applied
1116 to monatomic Lennard-Jones fluids in the
1117 determination of the thermal conductivity of
1118 molecular fluids. The method was modified in order
1119 to be applicable to systems with holonomic
1120 constraints. Because the method involves imposing a
1121 known heat flux it is particularly attractive for
1122 systems involving long-range and many-body
1123 interactions where calculation of the microscopic
1124 heat flux is difficult. The predicted thermal
1125 conductivities of liquid n-butane and water using
1126 the imposed-flux NEMD method were found to be in a
1127 good agreement with previous simulations and
1128 experiment. (C) 2000 American Institute of
1129 Physics. {[}S0021-9606(00)50841-1].},
1130 Address = {2 HUNTINGTON QUADRANGLE, STE 1NO1, MELVILLE, NY 11747-4501 USA},
1131 Affiliation = {Bedrov, D (Reprint Author), Univ Utah, Dept Chem \& Fuels Engn, 122 S Cent Campus Dr,Rm 304, Salt Lake City, UT 84112 USA. Univ Utah, Dept Chem \& Fuels Engn, Salt Lake City, UT 84112 USA. Univ Utah, Dept Mat Sci \& Engn, Salt Lake City, UT 84112 USA.},
1132 Author = {Bedrov, D and Smith, GD},
1133 Date-Added = {2011-12-07 15:00:27 -0500},
1134 Date-Modified = {2011-12-07 15:00:27 -0500},
1135 Doc-Delivery-Number = {369BF},
1136 Issn = {0021-9606},
1137 Journal = {J. Chem. Phys.},
1138 Journal-Iso = {J. Chem. Phys.},
1139 Keywords-Plus = {EFFECTIVE PAIR POTENTIALS; TRANSPORT-PROPERTIES; CANONICAL ENSEMBLE; NORMAL-BUTANE; ALGORITHMS; SHAKE; WATER},
1140 Language = {English},
1141 Month = {NOV 8},
1142 Number = {18},
1143 Number-Of-Cited-References = {26},
1144 Pages = {8080-8084},
1145 Publisher = {AMER INST PHYSICS},
1146 Read = {1},
1147 Subject-Category = {Physics, Atomic, Molecular \& Chemical},
1148 Times-Cited = {23},
1149 Title = {Thermal Conductivity of Molecular Fluids from Molecular Dynamics Simulations: Application of a New Imposed-Flux Method},
1150 Type = {Article},
1151 Unique-Id = {ISI:000090151400044},
1152 Volume = {113},
1153 Year = {2000}}
1154
1155 @article{10.1063/1.3330544,
1156 Author = {Miguel Angel Gonz{\'a}lez and Jos{\'e} L. F. Abascal},
1157 Coden = {JCPSA6},
1158 Date-Added = {2011-12-07 14:59:20 -0500},
1159 Date-Modified = {2011-12-15 13:10:11 -0500},
1160 Doi = {DOI:10.1063/1.3330544},
1161 Eissn = {10897690},
1162 Issn = {00219606},
1163 Journal = {J. Chem. Phys.},
1164 Keywords = {shear strength; viscosity;},
1165 Number = {9},
1166 Pages = {096101},
1167 Publisher = {AIP},
1168 Title = {The Shear Viscosity of Rigid Water Models},
1169 Url = {http://dx.doi.org/doi/10.1063/1.3330544},
1170 Volume = {132},
1171 Year = {2010},
1172 Bdsk-Url-1 = {http://dx.doi.org/doi/10.1063/1.3330544},
1173 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.3330544}}
1174
1175 @article{doi:10.1021/jp048434u,
1176 Abstract = { The different possible proton-ordered structures of ice Ih for an orthorombic unit cell with 8 water molecules were derived. The number of unique structures was found to be 16. The crystallographic coordinates of these are reported. The energetics of the different polymorphs were investigated by quantum-mechanical density-functional theory calculations and for comparison by molecular-mechanics analytical potential models. The polymorphs were found to be close in energy, i.e., within approximately 0.25 kcal/mol H2O, on the basis of the quantum-chemical DFT methods. At 277 K, the different energy levels are about evenly populated, but at a lower temperature, a transition to an ordered form is expected. This form was found to agree with the ice phase XI. The difference in lattice energies among the polymorphs was rationalized in terms of structural characteristics. The most important parameters to determine the lattice energies were found to be the distributions of water dimer H-bonded pair conformations, in an intricate manner. },
1177 Author = {Hirsch, Tomas K. and Ojam{\"a}e, Lars},
1178 Date-Added = {2011-12-07 14:38:30 -0500},
1179 Date-Modified = {2011-12-07 14:38:30 -0500},
1180 Doi = {10.1021/jp048434u},
1181 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp048434u},
1182 Journal = {J. Phys. Chem. B},
1183 Number = {40},
1184 Pages = {15856-15864},
1185 Title = {Quantum-Chemical and Force-Field Investigations of Ice Ih:  Computation of Proton-Ordered Structures and Prediction of Their Lattice Energies},
1186 Url = {http://pubs.acs.org/doi/abs/10.1021/jp048434u},
1187 Volume = {108},
1188 Year = {2004},
1189 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp048434u},
1190 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp048434u}}
1191
1192 @article{Meineke:2005gd,
1193 Abstract = {OOPSE is a new molecular dynamics simulation program
1194 that is capable of efficiently integrating equations
1195 of motion for atom types with orientational degrees
1196 of freedom (e.g. #sticky# atoms and point
1197 dipoles). Transition metals can also be simulated
1198 using the embedded atom method (EAM) potential
1199 included in the code. Parallel simulations are
1200 carried out using the force-based decomposition
1201 method. Simulations are specified using a very
1202 simple C-based meta-data language. A number of
1203 advanced integrators are included, and the basic
1204 integrator for orientational dynamics provides
1205 substantial improvements over older quaternion-based
1206 schemes.},
1207 Address = {111 RIVER ST, HOBOKEN, NJ 07030 USA},
1208 Author = {Meineke, M. A. and Vardeman, C. F. and Lin, T and Fennell, CJ and Gezelter, J. D.},
1209 Date-Added = {2011-12-07 13:33:04 -0500},
1210 Date-Modified = {2011-12-07 13:33:04 -0500},
1211 Doi = {DOI 10.1002/jcc.20161},
1212 Isi = {000226558200006},
1213 Isi-Recid = {142688207},
1214 Isi-Ref-Recids = {67885400 50663994 64190493 93668415 46699855 89992422 57614458 49016001 61447131 111114169 68770425 52728075 102422498 66381878 32391149 134477335 53221357 9929643 59492217 69681001 99223832 142688208 94600872 91658572 54857943 117365867 69323123 49588888 109970172 101670714 142688209 121603296 94652379 96449138 99938010 112825758 114905670 86802042 121339042 104794914 82674909 72096791 93668384 90513335 142688210 23060767 63731466 109033408 76303716 31384453 97861662 71842426 130707771 125809946 66381889 99676497},
1215 Journal = {J. Comput. Chem.},
1216 Keywords = {OOPSE; molecular dynamics},
1217 Month = feb,
1218 Number = {3},
1219 Pages = {252-271},
1220 Publisher = {JOHN WILEY \& SONS INC},
1221 Times-Cited = {9},
1222 Title = {OOPSE: An Object-Oriented Parallel Simulation Engine for Molecular Dynamics},
1223 Volume = {26},
1224 Year = {2005},
1225 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000226558200006},
1226 Bdsk-Url-2 = {http://dx.doi.org/10.1002/jcc.20161}}
1227
1228 @article{hoover85,
1229 Author = {W.~G. Hoover},
1230 Date-Added = {2011-12-06 14:23:41 -0500},
1231 Date-Modified = {2011-12-06 14:23:41 -0500},
1232 Journal = {Phys. Rev. A},
1233 Pages = 1695,
1234 Title = {Canonical Dynamics: Equilibrium Phase-Space Distributions},
1235 Volume = 31,
1236 Year = 1985}
1237
1238 @article{Maginn:2010,
1239 Abstract = {The reverse nonequilibrium molecular dynamics
1240 (RNEMD) method calculates the shear viscosity of a
1241 fluid by imposing a nonphysical exchange of momentum
1242 and measuring the resulting shear velocity
1243 gradient. In this study we investigate the range of
1244 momentum flux values over which RNEMD yields usable
1245 (linear) velocity gradients. We find that nonlinear
1246 velocity profiles result primarily from gradients in
1247 fluid temperature and density. The temperature
1248 gradient results from conversion of heat into bulk
1249 kinetic energy, which is transformed back into heat
1250 elsewhere via viscous heating. An expression is
1251 derived to predict the temperature profile resulting
1252 from a specified momentum flux for a given fluid and
1253 simulation cell. Although primarily bounded above,
1254 we also describe milder low-flux limitations. RNEMD
1255 results for a Lennard-Jones fluid agree with
1256 equilibrium molecular dynamics and conventional
1257 nonequilibrium molecular dynamics calculations at
1258 low shear, but RNEMD underpredicts viscosity
1259 relative to conventional NEMD at high shear.},
1260 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
1261 Affiliation = {Tenney, CM (Reprint Author), Univ Notre Dame, Dept Chem \& Biomol Engn, 182 Fitzpatrick Hall, Notre Dame, IN 46556 USA. {[}Tenney, Craig M.; Maginn, Edward J.] Univ Notre Dame, Dept Chem \& Biomol Engn, Notre Dame, IN 46556 USA.},
1262 Article-Number = {014103},
1263 Author = {Tenney, Craig M. and Maginn, Edward J.},
1264 Author-Email = {ed@nd.edu},
1265 Date-Added = {2011-12-05 18:29:08 -0500},
1266 Date-Modified = {2011-12-05 18:29:08 -0500},
1267 Doc-Delivery-Number = {542DQ},
1268 Doi = {10.1063/1.3276454},
1269 Funding-Acknowledgement = {U.S. Department of Energy {[}DE-FG36-08G088020]},
1270 Funding-Text = {Support for this work was provided by the U.S. Department of Energy (Grant No. DE-FG36-08G088020)},
1271 Issn = {0021-9606},
1272 Journal = {J. Chem. Phys.},
1273 Journal-Iso = {J. Chem. Phys.},
1274 Keywords = {Lennard-Jones potential; molecular dynamics method; Navier-Stokes equations; viscosity},
1275 Keywords-Plus = {CURRENT AUTOCORRELATION-FUNCTION; IONIC LIQUID; SIMULATIONS; TEMPERATURE},
1276 Language = {English},
1277 Month = {JAN 7},
1278 Number = {1},
1279 Number-Of-Cited-References = {20},
1280 Pages = {014103},
1281 Publisher = {AMER INST PHYSICS},
1282 Subject-Category = {Physics, Atomic, Molecular \& Chemical},
1283 Times-Cited = {0},
1284 Title = {Limitations and Recommendations for the Calculation of Shear Viscosity using Reverse Nonequilibrium Molecular Dynamics},
1285 Type = {Article},
1286 Unique-Id = {ISI:000273472300004},
1287 Volume = {132},
1288 Year = {2010},
1289 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.3276454}}
1290
1291 @article{ISI:000080382700030,
1292 Abstract = {A nonequilibrium method for calculating the shear
1293 viscosity is presented. It reverses the
1294 cause-and-effect picture customarily used in
1295 nonequilibrium molecular dynamics: the effect, the
1296 momentum flux or stress, is imposed, whereas the
1297 cause, the velocity gradient or shear rate, is
1298 obtained from the simulation. It differs from other
1299 Norton-ensemble methods by the way in which the
1300 steady-state momentum flux is maintained. This
1301 method involves a simple exchange of particle
1302 momenta, which is easy to implement. Moreover, it
1303 can be made to conserve the total energy as well as
1304 the total linear momentum, so no coupling to an
1305 external temperature bath is needed. The resulting
1306 raw data, the velocity profile, is a robust and
1307 rapidly converging property. The method is tested on
1308 the Lennard-Jones fluid near its triple point. It
1309 yields a viscosity of 3.2-3.3, in Lennard-Jones
1310 reduced units, in agreement with literature
1311 results. {[}S1063-651X(99)03105-0].},
1312 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
1313 Affiliation = {Muller-Plathe, F (Reprint Author), Max Planck Inst Polymerforsch, Ackermannweg 10, D-55128 Mainz, Germany. Max Planck Inst Polymerforsch, D-55128 Mainz, Germany.},
1314 Author = {M\"{u}ller-Plathe, F},
1315 Date-Added = {2011-12-05 18:18:37 -0500},
1316 Date-Modified = {2011-12-05 18:18:37 -0500},
1317 Doc-Delivery-Number = {197TX},
1318 Issn = {1063-651X},
1319 Journal = {Phys. Rev. E},
1320 Journal-Iso = {Phys. Rev. E},
1321 Language = {English},
1322 Month = {MAY},
1323 Number = {5, Part A},
1324 Number-Of-Cited-References = {17},
1325 Pages = {4894-4898},
1326 Publisher = {AMERICAN PHYSICAL SOC},
1327 Subject-Category = {Physics, Fluids \& Plasmas; Physics, Mathematical},
1328 Times-Cited = {57},
1329 Title = {Reversing the Perturbation in Nonequilibrium Molecular Dynamics: An Easy Way to Calculate the Shear Viscosity of Fluids},
1330 Type = {Article},
1331 Unique-Id = {ISI:000080382700030},
1332 Volume = {59},
1333 Year = {1999}}
1334
1335 @article{MullerPlathe:1997xw,
1336 Abstract = {A nonequilibrium molecular dynamics method for
1337 calculating the thermal conductivity is
1338 presented. It reverses the usual cause and effect
1339 picture. The ''effect,'' the heat flux, is imposed
1340 on the system and the ''cause,'' the temperature
1341 gradient is obtained from the simulation. Besides
1342 being very simple to implement, the scheme offers
1343 several advantages such as compatibility with
1344 periodic boundary conditions, conservation of total
1345 energy and total linear momentum, and the sampling
1346 of a rapidly converging quantity (temperature
1347 gradient) rather than a slowly converging one (heat
1348 flux). The scheme is tested on the Lennard-Jones
1349 fluid. (C) 1997 American Institute of Physics.},
1350 Address = {WOODBURY},
1351 Author = {M\"{u}ller-Plathe, F.},
1352 Cited-Reference-Count = {13},
1353 Date = {APR 8},
1354 Date-Added = {2011-12-05 18:18:37 -0500},
1355 Date-Modified = {2011-12-05 18:18:37 -0500},
1356 Document-Type = {Article},
1357 Isi = {ISI:A1997WR62000032},
1358 Isi-Document-Delivery-Number = {WR620},
1359 Iso-Source-Abbreviation = {J. Chem. Phys.},
1360 Issn = {0021-9606},
1361 Journal = {J. Chem. Phys.},
1362 Language = {English},
1363 Month = {Apr},
1364 Number = {14},
1365 Page-Count = {4},
1366 Pages = {6082--6085},
1367 Publication-Type = {J},
1368 Publisher = {AMER INST PHYSICS},
1369 Publisher-Address = {CIRCULATION FULFILLMENT DIV, 500 SUNNYSIDE BLVD, WOODBURY, NY 11797-2999},
1370 Reprint-Address = {MullerPlathe, F, MAX PLANCK INST POLYMER RES, D-55128 MAINZ, GERMANY.},
1371 Source = {J CHEM PHYS},
1372 Subject-Category = {Physics, Atomic, Molecular & Chemical},
1373 Times-Cited = {106},
1374 Title = {A Simple Nonequilibrium Molecular Dynamics Method for Calculating the Thermal Conductivity},
1375 Volume = {106},
1376 Year = {1997}}
1377
1378 @article{priezjev:204704,
1379 Author = {Nikolai V. Priezjev},
1380 Date-Added = {2011-11-28 14:39:18 -0500},
1381 Date-Modified = {2011-11-28 14:39:18 -0500},
1382 Doi = {10.1063/1.3663384},
1383 Eid = {204704},
1384 Journal = {J. Chem. Phys.},
1385 Keywords = {channel flow; diffusion; flow simulation; hydrodynamics; molecular dynamics method; pattern formation; random processes; shear flow; slip flow; wetting},
1386 Number = {20},
1387 Numpages = {9},
1388 Pages = {204704},
1389 Publisher = {AIP},
1390 Title = {Molecular Diffusion and Slip Boundary Conditions at Smooth Surfaces with Periodic and Random Nanoscale Textures},
1391 Url = {http://link.aip.org/link/?JCP/135/204704/1},
1392 Volume = {135},
1393 Year = {2011},
1394 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/135/204704/1},
1395 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.3663384}}
1396
1397 @article{bryk:10258,
1398 Author = {Taras Bryk and A. D. J. Haymet},
1399 Date-Added = {2011-11-22 17:06:35 -0500},
1400 Date-Modified = {2011-11-22 17:06:35 -0500},
1401 Doi = {10.1063/1.1519538},
1402 Journal = {J. Chem. Phys.},
1403 Keywords = {liquid structure; molecular dynamics method; water; ice; interface structure},
1404 Number = {22},
1405 Pages = {10258-10268},
1406 Publisher = {AIP},
1407 Title = {Ice 1h/Water Interface of the SPC/E Model: Molecular Dynamics Simulations of the Equilibrium Basal and Prism Interfaces},
1408 Url = {http://link.aip.org/link/?JCP/117/10258/1},
1409 Volume = {117},
1410 Year = {2002},
1411 Bdsk-Url-1 = {http://link.aip.org/link/?JCP/117/10258/1},
1412 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1519538}}
1413
1414 @misc{openmd,
1415 Author = {J. Daniel Gezelter and Shenyu Kuang and James Marr and Kelsey Stocker and Chunlei Li and Charles F. Vardeman and Teng Lin and Christopher J. Fennell and Xiuquan Sun and Kyle Daily and Yang Zheng and Matthew A. Meineke},
1416 Date-Added = {2011-11-18 15:32:23 -0500},
1417 Date-Modified = {2011-11-18 15:32:23 -0500},
1418 Howpublished = {Available at {\tt http://openmd.net}},
1419 Title = {{OpenMD, an Open Source Engine for Molecular Dynamics}}}
1420
1421 @article{kuang:AuThl,
1422 Author = {Kuang, Shenyu and Gezelter, J. Daniel},
1423 Date-Added = {2011-11-18 13:03:06 -0500},
1424 Date-Modified = {2011-12-05 17:58:01 -0500},
1425 Doi = {10.1021/jp2073478},
1426 Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp2073478},
1427 Journal = {J. Phys. Chem. C},
1428 Number = {45},
1429 Pages = {22475-22483},
1430 Title = {Simulating Interfacial Thermal Conductance at Metal-Solvent Interfaces: The Role of Chemical Capping Agents},
1431 Url = {http://pubs.acs.org/doi/abs/10.1021/jp2073478},
1432 Volume = {115},
1433 Year = {2011},
1434 Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp2073478},
1435 Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp2073478}}
1436
1437 @article{10.1063/1.2772547,
1438 Author = {Hideo Kaburaki and Ju Li and Sidney Yip and Hajime Kimizuka},
1439 Coden = {JAPIAU},
1440 Date-Added = {2011-11-01 16:46:32 -0400},
1441 Date-Modified = {2011-11-01 16:46:32 -0400},
1442 Doi = {DOI:10.1063/1.2772547},
1443 Eissn = {10897550},
1444 Issn = {00218979},
1445 Keywords = {argon; Lennard-Jones potential; phonons; thermal conductivity;},
1446 Number = {4},
1447 Pages = {043514},
1448 Publisher = {AIP},
1449 Title = {Dynamical Thermal Conductivity of Argon Crystal},
1450 Url = {http://dx.doi.org/10.1063/1.2772547},
1451 Volume = {102},
1452 Year = {2007},
1453 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.2772547}}
1454
1455 @article{PhysRevLett.82.4671,
1456 Author = {Barrat, Jean-Louis and Bocquet, Lyd\'eric},
1457 Date-Added = {2011-11-01 16:44:29 -0400},
1458 Date-Modified = {2011-11-01 16:44:29 -0400},
1459 Doi = {10.1103/PhysRevLett.82.4671},
1460 Issue = {23},
1461 Journal = {Phys. Rev. Lett.},
1462 Month = {Jun},
1463 Pages = {4671--4674},
1464 Publisher = {American Physical Society},
1465 Title = {Large Slip Effect at a Nonwetting Fluid-Solid Interface},
1466 Url = {http://link.aps.org/doi/10.1103/PhysRevLett.82.4671},
1467 Volume = {82},
1468 Year = {1999},
1469 Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevLett.82.4671},
1470 Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevLett.82.4671}}
1471
1472 @article{10.1063/1.1610442,
1473 Author = {J. R. Schmidt and J. L. Skinner},
1474 Coden = {JCPSA6},
1475 Date-Added = {2011-10-13 16:28:43 -0400},
1476 Date-Modified = {2011-12-15 13:11:53 -0500},
1477 Doi = {DOI:10.1063/1.1610442},
1478 Eissn = {10897690},
1479 Issn = {00219606},
1480 Journal = {J. Chem. Phys.},
1481 Keywords = {hydrodynamics; Brownian motion; molecular dynamics method; diffusion;},
1482 Number = {15},
1483 Pages = {8062-8068},
1484 Publisher = {AIP},
1485 Title = {Hydrodynamic Boundary Conditions, the Stokes?Einstein Law, and Long-Time Tails in the Brownian Limit},
1486 Url = {http://dx.doi.org/10.1063/1.1610442},
1487 Volume = {119},
1488 Year = {2003},
1489 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1610442}}
1490
1491 @article{10.1063/1.3274802,
1492 Author = {Ting Chen and Berend Smit and Alexis T. Bell},
1493 Coden = {JCPSA6},
1494 Doi = {DOI:10.1063/1.3274802},
1495 Eissn = {10897690},
1496 Issn = {00219606},
1497 Keywords = {fluctuations; molecular dynamics method; viscosity;},
1498 Number = {24},
1499 Pages = {246101},
1500 Publisher = {AIP},
1501 Title = {Are Pressure Fluctuation-Based Equilibrium Methods Really Worse than Nonequilibrium Methods for Calculating Viscosities?},
1502 Url = {http://dx.doi.org/doi/10.1063/1.3274802},
1503 Volume = {131},
1504 Year = {2009},
1505 Bdsk-Url-1 = {http://dx.doi.org/doi/10.1063/1.3274802},
1506 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.3274802}}