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1 chrisfen 3001 \chapter{\label{chap:ice}PHASE BEHAVIOR OF WATER IN COMPUTER \\ SIMULATIONS}
2 chrisfen 2987
3     As discussed in the previous chapter, water has proven to be a
4     challenging substance to depict in simulations, and a variety of
5     models have been developed to describe its behavior under varying
6     simulation
7     conditions.\cite{Stillinger74,Rahman75,Berendsen81,Jorgensen83,Bratko85,Berendsen87,Caldwell95,Liu96,vanderSpoel98,Urbic00,Mahoney00,Fennell04}
8     These models have been used to investigate important physical
9     phenomena like phase transitions and the hydrophobic
10     effect.\cite{Yamada02,Marrink94,Gallagher03} With the choice of models
11     available, it is only natural to compare them under interesting
12     thermodynamic conditions in an attempt to clarify the limitations of
13     each.\cite{Jorgensen83,Jorgensen98b,Baez94,Mahoney01} Two important
14     property to quantify are the Gibbs and Helmholtz free energies,
15     particularly for the solid forms of water, as these predict the
16     thermodynamic stability of the various phases. Water has a
17     particularly rich phase diagram and takes on a number of different and
18     stable crystalline structures as the temperature and pressure are
19     varied. This complexity makes it a challenging task to investigate the
20     entire free energy landscape.\cite{Sanz04} Ideally, research is
21     focused on the phases having the lowest free energy at a given state
22     point, because these phases will dictate the relevant transition
23     temperatures and pressures for the model.
24    
25     The high-pressure phases of water (ice II-ice X as well as ice XII)
26     have been studied extensively both experimentally and
27     computationally. In this chapter, standard reference state methods
28     were applied in the {\it low} pressure regime to evaluate the free
29     energies for a few known crystalline water polymorphs that might be
30     stable at these pressures. This work is unique in the fact that one of
31     the crystal lattices was arrived at through crystallization of a
32     computationally efficient water model under constant pressure and
33     temperature conditions.
34    
35     While performing a series of melting simulations on an early iteration
36     of SSD/E, we observed several recrystallization events at a constant
37     pressure of 1 atm. After melting from ice I$_\textrm{h}$ at 235~K, two
38     of five systems recrystallized near 245~K. Crystallization events are
39     interesting in and of themselves;\cite{Matsumoto02,Yamada02} however,
40     the crystal structure extracted from these systems is different from
41     any previously observed ice polymorphs in experiment or
42     simulation.\cite{Fennell04} We have named this structure Ice-{\it i}
43     to indicate its origin in computational simulation. The unit cell of
44     Ice-$i$ and an axially elongated variant named Ice-$i^\prime$ both
45     consist of eight water molecules that stack in rows of interlocking
46     water tetramers as illustrated in figure \ref{fig:iceiCell}A,B. These
47     tetramers form a crystal structure similar in appearance to a recent
48     two-dimensional surface tessellation simulated on silica.\cite{Yang04}
49     As expected in an ice crystal constructed of water tetramers, the
50     hydrogen bonds are not as linear as those observed in ice
51     I$_\textrm{h}$; however, the interlocking of these subunits appears to
52     provide significant stabilization to the overall crystal. The
53     arrangement of these tetramers results in open octagonal cavities that
54     are typically greater than 6.3~\AA\ in diameter (see figure
55     \ref{fig:protOrder}). This open structure leads to crystals that are
56     typically 0.07~g/cm$^3$ less dense than ice I$_\textrm{h}$.
57    
58     \begin{figure}
59     \includegraphics[width=\linewidth]{./figures/unitCell.pdf}
60     \caption{Unit cells for (A) Ice-{\it i} and (B) Ice-$i^\prime$, the
61     elongated variant of Ice-{\it i}. For Ice-{\it i}, the $a$ to $c$
62     relation is given by $a = 2.1214c$, while for Ice-$i^\prime$, $a =
63     1.7850c$.}
64     \label{fig:iceiCell}
65     \end{figure}
66    
67     \begin{figure}
68     \centering
69     \includegraphics[width=3.5in]{./figures/orderedIcei.pdf}
70     \caption{Image of a proton ordered crystal of Ice-{\it i} looking
71     down the (001) crystal face. The rows of water tetramers surrounded by
72     octagonal pores leads to a crystal structure that is significantly
73     less dense than ice I$_\textrm{h}$.}
74     \label{fig:protOrder}
75     \end{figure}
76    
77     Results from our initial studies indicated that Ice-{\it i} is the
78     minimum energy crystal structure for the single point water models
79     investigated (for discussions on these single point dipole models, see
80     the previous work and related
81     articles\cite{Fennell04,Liu96,Bratko85}). These earlier results only
82     considered energetic stabilization and neglected entropic
83     contributions to the overall free energy. To address this issue, we
84     have calculated the absolute free energy of this crystal using
85     thermodynamic integration and compared to the free energies of ice
86     I$_\textrm{c}$ and ice I$_\textrm{h}$ (the common low-density ice
87     polymorphs) and ice B (a higher density, but very stable crystal
88     structure observed by B\'{a}ez and Clancy in free energy studies of
89     SPC/E).\cite{Baez95b} This work includes results for the water model
90     from which Ice-{\it i} was crystallized (SSD/E) in addition to several
91     common water models (TIP3P, TIP4P, TIP5P, and SPC/E) and a reaction
92     field parametrized single point dipole water model (SSD/RF). The
93     axially elongated variant, Ice-$i^\prime$, was used in calculations
94     involving SPC/E, TIP4P, and TIP5P. The square tetramer in Ice-$i$
95     distorts in Ice-$i^\prime$ to form a rhombus with alternating 85 and
96     95 degree angles. Under SPC/E, TIP4P, and TIP5P, this geometry is
97     better at forming favorable hydrogen bonds. The degree of rhomboid
98     distortion depends on the water model used but is significant enough
99     to split the peak in the radial distribution function which corresponds
100     to diagonal sites in the tetramers.
101    
102     \section{Methods and Thermodynamic Integration}
103    
104     Canonical ensemble ({\it NVT}) molecular dynamics calculations were
105     performed using the OOPSE molecular mechanics package.\cite{Meineke05}
106     The densities chosen for the simulations were taken from
107     isobaric-isothermal ({\it NPT}) simulations performed at 1 atm and
108     200~K. Each model (and each crystal structure) was allowed to relax for
109     300~ps in the {\it NPT} ensemble before averaging the density to obtain
110     the volumes for the {\it NVT} simulations.All molecules were treated
111     as rigid bodies, with orientational motion propagated using the
112     symplectic DLM integration method described in section
113     \ref{sec:IntroIntegrate}.
114    
115    
116     We used thermodynamic integration to calculate the Helmholtz free
117     energies ({\it A}) of the listed water models at various state
118     points. Thermodynamic integration is an established technique that has
119     been used extensively in the calculation of free energies for
120     condensed phases of
121     materials.\cite{Frenkel84,Hermens88,Meijer90,Baez95a,Vlot99}. This
122     method uses a sequence of simulations over which the system of
123     interest is converted into a reference system for which the free
124     energy is known analytically ($A_0$). The difference in potential
125     energy between the reference system and the system of interest
126     ($\Delta V$) is then integrated in order to determine the free energy
127     difference between the two states:
128     \begin{equation}
129     A = A_0 + \int_0^1 \left\langle \Delta V \right\rangle_\lambda d\lambda.
130     \end{equation}
131     Here, $\lambda$ is the parameter that governs the transformation
132     between the reference system and the system of interest. For
133     crystalline phases, an harmonically-restrained (Einstein) crystal is
134     chosen as the reference state, while for liquid phases, the ideal gas
135     is taken as the reference state. Figure \ref{fig:integrationPath}
136     shows an example integration path for converting a crystalline system
137     to the Einstein crystal reference state.
138     \begin{figure}
139     \includegraphics[width=\linewidth]{./figures/integrationPath.pdf}
140     \caption{An example integration path to convert an unrestrained
141     crystal ($\lambda = 1$) to the Einstein crystal reference state
142     ($\lambda = 0$). Note the increase in samples at either end of the
143     path to improve the smoothness of the curve. For reversible processes,
144     conversion of the Einstein crystal back to the system of interest will
145     give an identical plot, thereby integrating to the same result.}
146     \label{fig:integrationPath}
147     \end{figure}
148    
149     In an Einstein crystal, the molecules are restrained at their ideal
150     lattice locations and orientations. Using harmonic restraints, as
151     applied by B\'{a}ez and Clancy, the total potential for this reference
152     crystal ($V_\mathrm{EC}$) is the sum of all the harmonic restraints,
153     \begin{equation}
154     V_\mathrm{EC} = \frac{K_\mathrm{v}r^2}{2} + \frac{K_\theta\theta^2}{2} +
155     \frac{K_\omega\omega^2}{2},
156     \end{equation}
157     where $K_\mathrm{v}$, $K_\mathrm{\theta}$, and $K_\mathrm{\omega}$ are
158     the spring constants restraining translational motion and deflection
159     of and rotation around the principle axis of the molecule
160     respectively. These spring constants are typically calculated from
161     the mean-square displacements of water molecules in an unrestrained
162     ice crystal at 200~K. For these studies, $K_\mathrm{v} =
163     4.29$~kcal~mol$^{-1}$~\AA$^{-2}$, $K_\theta\ =
164     13.88$~kcal~mol$^{-1}$~rad$^{-2}$, and $K_\omega\ =
165     17.75$~kcal~mol$^{-1}$~rad$^{-2}$. It is clear from
166     Fig. \ref{fig:waterSpring} that the values of $\theta$ range from $0$
167     to $\pi$, while $\omega$ ranges from $-\pi$ to $\pi$. The partition
168     function for a molecular crystal restrained in this fashion can be
169     evaluated analytically, and the Helmholtz Free Energy ({\it A}) is
170     given by
171     \begin{equation}
172     \begin{split}
173     A = E_m &- kT\ln\left(\frac{kT}{h\nu}\right)^3 \\
174     &- kT\ln\left[\pi^\frac{1}{2}\left(
175     \frac{8\pi^2I_\mathrm{A}kT}{h^2}\right)^\frac{1}{2}
176     \left(\frac{8\pi^2I_\mathrm{B}kT}{h^2}\right)^\frac{1}{2}
177     \left(\frac{8\pi^2I_\mathrm{C}kT}{h^2}\right)^\frac{1}{2}
178     \right] \\
179     &- kT\ln\left[\frac{kT}{2(\pi K_\omega K_\theta)^{\frac{1}{2}}}
180     \exp\left(-\frac{kT}{2K_\theta}\right)
181     \int_0^{\left(\frac{kT}{2K_\theta}\right)^\frac{1}{2}}
182     \exp(t^2)\mathrm{d}t\right],
183     \end{split}
184     \label{eq:ecFreeEnergy}
185     \end{equation}
186     where $2\pi\nu = (K_\mathrm{v}/m)^{1/2}$, and $E_m$ is the minimum
187     potential energy of the ideal crystal.\cite{Baez95a} The choice of an
188     Einstein crystal reference state is somewhat arbitrary. Any ideal
189     system for which the partition function is known exactly could be used
190     as a reference point as long as the system does not undergo a phase
191     transition during the integration path between the real and ideal
192     systems. Nada and van der Eerden have shown that the use of different
193     force constants in the Einstein crystal does not affect the total
194     free energy, and Gao {\it et al.} have shown that free energies
195     computed with the Debye crystal reference state differ from the
196     Einstein crystal by only a few tenths of a
197     kJ~mol$^{-1}$.\cite{Nada03,Gao00} These free energy differences can
198     lead to some uncertainty in the computed melting point of the solids.
199     \begin{figure}
200     \centering
201     \includegraphics[width=3.5in]{./figures/rotSpring.pdf}
202     \caption{Possible orientational motions for a restrained molecule.
203     $\theta$ angles correspond to displacement from the body-frame {\it
204     z}-axis, while $\omega$ angles correspond to rotation about the
205     body-frame {\it z}-axis. $K_\theta$ and $K_\omega$ are spring
206     constants for the harmonic springs restraining motion in the $\theta$
207     and $\omega$ directions.}
208     \label{fig:waterSpring}
209     \end{figure}
210    
211     In the case of molecular liquids, the ideal vapor is chosen as the
212     target reference state. There are several examples of liquid state
213     free energy calculations of water models present in the
214     literature.\cite{Hermens88,Quintana92,Mezei92,Baez95b} These methods
215     typically differ in regard to the path taken for switching off the
216     interaction potential to convert the system to an ideal gas of water
217     molecules. In this study, we applied one of the most convenient
218     methods and integrated over the $\lambda^4$ path, where all
219     interaction parameters are scaled equally by this transformation
220     parameter. This method has been shown to be reversible and provide
221     results in excellent agreement with other established
222     methods.\cite{Baez95b}
223    
224 chrisfen 3004 The Helmholtz free energy error was determined in the same manner in
225     both the solid and the liquid free energy calculations . At each point
226     along the integration path, we calculated the standard deviation of
227     the potential energy difference. Addition or subtraction of these
228     values to each of their respective points and integrating the curve
229     again provides the upper and lower bounds of the uncertainty in the
230     Helmholtz free energy.
231    
232 chrisfen 2987 Near the cutoff radius ($0.85 * r_{cut}$), charge, dipole, and
233     Lennard-Jones interactions were gradually reduced by a cubic switching
234     function. By applying this function, these interactions are smoothly
235     truncated, thereby avoiding the poor energy conservation which results
236     from harsher truncation schemes. The effect of a long-range
237     correction was also investigated on select model systems in a variety
238     of manners. For the SSD/RF model, a reaction field with a fixed
239     dielectric constant of 80 was applied in all
240     simulations.\cite{Onsager36} For a series of the least computationally
241     expensive models (SSD/E, SSD/RF, TIP3P, and SPC/E), simulations were
242     performed with longer cutoffs of 10.5, 12, 13.5, and 15~\AA\ to
243     compare with the 9~\AA\ cutoff results. Finally, the effects of using
244     the Ewald summation were estimated for TIP3P and SPC/E by performing
245     single configuration Particle-Mesh Ewald (PME) calculations for each
246     of the ice polymorphs.\cite{Ponder87} The calculated energy difference
247     in the presence and absence of PME was applied to the previous results
248     in order to predict changes to the free energy landscape.
249    
250     \section{Initial Free Energy Results}
251    
252     The calculated free energies of proton-ordered variants of three low
253     density polymorphs (I$_\textrm{h}$, I$_\textrm{c}$, and Ice-{\it i} or
254     Ice-$i^\prime$) and the stable higher density ice B are listed in
255     table \ref{tab:freeEnergy}. Ice B was included because it has been
256     shown to be a minimum free energy structure for SPC/E at ambient
257     conditions.\cite{Baez95b} In addition to the free energies, the
258     relevant transition temperatures at standard pressure are also
259     displayed in table \ref{tab:freeEnergy}. These free energy values
260     indicate that Ice-{\it i} is the most stable state for all of the
261     investigated water models. With the free energy at these state
262     points, the Gibbs-Helmholtz equation was used to project to other
263     state points and to build phase diagrams. Figures
264     \ref{fig:tp3PhaseDia} and \ref{fig:ssdrfPhaseDia} are example diagrams
265     built from the results for the TIP3P and SSD/RF water models. All
266     other models have similar structure, although the crossing points
267     between the phases move to different temperatures and pressures as
268     indicated from the transition temperatures in table
269     \ref{tab:freeEnergy}. It is interesting to note that ice
270     I$_\textrm{h}$ (and ice I$_\textrm{c}$ for that matter) do not appear
271     in any of the phase diagrams for any of the models. For purposes of
272     this study, ice B is representative of the dense ice polymorphs. A
273     recent study by Sanz {\it et al.} provides details on the phase
274     diagrams for SPC/E and TIP4P at higher pressures than those studied
275     here.\cite{Sanz04}
276     \begin{table}
277     \centering
278     \caption{HELMHOLTZ FREE ENERGIES AND TRANSITION TEMPERATURES AT 1
279     ATMOSPHERE FOR SEVERAL WATER MODELS}
280    
281     \footnotesize
282     \begin{tabular}{lccccccc}
283     \toprule
284     \toprule
285     Water Model & I$_\textrm{h}$ & I$_\textrm{c}$ & B & Ice-{\it i} & Ice-$i^\prime$ & $T_\textrm{m}$ (*$T_\textrm{s}$) & $T_\textrm{b}$\\
286     \cmidrule(lr){2-6}
287     \cmidrule(l){7-8}
288     & \multicolumn{5}{c}{(kcal mol$^{-1}$)} & \multicolumn{2}{c}{(K)}\\
289     \midrule
290     TIP5P & -11.85(3) & -11.86(2) & -11.96(2) & - & -12.29(2) & 266(7) & 337(4)\\
291     TIP4P & -11.84(3) & -12.04(2) & -12.08(3) & - & -12.33(3) & 262(6) & 354(4)\\
292     TIP3P & -11.41(2) & -11.23(3) & -11.82(3) & -12.30(3) & - & 269(7) & 357(4)\\
293     SPC/E & -12.87(2) & -13.05(2) & -13.26(3) & - & -13.55(2) & 299(6) & 396(4)\\
294     SSD/E & -11.27(2) & -11.19(4) & -12.09(2) & -12.54(2) & - & *355(4) & -\\
295     SSD/RF & -11.96(2) & -11.60(2) & -12.53(3) & -12.79(2) & - & 278(7) & 382(4)\\
296     \bottomrule
297     \end{tabular}
298     \label{tab:freeEnergy}
299     \end{table}
300    
301     \begin{figure}
302     \centering
303     \includegraphics[width=\linewidth]{./figures/tp3PhaseDia.pdf}
304     \caption{Phase diagram for the TIP3P water model in the low pressure
305     regime. The displayed $T_m$ and $T_b$ values are good predictions of
306     the experimental values; however, the solid phases shown are not the
307     experimentally observed forms. Both cubic and hexagonal ice $I$ are
308     higher in energy and don't appear in the phase diagram.}
309     \label{fig:tp3PhaseDia}
310     \end{figure}
311    
312     \begin{figure}
313     \centering
314     \includegraphics[width=\linewidth]{./figures/ssdrfPhaseDia.pdf}
315     \caption{Phase diagram for the SSD/RF water model in the low pressure
316     regime. Calculations producing these results were done under an
317     applied reaction field. It is interesting to note that this
318     computationally efficient model (over 3 times more efficient than
319     TIP3P) exhibits phase behavior similar to the less computationally
320     conservative charge based models.}
321     \label{fig:ssdrfPhaseDia}
322     \end{figure}
323    
324     We note that all of the crystals investigated in this study are ideal
325     proton-ordered antiferroelectric structures. All of the structures
326     obey the Bernal-Fowler rules and should be able to form stable
327     proton-{\it disordered} crystals which have the traditional
328     $k_\textrm{B}$ln(3/2) residual entropy at 0~K.\cite{Bernal33,Pauling35}
329     Simulations of proton-disordered structures are relatively unstable
330     with all but the most expensive water models.\cite{Nada03} Our
331     simulations have therefore been performed with the ordered
332     antiferroelectric structures which do not require the residual entropy
333     term to be accounted for in the free energies. This may result in some
334     discrepancies when comparing our melting temperatures to the melting
335     temperatures that have been calculated via thermodynamic integrations
336     of the disordered structures.\cite{Sanz04}
337    
338     Most of the water models have melting points that compare quite
339     favorably with the experimental value of 273~K. The unfortunate
340     aspect of this result is that this phase change occurs between
341     Ice-{\it i} and the liquid state rather than ice I$_h$ and the liquid
342     state. These results do not contradict other studies. Studies of ice
343     I$_h$ using TIP4P predict a $T_m$ ranging from 191 to 238~K
344     (differences being attributed to choice of interaction truncation and
345     different ordered and disordered molecular
346     arrangements).\cite{Nada03,Vlot99,Gao00,Sanz04} If the presence of ice
347     B and Ice-{\it i} were omitted, a $T_\textrm{m}$ value around 200~K
348     would be predicted from this work. However, the $T_\textrm{m}$ from
349     Ice-{\it i} is calculated to be 262~K, indicating that these
350     simulation based structures ought to be included in studies probing
351     phase transitions with this model. Also of interest in these results
352     is that SSD/E does not exhibit a melting point at 1 atm but does
353     sublime at 355~K. This is due to the significant stability of
354     Ice-{\it i} over all other polymorphs for this particular model under
355     these conditions. While troubling, this behavior resulted in the
356     spontaneous crystallization of Ice-{\it i} which led us to investigate
357     this structure. These observations provide a warning that simulations
358     of SSD/E as a ``liquid'' near 300~K are actually metastable and run
359     the risk of spontaneous crystallization. However, when a longer
360     cutoff radius is used, SSD/E prefers the liquid state under standard
361     temperature and pressure.
362    
363     \section{Effects of Potential Truncation}
364    
365     \begin{figure}
366     \includegraphics[width=\linewidth]{./figures/cutoffChange.pdf}
367     \caption{Free energy as a function of cutoff radius for SSD/E, TIP3P,
368     SPC/E, SSD/RF with a reaction field, and the TIP3P and SPC/E models
369     with an added Ewald correction term. Error for the larger cutoff
370     points is equivalent to that observed at 9.0~\AA\ (see Table
371     \ref{tab:freeEnergy}). Data for ice I$_\textrm{c}$ with TIP3P using
372     both 12 and 13.5~\AA\ cutoffs were omitted because the crystal was
373     prone to distortion and melting at 200~K. Ice-$i^\prime$ is the
374     form of Ice-{\it i} used in the SPC/E simulations.}
375     \label{fig:incCutoff}
376     \end{figure}
377    
378     For the more computationally efficient water models, we have also
379     investigated the effect of potential truncation on the computed free
380     energies as a function of the cutoff radius. As seen in
381     Fig. \ref{fig:incCutoff}, the free energies of the ice polymorphs with
382     water models lacking a long-range correction show significant cutoff
383     dependence. In general, there is a narrowing of the free energy
384     differences while moving to greater cutoff radii. As the free
385     energies for the polymorphs converge, the stability advantage that
386     Ice-{\it i} exhibits is reduced. Adjacent to each of these plots are
387     results for systems with applied or estimated long-range corrections.
388     SSD/RF was parametrized for use with a reaction field, and the benefit
389     provided by this computationally inexpensive correction is apparent.
390     The free energies are largely independent of the size of the reaction
391     field cavity in this model, so small cutoff radii mimic bulk
392     calculations quite well under SSD/RF.
393    
394     Although TIP3P was parametrized for use without the Ewald summation,
395     we have estimated the effect of this method for computing long-range
396     electrostatics for both TIP3P and SPC/E. This was accomplished by
397     calculating the potential energy of identical crystals both with and
398     without particle mesh Ewald (PME). Similar behavior to that observed
399     with reaction field is seen for both of these models. The free
400     energies show reduced dependence on cutoff radius and span a narrower
401     range for the various polymorphs. Like the dipolar water models,
402     TIP3P displays a relatively constant preference for the Ice-{\it i}
403     polymorph. Crystal preference is much more difficult to determine for
404     SPC/E. Without a long-range correction, each of the polymorphs
405     studied assumes the role of the preferred polymorph under different
406     cutoff radii. The inclusion of the Ewald correction flattens and
407     narrows the gap in free energies such that the polymorphs are
408     isoenergetic within statistical uncertainty. This suggests that other
409     conditions, such as the density in fixed-volume simulations, can
410     influence the polymorph expressed upon crystallization.
411    
412     \section{Expanded Results Using Damped Shifted Force Electrostatics}
413    
414     In chapter \ref{chap:electrostatics}, we discussed in detail a
415     pairwise method for handling electrostatics (shifted force, {\sc sf})
416     that can be used as a simple and efficient replacement for the Ewald
417     summation. Answering the question of the free energies of these ice
418     polymorphs with varying water models would be an interesting
419     application of this technique. To this end, we set up thermodynamic
420     integrations of all of the previously discussed ice polymorphs using
421     the {\sc sf} technique with a cutoff radius of 12~\AA\ and an $\alpha$
422     of 0.2125~\AA . These calculations were performed on TIP5P-E and
423     TIP4P-Ew (variants of the root models optimized for the Ewald
424     summation) as well as SPC/E, SSD/RF, and TRED (see section
425     \ref{sec:tredWater}).
426    
427     \begin{table}
428     \centering
429     \caption{HELMHOLTZ FREE ENERGIES OF ICE POLYMORPHS USING THE DAMPED
430     SHIFTED FORCE CORRECTION}
431     \begin{tabular}{ lccccc }
432     \toprule
433     \toprule
434     Model & I$_\textrm{h}$ & I$_\textrm{c}$ & B & Ice-$i$ & Ice-$i^\prime$ \\
435     \cmidrule(lr){2-6}
436     & \multicolumn{5}{c}{(kcal mol$^{-1}$)} \\
437     \midrule
438 chrisfen 3004 TIP5P-E & -11.98(4) & -11.96(4) & & - & -11.95(3) \\
439     TIP4P-Ew & -13.11(3) & -13.09(3) & -12.97(3) & - & -12.98(3) \\
440     SPC/E & -12.99(3) & -13.00(3) & -13.03(3) & - & -12.99(3) \\
441 chrisfen 3001 SSD/RF & -11.83(3) & -11.66(4) & -12.32(3) & -12.39(3) & - \\
442     TRED & -12.61(3) & -12.43(3) & -12.89(3) & -13.12(3) & - \\
443 chrisfen 2987 \end{tabular}
444     \label{tab:dampedFreeEnergy}
445     \end{table}
446 chrisfen 3001 The results of these calculations in table \ref{tab:dampedFreeEnergy}
447     show similar behavior to the Ewald results in figure
448     \ref{fig:incCutoff}, at least for SSD/RF and SPC/E which are present
449     in both. The ice polymorph Helmholtz free energies for SSD/RF order in
450     the same fashion; however Ice-$i$ and ice B are quite a bit closer in
451     free energy (nearly isoenergetic). The free energy differences between
452     ice polymorphs for TRED water parallel SSD/RF, with the exception that
453 chrisfen 3004 ice B is destabilized such that it is not very close to Ice-$i$. The
454     SPC/E results really show the near isoenergetic behavior when using
455     the electrostatics correction. Ice B has the lowest Helmholtz free
456     energy; however, all the polymorph results overlap within error.
457 chrisfen 2987
458 chrisfen 3004 The most interesting results from these calculations come from the
459     more expensive TIP4P-Ew and TIP5P-E results. Both of these models were
460     optimized for use with an electrostatic correction and are
461     geometrically arranged to mimic water following two different
462     ideas. In TIP5P-E, the primary location for the negative charge in the
463     molecule is assigned to the lone-pairs of the oxygen, while TIP4P-Ew
464     places the negative charge near the center-of-mass along the H-O-H
465     bisector. There is some debate as to which is the proper choice for
466     the negative charge location, and this has in part led to a six-site
467     water model that balances both of these options.\cite{Vega05,Nada03}
468     The limited results in table \ref{tab:dampedFreeEnergy} support the
469     results of Vega {\it et al.}, which indicate the TIP4P charge location
470     geometry is more physically valid.\cite{Vega05} With the TIP4P-Ew
471     water model, the experimentally observed polymorph (ice
472     I$_\textrm{h}$) is the preferred form with ice I$_\textrm{c}$ slightly
473     higher in energy, though overlapping within error, and the less
474     realistic ice B and Ice-$i^\prime$ are destabilized relative to these
475     polymorphs. TIP5P-E shows similar behavior to SPC/E, where there is no
476     real free energy distinction between the various polymorphs and lend
477     credence to other results indicating the preferred form of TIP5P at
478     1~atm is a structure similar to ice B.\cite{Yamada02,Vega05,Abascal05}
479     These results indicate that TIP4P-Ew is a better mimic of real water
480     than these other models when studying crystallization and solid forms
481     of water.
482    
483 chrisfen 2987 \section{Conclusions}
484    
485     In this work, thermodynamic integration was used to determine the
486     absolute free energies of several ice polymorphs. The new polymorph,
487 chrisfen 3016 Ice-$i$ was observed to be the stable crystalline state for {\it
488 chrisfen 2987 all} the water models when using a 9.0~\AA\ cutoff. However, the free
489     energy partially depends on simulation conditions (particularly on the
490 chrisfen 3016 choice of long range correction method). Regardless, Ice-$i$ was
491 chrisfen 2987 still observed to be a stable polymorph for all of the studied water
492     models.
493    
494     So what is the preferred solid polymorph for simulated water? As
495     indicated above, the answer appears to be dependent both on the
496     conditions and the model used. In the case of short cutoffs without a
497 chrisfen 3016 long-range interaction correction, Ice-$i$ and Ice-$i^\prime$ have
498 chrisfen 2987 the lowest free energy of the studied polymorphs with all the models.
499     Ideally, crystallization of each model under constant pressure
500     conditions, as was done with SSD/E, would aid in the identification of
501     their respective preferred structures. This work, however, helps
502     illustrate how studies involving one specific model can lead to
503     insight about important behavior of others.
504    
505     We also note that none of the water models used in this study are
506 chrisfen 3016 polarizable or flexible models. It is entirely possible that the
507     polarizability of real water makes Ice-$i$ substantially less stable
508     than ice I$_\textrm{h}$. The dipole moment of the water molecules
509     increases as the system becomes more condensed, and the increasing
510     dipole moment should destabilize the tetramer structures in
511     Ice-$i$. Right now, using TIP4P-Ew with an electrostatic correction
512     gives the proper thermodynamically preferred state, and we recommend
513     this arrangement for study of crystallization processes if the
514     computational cost increase that comes with including polarizability
515     is an issue.
516 chrisfen 2987
517 chrisfen 3016 Finally, due to the stability of Ice-$i$ in the investigated
518 chrisfen 2987 simulation conditions, the question arises as to possible experimental
519     observation of this polymorph. The rather extensive past and current
520     experimental investigation of water in the low pressure regime makes
521     us hesitant to ascribe any relevance to this work outside of the
522     simulation community. It is for this reason that we chose a name for
523     this polymorph which involves an imaginary quantity. That said, there
524     are certain experimental conditions that would provide the most ideal
525     situation for possible observation. These include the negative
526     pressure or stretched solid regime, small clusters in vacuum
527     deposition environments, and in clathrate structures involving small
528     non-polar molecules. For the purpose of comparison with experimental
529     results, we have calculated the oxygen-oxygen pair correlation
530     function, $g_\textrm{OO}(r)$, and the structure factor, $S(\vec{q})$
531     for the two Ice-{\it i} variants (along with example ice
532     I$_\textrm{h}$ and I$_\textrm{c}$ plots) at 77~K, and they are shown in
533     figures \ref{fig:gofr} and \ref{fig:sofq} respectively. It is
534     interesting to note that the structure factors for Ice-$i^\prime$ and
535     Ice-I$_c$ are quite similar. The primary differences are small peaks
536     at 1.125, 2.29, and 2.53~\AA$^{-1}$, so particular attention to these
537     regions would be needed to identify the new $i^\prime$ variant from
538     the I$_\textrm{c}$ polymorph.
539    
540    
541     \begin{figure}
542     \includegraphics[width=\linewidth]{./figures/iceGofr.pdf}
543     \caption{Radial distribution functions of Ice-{\it i} and ice
544     I$_\textrm{c}$ calculated from from simulations of the SSD/RF water
545     model at 77~K.}
546     \label{fig:gofr}
547     \end{figure}
548    
549     \begin{figure}
550     \includegraphics[width=\linewidth]{./figures/sofq.pdf}
551     \caption{Predicted structure factors for Ice-{\it i} and ice
552     I$_\textrm{c}$ at 77~K. The raw structure factors have been
553     convoluted with a gaussian instrument function (0.075~\AA$^{-1}$
554     width) to compensate for the truncation effects in our finite size
555     simulations. The labeled peaks compared favorably with ``spurious''
556     peaks observed in experimental studies of amorphous solid
557     water.\cite{Bizid87}}
558     \label{fig:sofq}
559     \end{figure}
560