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@string{jacs = {J. Am. Chem. Soc.}} |
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@string{jcc = {J. Comput. Chem.}} |
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@string{jcc = {J. Comp. Chem.}} |
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@string{jcp = {J. Chem. Phys.}} |
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@string{rmp = {Rev. Mod. Phys.}} |
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@article{Harvey98, |
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Author = {S.~C. Harvey and R.~K.-Z. Tan and T.~E. {Cheatham III}}, |
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Date-Added = {2006-09-07 00:53:34 -0400}, |
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Date-Modified = {2006-09-07 00:55:37 -0400}, |
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Journal = {J. Comp. Chem.}, |
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Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Harvey_FlyingIceCube_98.pdf}, |
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Number = {7}, |
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Pages = {726-740}, |
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Title = {The Flying Ice Cube: \uppercase{V}elocity Rescaling in Molecular Dynamics Leads to Violation of Energy Equipartition}, |
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Volume = {19}, |
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Year = {1998}} |
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@article{Verlet68, |
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Author = {L. Verlet}, |
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Date-Added = {2006-09-06 12:19:09 -0400}, |
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Date-Modified = {2006-09-06 12:21:04 -0400}, |
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Journal = {Phys. Rev.}, |
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Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Verlet_EqCorrFunc_67.pdf}, |
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Number = {1}, |
67 |
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Pages = {201-214}, |
68 |
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Title = {Computer "Experiments" on Classical Fluids. \uppercase{II. E}quilibrium Correlation Functions}, |
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Volume = {165}, |
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Year = {1968}} |
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@article{Verlet67, |
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Author = {L. Verlet}, |
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Date-Added = {2006-09-06 12:16:19 -0400}, |
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Date-Modified = {2006-09-06 12:18:57 -0400}, |
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Journal = {Phys. Rev.}, |
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Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Verlet_ClassicalFluids_67.pdf}, |
78 |
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Number = {1}, |
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Pages = {98-103}, |
80 |
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Title = {Computer "Experiments" on Classical Fluids. \uppercase{I. T}hermodynamic Properties of \uppercase{L}ennard-\uppercase{J}ones Molecules}, |
81 |
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Volume = {159}, |
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Year = {1967}} |
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|
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@article{Thompson83, |
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Author = {C.~J. Thompson}, |
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Date-Added = {2006-09-06 11:59:49 -0400}, |
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Date-Modified = {2006-09-06 12:02:07 -0400}, |
88 |
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Journal = {CCP5 Quarterly}, |
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Pages = {20-28}, |
90 |
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Title = {Use of neighbor lists in molecular dynamics}, |
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Volume = {8}, |
92 |
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Year = {1983}} |
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@article{Krautler01, |
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Author = {V. Kr\"{a}utler and W.~F. {van Gunsteren} and P.~H. H\"{u}nenberger}, |
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Date-Added = {2006-09-04 00:17:15 -0400}, |
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Date-Modified = {2006-09-04 00:29:36 -0400}, |
98 |
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Journal = {J. Comp. Chem.}, |
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Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Krautler_FastSHAKE_01.pdf}, |
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Number = {5}, |
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Pages = {501-508}, |
102 |
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Title = {A Fast \uppercase{SHAKE} Algorithm to Solve Distance Constraint Equations for Small Molecules in Molecular Dynamics Simulations}, |
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Volume = {22}, |
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Year = {2001}} |
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@article{Swope82, |
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Author = {W.~C. Swope and H.~C. Andersen and P.~H. Berens and K.~R. Wilson}, |
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Date-Added = {2006-09-03 21:47:42 -0400}, |
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Date-Modified = {2006-09-03 21:50:26 -0400}, |
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Journal = {J. Chem. Phys.}, |
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Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Swope_VelocityVerlet_82.pdf}, |
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Number = {1}, |
113 |
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Pages = {637-649}, |
114 |
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Title = {A computer simulation method for the calculation of equilibrium constants for the formation of physical clusters of molecules: \uppercase{A}pplication to small water clusters}, |
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Volume = {76}, |
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Year = {1982}} |
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@article{Trotter59, |
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Author = {H.~F. Trotter}, |
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Date-Added = {2006-09-03 18:05:35 -0400}, |
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Date-Modified = {2006-09-03 18:07:32 -0400}, |
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Journal = {Proc. Am. Math Soc.}, |
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Pages = {545-551}, |
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Title = {On the product of Semi-Groups of Operators}, |
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Volume = {10}, |
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Year = {1959}} |
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@article{Barojas73, |
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Author = {J. Barojas and D. Levesque and B. Quentrec}, |
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Date-Added = {2006-09-03 14:32:02 -0400}, |
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Date-Modified = {2006-09-03 14:34:00 -0400}, |
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Journal = {Phys. Rev. A}, |
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Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/OldPapers/Barojas_EulerSwitch_73.pdf}, |
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Number = {3}, |
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Pages = {1092-1105}, |
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Title = {Simulation of Diatomic Homonuclear Liquids}, |
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Volume = {7}, |
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Year = {1973}} |
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@article{Mezei92, |
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Author = {M. Mezei}, |
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Date-Added = {2006-08-28 07:48:49 -0400}, |
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@article{Ryckaert77, |
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Author = {J.-P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen}, |
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Date-Added = {2006-08-06 17:05:44 -0400}, |
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Date-Modified = {2006-08-06 17:08:35 -0400}, |
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Date-Modified = {2006-09-05 22:29:01 -0400}, |
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Doi = {10.1016/0021-9991(77)90098-5}, |
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Journal = {J. Comput. Phys.}, |
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Journal = {J. Comp. Phys.}, |
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Month = {March}, |
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Number = {3}, |
414 |
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Pages = {327-341}, |
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@article{Rokhlin85, |
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Author = {V. Rokhlin}, |
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Date-Added = {2006-03-19 20:02:25 -0500}, |
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Date-Modified = {2006-03-19 20:04:19 -0500}, |
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Date-Modified = {2006-09-05 22:30:02 -0400}, |
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Doi = {10.1016/0021-9991(85)90002-6}, |
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Journal = {J. Comput. Phys.}, |
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Journal = {J. Comp. Phys.}, |
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Month = {September}, |
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Number = {2}, |
707 |
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Pages = {187-207}, |
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@article{Steinbach94, |
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Author = {P.~J. Steinbach and B.~R. Brooks}, |
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Date-Added = {2006-03-12 19:26:45 -0500}, |
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Date-Modified = {2006-03-12 19:29:43 -0500}, |
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Date-Modified = {2006-09-05 22:30:22 -0400}, |
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Doi = {10.1002/jcc.540150702}, |
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Journal = {J. Comput. Chem.}, |
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Journal = {J. Comp. Chem.}, |
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Number = {7}, |
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Pages = {667-683}, |
1091 |
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Title = {New spherical-cutoff methods for long-range forces in macromolecular simulation}, |
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Volume = 198, |
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Year = 1993} |
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@book{Frenkel96, |
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@book{Frenkel02, |
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Address = {New York}, |
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Author = {D. Frenkel and B. Smit}, |
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Date-Modified = {2006-07-18 15:02:21 -0400}, |
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Date-Modified = {2006-09-05 18:18:32 -0400}, |
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Edition = {2nd}, |
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Publisher = {Academic Press}, |
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Title = {Understanding Molecular Simulation: \uppercase{F}rom Algorithms to Applications}, |
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Year = 1996} |
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Year = 2002} |
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@article{Dullweber97, |
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Author = {A. Dullweber and B. Leimkuhler and R. McLachlan}, |
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@article{Andersen83, |
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Author = {H.~C. Andersen}, |
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Date-Modified = {2006-07-18 14:59:26 -0400}, |
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Journal = {Journal of Computational Physics}, |
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Date-Modified = {2006-09-05 22:28:45 -0400}, |
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Journal = {J. Comp. Phys.}, |
2686 |
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Pages = {24-34}, |
2687 |
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Title = {\uppercase{RATTLE: A} Velocity Version of the Shake Algorithm for Molecular Dynamics Calculations}, |
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Volume = 52, |
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@article{Smith96, |
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Author = {W. Smith and T. Forester}, |
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Date-Modified = {2006-07-18 14:56:36 -0400}, |
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Date-Modified = {2006-09-07 14:48:19 -0400}, |
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Journal = {J. Molec. Graphics.}, |
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Number = 3, |
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Pages = {136-141}, |
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Title = {\uppercase{DL_POLY_2.0: A} general-purpose parallel molecular dynamics simulation package}, |
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Title = {\uppercase{DL\_POLY\_2.0: A} general-purpose parallel molecular dynamics simulation package}, |
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Volume = 14, |
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Year = 1996} |
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