--- trunk/chrisDissertation/dissertation.bib	2006/09/04 16:36:51	3000
+++ trunk/chrisDissertation/dissertation.bib	2006/09/07 20:42:27	3001
@@ -2,7 +2,7 @@
 %% http://bibdesk.sourceforge.net/
 
 
-%% Created for Chris Fennell at 2006-08-28 10:33:08 -0400 
+%% Created for Chris Fennell at 2006-09-07 14:48:19 -0400 
 
 
 %% Saved with string encoding Western (ASCII) 
@@ -16,7 +16,7 @@
 
 @string{jacs = {J. Am. Chem. Soc.}}
 
-@string{jcc = {J. Comput. Chem.}}
+@string{jcc = {J. Comp. Chem.}}
 
 @string{jcp = {J. Chem. Phys.}}
 
@@ -45,6 +45,98 @@
 @string{rmp = {Rev. Mod. Phys.}}
 
 
+@article{Harvey98,
+	Author = {S.~C. Harvey and R.~K.-Z. Tan and T.~E. {Cheatham III}},
+	Date-Added = {2006-09-07 00:53:34 -0400},
+	Date-Modified = {2006-09-07 00:55:37 -0400},
+	Journal = {J. Comp. Chem.},
+	Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Harvey_FlyingIceCube_98.pdf},
+	Number = {7},
+	Pages = {726-740},
+	Title = {The Flying Ice Cube: \uppercase{V}elocity Rescaling in Molecular Dynamics Leads to Violation of Energy Equipartition},
+	Volume = {19},
+	Year = {1998}}
+
+@article{Verlet68,
+	Author = {L. Verlet},
+	Date-Added = {2006-09-06 12:19:09 -0400},
+	Date-Modified = {2006-09-06 12:21:04 -0400},
+	Journal = {Phys. Rev.},
+	Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Verlet_EqCorrFunc_67.pdf},
+	Number = {1},
+	Pages = {201-214},
+	Title = {Computer "Experiments" on Classical Fluids. \uppercase{II. E}quilibrium Correlation Functions},
+	Volume = {165},
+	Year = {1968}}
+
+@article{Verlet67,
+	Author = {L. Verlet},
+	Date-Added = {2006-09-06 12:16:19 -0400},
+	Date-Modified = {2006-09-06 12:18:57 -0400},
+	Journal = {Phys. Rev.},
+	Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Verlet_ClassicalFluids_67.pdf},
+	Number = {1},
+	Pages = {98-103},
+	Title = {Computer "Experiments" on Classical Fluids. \uppercase{I. T}hermodynamic Properties of \uppercase{L}ennard-\uppercase{J}ones Molecules},
+	Volume = {159},
+	Year = {1967}}
+
+@article{Thompson83,
+	Author = {C.~J. Thompson},
+	Date-Added = {2006-09-06 11:59:49 -0400},
+	Date-Modified = {2006-09-06 12:02:07 -0400},
+	Journal = {CCP5 Quarterly},
+	Pages = {20-28},
+	Title = {Use of neighbor lists in molecular dynamics},
+	Volume = {8},
+	Year = {1983}}
+
+@article{Krautler01,
+	Author = {V. Kr\"{a}utler and W.~F. {van Gunsteren} and P.~H. H\"{u}nenberger},
+	Date-Added = {2006-09-04 00:17:15 -0400},
+	Date-Modified = {2006-09-04 00:29:36 -0400},
+	Journal = {J. Comp. Chem.},
+	Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Krautler_FastSHAKE_01.pdf},
+	Number = {5},
+	Pages = {501-508},
+	Title = {A Fast \uppercase{SHAKE} Algorithm to Solve Distance Constraint Equations for Small Molecules in Molecular Dynamics Simulations},
+	Volume = {22},
+	Year = {2001}}
+
+@article{Swope82,
+	Author = {W.~C. Swope and H.~C. Andersen and P.~H. Berens and K.~R. Wilson},
+	Date-Added = {2006-09-03 21:47:42 -0400},
+	Date-Modified = {2006-09-03 21:50:26 -0400},
+	Journal = {J. Chem. Phys.},
+	Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Swope_VelocityVerlet_82.pdf},
+	Number = {1},
+	Pages = {637-649},
+	Title = {A computer simulation method for the calculation of equilibrium constants for the formation of physical clusters of molecules: \uppercase{A}pplication to small water clusters},
+	Volume = {76},
+	Year = {1982}}
+
+@article{Trotter59,
+	Author = {H.~F. Trotter},
+	Date-Added = {2006-09-03 18:05:35 -0400},
+	Date-Modified = {2006-09-03 18:07:32 -0400},
+	Journal = {Proc. Am. Math Soc.},
+	Pages = {545-551},
+	Title = {On the product of Semi-Groups of Operators},
+	Volume = {10},
+	Year = {1959}}
+
+@article{Barojas73,
+	Author = {J. Barojas and D. Levesque and B. Quentrec},
+	Date-Added = {2006-09-03 14:32:02 -0400},
+	Date-Modified = {2006-09-03 14:34:00 -0400},
+	Journal = {Phys. Rev. A},
+	Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/OldPapers/Barojas_EulerSwitch_73.pdf},
+	Number = {3},
+	Pages = {1092-1105},
+	Title = {Simulation of Diatomic Homonuclear Liquids},
+	Volume = {7},
+	Year = {1973}}
+
 @article{Mezei92,
 	Author = {M. Mezei},
 	Date-Added = {2006-08-28 07:48:49 -0400},
@@ -314,9 +406,9 @@
 @article{Ryckaert77,
 	Author = {J.-P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen},
 	Date-Added = {2006-08-06 17:05:44 -0400},
-	Date-Modified = {2006-08-06 17:08:35 -0400},
+	Date-Modified = {2006-09-05 22:29:01 -0400},
 	Doi = {10.1016/0021-9991(77)90098-5},
-	Journal = {J. Comput. Phys.},
+	Journal = {J. Comp. Phys.},
 	Month = {March},
 	Number = {3},
 	Pages = {327-341},
@@ -607,9 +699,9 @@
 @article{Rokhlin85,
 	Author = {V. Rokhlin},
 	Date-Added = {2006-03-19 20:02:25 -0500},
-	Date-Modified = {2006-03-19 20:04:19 -0500},
+	Date-Modified = {2006-09-05 22:30:02 -0400},
 	Doi = {10.1016/0021-9991(85)90002-6},
-	Journal = {J. Comput. Phys.},
+	Journal = {J. Comp. Phys.},
 	Month = {September},
 	Number = {2},
 	Pages = {187-207},
@@ -991,9 +1083,9 @@
 @article{Steinbach94,
 	Author = {P.~J. Steinbach and B.~R. Brooks},
 	Date-Added = {2006-03-12 19:26:45 -0500},
-	Date-Modified = {2006-03-12 19:29:43 -0500},
+	Date-Modified = {2006-09-05 22:30:22 -0400},
 	Doi = {10.1002/jcc.540150702},
-	Journal = {J. Comput. Chem.},
+	Journal = {J. Comp. Chem.},
 	Number = {7},
 	Pages = {667-683},
 	Title = {New spherical-cutoff methods for long-range forces in macromolecular simulation},
@@ -2131,13 +2223,14 @@
 	Volume = 198,
 	Year = 1993}
 
-@book{Frenkel96,
+@book{Frenkel02,
 	Address = {New York},
 	Author = {D. Frenkel and B. Smit},
-	Date-Modified = {2006-07-18 15:02:21 -0400},
+	Date-Modified = {2006-09-05 18:18:32 -0400},
+	Edition = {2nd},
 	Publisher = {Academic Press},
 	Title = {Understanding Molecular Simulation: \uppercase{F}rom Algorithms to Applications},
-	Year = 1996}
+	Year = 2002}
 
 @article{Dullweber97,
 	Author = {A. Dullweber and B. Leimkuhler and R. McLachlan},
@@ -2588,8 +2681,8 @@
 
 @article{Andersen83,
 	Author = {H.~C. Andersen},
-	Date-Modified = {2006-07-18 14:59:26 -0400},
-	Journal = {Journal of Computational Physics},
+	Date-Modified = {2006-09-05 22:28:45 -0400},
+	Journal = {J. Comp. Phys.},
 	Pages = {24-34},
 	Title = {\uppercase{RATTLE: A} Velocity Version of the Shake Algorithm for Molecular Dynamics Calculations},
 	Volume = 52,
@@ -2788,11 +2881,11 @@
 
 @article{Smith96,
 	Author = {W. Smith and T. Forester},
-	Date-Modified = {2006-07-18 14:56:36 -0400},
+	Date-Modified = {2006-09-07 14:48:19 -0400},
 	Journal = {J. Molec. Graphics.},
 	Number = 3,
 	Pages = {136-141},
-	Title = {\uppercase{DL_POLY_2.0: A} general-purpose parallel molecular dynamics simulation package},
+	Title = {\uppercase{DL\_POLY\_2.0: A} general-purpose parallel molecular dynamics simulation package},
 	Volume = 14,
 	Year = 1996}