--- trunk/electrostaticMethodsPaper/electrostaticMethods.bib 2006/03/13 22:59:52 2612 +++ trunk/electrostaticMethodsPaper/electrostaticMethods.bib 2006/03/16 15:03:20 2630 @@ -2,7 +2,7 @@ %% http://bibdesk.sourceforge.net/ -%% Created for Chris Fennell at 2006-03-13 17:01:21 -0500 +%% Created for Chris Fennell at 2006-03-16 10:02:01 -0500 %% Saved with string encoding Western (ASCII) @@ -43,7 +43,102 @@ @STRING{prl = "Phys. Rev. Lett."} @STRING{rmp = "Rev. Mod. Phys."} + + +@article{Weber00, + Author = {W. Weber and P.~H. H\"{u}nenberger and J.~A. McCammon}, + Date-Added = {2006-03-16 09:49:22 -0500}, + Date-Modified = {2006-03-16 09:51:17 -0500}, + Doi = {10.1021/jp9937757}, + Journal = {J. Phys. Chem. B}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicityMD_00.pdf}, + Number = {15}, + Pages = {3668-3675}, + Title = {Molecular Dynamics Simulations of a Polyalanine Octapeptide under Ewald Boundary Conditions: Influence of Artificial Periodicity on Peptide Conformation}, + Volume = {104}, + Year = {2000}} + +@article{Hunenberger99, + Author = {P.~H. H\"{u}nenberger and J.~A. McCammon}, + Date-Added = {2006-03-16 09:45:10 -0500}, + Date-Modified = {2006-03-16 09:49:15 -0500}, + Journal = {Biophys. Chem.}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicity_99.pdf}, + Pages = {69-88}, + Title = {Effect of artificial periodicity in simulations of biomolecules under Ewald boundary conditions: a continuum electrostatics study}, + Volume = {78}, + Year = {1999}} + +@article{Petersen95, + Author = {H.~G. 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Phys.}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Rahman_MDWater_71.pdf}, + Month = {October}, + Number = {7}, + Pages = {3336-3359}, + Title = {Molecular Dynamics Study of Liquid Water}, + Volume = {55}, + Year = {1971}} +@article{Andrea83, + Author = {T.~A. Andrea and W.~C. Swope and H.~C. Andersen}, + Date-Added = {2006-03-15 15:16:12 -0500}, + Date-Modified = {2006-03-15 15:18:10 -0500}, + Journal = {J. Chem. Phys.}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Andrea_LongRangeForcesInWater_83.pdf}, + Number = {9}, + Pages = {4576-4584}, + Title = {The role of long ranged forces in determining the structure and properties of liquid water}, + Volume = {79}, + Year = {1983}} @article{Brush66, Author = {S.~G. Brush and H.~L. Sahlin and E. Teller}, @@ -1503,8 +1598,9 @@ @article{Darden93, Author = {T. Darden and D. York and L. Pedersen}, - Date-Modified = {2006-02-15 10:09:52 -0500}, + Date-Modified = {2006-03-16 08:37:25 -0500}, Journal = {Journal of Chemical Physics}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Darden_ParticleMeshEwald_93.pdf}, Number = 12, Pages = {10089-10092}, Title = {Particle mesh Ewald: An $N \log N$ method for Ewald sums in large systems}, @@ -1912,10 +2008,10 @@ @article{Marrink03, Author = {S.~J. Marrink and A.~E. Mark}, - Date-Modified = {2006-02-15 10:28:41 -0500}, + Date-Modified = {2006-03-16 09:54:52 -0500}, Journal = {J. Am. Chem. Soc.}, Pages = {15233-15242}, - Title = {Molecular Dynaimcs Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles}, + Title = {Molecular Dynamics Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles}, Volume = 125, Year = 2003}