--- trunk/electrostaticMethodsPaper/electrostaticMethods.bib 2006/03/19 02:48:19 2637 +++ trunk/electrostaticMethodsPaper/electrostaticMethods.bib 2006/03/24 02:39:59 2667 @@ -2,7 +2,7 @@ %% http://bibdesk.sourceforge.net/ -%% Created for Chris Fennell at 2006-03-18 21:00:37 -0500 +%% Created for Chris Fennell at 2006-03-23 13:48:37 -0500 %% Saved with string encoding Western (ASCII) @@ -43,7 +43,73 @@ @STRING{prl = "Phys. Rev. Lett."} @STRING{rmp = "Rev. Mod. Phys."} + + +@article{Kolafa92, + Author = {J. Kolafa and J.~W. Perram}, + Date-Added = {2006-03-21 09:41:58 -0500}, + Date-Modified = {2006-03-21 09:42:47 -0500}, + Journal = {Mol. Simul.}, + Pages = {351-368}, + Title = {Cutoff Errors in the Ewald. Summation Formulae for Point Charge Systems}, + Volume = {9}, + Year = {1992}} + +@article{Karasawa89, + Author = {N. Karasawa and W.~A. {Goddard III}}, + Date-Added = {2006-03-21 09:11:44 -0500}, + Date-Modified = {2006-03-21 09:13:00 -0500}, + Journal = {J. Phys. Chem.}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Karasawa_LatticSumConvergence_89.pdf}, + Pages = {7320-7327}, + Title = {Acceleration of Convergence for Lattice Sums}, + Volume = {93}, + Year = {1989}} + +@article{Roux99, + Author = {B. Roux and T. Simonson}, + Date-Added = {2006-03-19 20:10:18 -0500}, + Date-Modified = {2006-03-19 20:12:10 -0500}, + Journal = {Biophys. Chem.}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Roux_ImplicitSolventModels_99.pdf}, + Pages = {1-20}, + Title = {Implicit solvent models}, + Volume = {78}, + Year = {1999}} + +@article{Rokhlin85, + Author = {V. Rokhlin}, + Date-Added = {2006-03-19 20:02:25 -0500}, + Date-Modified = {2006-03-19 20:04:19 -0500}, + Doi = {10.1016/0021-9991(85)90002-6}, + Journal = {J. Comput. Phys.}, + Month = {September}, + Number = {2}, + Pages = {187-207}, + Title = {Rapid solution of integral equations of classical potential theory}, + Volume = {60}, + Year = {1985}} +@article{Grossfield00, + Author = {A. Grossfield and J. Sachs and T.~B. Woolf}, + Date-Added = {2006-03-19 19:52:19 -0500}, + Date-Modified = {2006-03-19 19:54:14 -0500}, + Journal = {Proteins}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Membrane/Grossfield_dipoleLatticeMembrane_00.pdf}, + Pages = {211-223}, + Title = {Dipole Lattice Membrane Model for Protein Calculations}, + Volume = {41}, + Year = {2000}} + +@article{Born20, + Author = {M. Born}, + Date-Added = {2006-03-19 18:05:01 -0500}, + Date-Modified = {2006-03-19 18:07:42 -0500}, + Journal = {Z. Physik}, + Pages = {45-48}, + Title = {Volumen und hydratationswame der ionen}, + Volume = {1}, + Year = {1920}} @article{Luty96, Author = {B.~A. Luty and W.~F. {van~Gunsteren}}, @@ -213,9 +279,9 @@ @article{Sagui99, Author = {C. Sagui and T.~A. Darden}, Date-Added = {2006-03-17 18:27:01 -0500}, - Date-Modified = {2006-03-17 18:29:36 -0500}, + Date-Modified = {2006-03-23 13:48:12 -0500}, Journal = {Annu. Rev. Biophys. Biomol. Struct.}, - Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/toCite/Darden_electrostaticInBiomolecules_99.pdf}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Darden_electrostaticInBiomolecules_99.pdf}, Pages = {155-179}, Title = {Molecular Dynamics Simulations of Biomolecules: Long-Range Electrostatic Effects}, Volume = {28}, @@ -302,7 +368,7 @@ Year = {1995}} @article{Barker73, - Author = {J.~A. Barker and R.~O. Watts }, + Author = {J.~A. Barker and R.~O. Watts}, Date-Added = {2006-03-15 18:58:17 -0500}, Date-Modified = {2006-03-18 11:36:56 -0500}, Journal = {Mol. Phys.}, @@ -422,9 +488,9 @@ @article{Essmann95, Author = {U. Essmann and L. Perera and M.~L. Berkowitz and T. Darden and H. Lee and L.~G. Pedersen}, Date-Added = {2006-03-05 12:25:25 -0500}, - Date-Modified = {2006-03-05 12:29:07 -0500}, + Date-Modified = {2006-03-23 13:47:48 -0500}, Journal = {J. Chem. Phys.}, - Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/toCite/Essmann_SmoothPME_95.pdf}, + Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Essmann_SmoothPME_95.pdf}, Number = {19}, Pages = {8577-8593}, Title = {A smooth particle mesh Ewald method},