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ewald is a changin'

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1 %\documentclass[prb,aps,twocolumn,tabularx]{revtex4}
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26 \begin{document}
27
28 \title{Is the Ewald Summation necessary? Pairwise alternatives to the accepted standard for long-range electrostatics}
29
30 \author{Christopher J. Fennell and J. Daniel Gezelter\footnote{Corresponding author. \ Electronic mail:
31 gezelter@nd.edu} \\
32 Department of Chemistry and Biochemistry\\
33 University of Notre Dame\\
34 Notre Dame, Indiana 46556}
35
36 \date{\today}
37
38 \maketitle
39 \doublespacing
40
41 \nobibliography{}
42 \begin{abstract}
43 A new method for accumulating electrostatic interactions was derived
44 from the previous efforts described in \bibentry{Wolf99} and
45 \bibentry{Zahn02} as a possible replacement for lattice sum methods in
46 molecular simulations. Comparisons were performed with this and other
47 pairwise electrostatic summation techniques against the smooth
48 particle mesh Ewald (SPME) summation to see how well they reproduce
49 the energetics and dynamics of a variety of simulation types. The
50 newly derived Shifted-Force technique shows a remarkable ability to
51 reproduce the behavior exhibited in simulations using SPME with an
52 $\mathscr{O}(N)$ computational cost, equivalent to merely the
53 real-space portion of the lattice summation.
54
55 \end{abstract}
56
57 \newpage
58
59 %\narrowtext
60
61 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
62 % BODY OF TEXT
63 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
64
65 \section{Introduction}
66
67 In molecular simulations, proper accumulation of the electrostatic
68 interactions is considered one of the most essential and
69 computationally demanding tasks. The common molecular mechanics force
70 fields are founded on representation of the atomic sites centered on
71 full or partial charges shielded by Lennard-Jones type interactions.
72 This means that nearly every pair interaction involves an
73 charge-charge calculation. Coupled with $r^{-1}$ decay, the monopole
74 interactions quickly become a burden for molecular systems of all
75 sizes. For example, in small systems, the electrostatic pair
76 interaction may not have decayed appreciably within the box length
77 leading to an effect excluded from the pair interactions within a unit
78 box. In large systems, excessively large cutoffs need to be used to
79 accurately incorporate their effect, and since the computational cost
80 increases proportionally with the cutoff sphere, it quickly becomes an
81 impractical task to perform these calculations.
82
83 \subsection{The Ewald Sum}
84 The complete accumulation electrostatic interactions in a system with periodic boundary conditions (PBC) requires the consideration of the effect of all charges within a simulation box, as well as those in the periodic replicas,
85 \begin{equation}
86 V_\textrm{elec} = \frac{1}{2} {\sum_{\mathbf{n}}}^\prime \left[ \sum_{i=1}^N\sum_{j=1}^N \phi\left( \mathbf{r}_{ij} + L\mathbf{n},\bm{\Omega}_i,\bm{\Omega}_j\right) \right],
87 \label{eq:PBCSum}
88 \end{equation}
89 where the sum over $\mathbf{n}$ is a sum over all periodic box replicas
90 with integer coordinates $\mathbf{n} = (l,m,n)$, and the prime indicates
91 $i = j$ are neglected for $\mathbf{n} = 0$.\cite{deLeeuw80} Within the
92 sum, $N$ is the number of electrostatic particles, $\mathbf{r}_{ij}$ is
93 $\mathbf{r}_j - \mathbf{r}_i$, $L$ is the cell length, $\bm{\Omega}_{i,j}$ are
94 the Euler angles for $i$ and $j$, and $\phi$ is Poisson's equation
95 ($\phi(\mathbf{r}_{ij}) = q_i q_j |\mathbf{r}_{ij}|^{-1}$ for charge-charge
96 interactions). In the case of monopole electrostatics,
97 eq. (\ref{eq:PBCSum}) is conditionally convergent and is discontiuous
98 for non-neutral systems.
99
100 This electrostatic summation problem was originally studied by Ewald
101 for the case of an infinite crystal.\cite{Ewald21}. The approach he
102 took was to convert this conditionally convergent sum into two
103 absolutely convergent summations: a short-ranged real-space summation
104 and a long-ranged reciprocal-space summation,
105 \begin{equation}
106 \begin{split}
107 V_\textrm{elec} = \frac{1}{2}& \sum_{i=1}^N\sum_{j=1}^N \Biggr[ q_i q_j\Biggr( {\sum_{\mathbf{n}}}^\prime \frac{\textrm{erfc}\left( \alpha|\mathbf{r}_{ij}+\mathbf{n}|\right)}{|\mathbf{r}_{ij}+\mathbf{n}|} \\ &+ \frac{1}{\pi L^3}\sum_{\mathbf{k}\ne 0}\frac{4\pi^2}{|\mathbf{k}|^2} \exp{\left(-\frac{\pi^2|\mathbf{k}|^2}{\alpha^2}\right) \cos\left(\mathbf{k}\cdot\mathbf{r}_{ij}\right)}\Biggr)\Biggr] \\ &- \frac{\alpha}{\pi^{1/2}}\sum_{i=1}^N q_i^2 + \frac{2\pi}{3L^3}\left|\sum_{i=1}^N q_i\mathbf{r}_i\right|^2,
108 \end{split}
109 \label{eq:EwaldSum}
110 \end{equation}
111 where $\alpha$ is a damping parameter, or separation constant, with
112 units of \AA$^{-1}$, and $\mathbf{k}$ are the reciprocal vectors and
113 equal $2\pi\mathbf{n}/L^2$. The final two terms of
114 eq. (\ref{eq:EwaldSum}) are a particle-self term and a dipolar term
115 for interacting with a surrounding dielectric.\cite{Allen87} This
116 dipolar term was neglected in early applications in molecular
117 simulations,\cite{Brush66,Woodcock71} until it was introduced by de
118 Leeuw {\it et al.} to address situations where the unit cell has a
119 dipole moment and this dipole moment gets magnified through
120 replication of the periodic images.\cite{deLeeuw80} This term is zero
121 for systems where $\epsilon_{\rm S} = \infty$. Figure
122 \ref{fig:ewaldTime} shows how the Ewald sum has been applied over
123 time. Initially, due to the small size of systems, the entire
124 simulation box was replicated to convergence. Currently, we balance a
125 spherical real-space cutoff with the reciprocal sum and consider the
126 surrounding dielectric.
127 \begin{figure}
128 \centering
129 \includegraphics[width = \linewidth]{./ewaldProgression.pdf}
130 \caption{How the application of the Ewald summation has changed with
131 the increase in computer power. Initially, only small numbers of
132 particles could be studied, and the Ewald sum acted to replicate the
133 unit cell charge distribution out to convergence. Now, much larger
134 systems of charges are investigated with fixed distance cutoffs. The
135 calculated structure factor is used to sum out to great distance, and
136 a surrounding dielectric term is included.}
137 \label{fig:ewaldTime}
138 \end{figure}
139
140 The Ewald summation in the straight-forward form is an
141 $\mathscr{O}(N^2)$ algorithm. The separation constant $(\alpha)$
142 plays an important role in the computational cost balance between the
143 direct and reciprocal-space portions of the summation. The choice of
144 the magnitude of this value allows one to whether the real-space or
145 reciprocal space portion of the summation is an $\mathscr{O}(N^2)$
146 calcualtion, with the other being $\mathscr{O}(N)$.\cite{Sagui99} With
147 appropriate choice of $\alpha$ and thoughtful algorithm development,
148 this cost can be brought down to
149 $\mathscr{O}(N^{3/2})$.\cite{Perram88} The typical route taken to
150 accelerate the Ewald summation is to se
151
152 \subsection{The Wolf and Zahn Methods}
153 In a recent paper by Wolf \textit{et al.}, a procedure was outlined
154 for the accurate accumulation of electrostatic interactions in an
155 efficient pairwise fashion.\cite{Wolf99} Wolf \textit{et al.} observed
156 that the electrostatic interaction is effectively short-ranged in
157 condensed phase systems and that neutralization of the charge
158 contained within the cutoff radius is crucial for potential
159 stability. They devised a pairwise summation method that ensures
160 charge neutrality and gives results similar to those obtained with
161 the Ewald summation. The resulting shifted Coulomb potential
162 (Eq. \ref{eq:WolfPot}) includes image-charges subtracted out through
163 placement on the cutoff sphere and a distance-dependent damping
164 function (identical to that seen in the real-space portion of the
165 Ewald sum) to aid convergence
166 \begin{equation}
167 V_{\textrm{Wolf}}(r_{ij})= \frac{q_iq_j \textrm{erfc}(\alpha r_{ij})}{r_{ij}}-\lim_{r_{ij}\rightarrow R_\textrm{c}}\left\{\frac{q_iq_j \textrm{erfc}(\alpha r_{ij})}{r_{ij}}\right\}.
168 \label{eq:WolfPot}
169 \end{equation}
170 Eq. (\ref{eq:WolfPot}) is essentially the common form of a shifted
171 potential. However, neutralizing the charge contained within each
172 cutoff sphere requires the placement of a self-image charge on the
173 surface of the cutoff sphere. This additional self-term in the total
174 potential enabled Wolf {\it et al.} to obtain excellent estimates of
175 Madelung energies for many crystals.
176
177 In order to use their charge-neutralized potential in molecular
178 dynamics simulations, Wolf \textit{et al.} suggested taking the
179 derivative of this potential prior to evaluation of the limit. This
180 procedure gives an expression for the forces,
181 \begin{equation}
182 F_{\textrm{Wolf}}(r_{ij}) = q_i q_j\left\{\left[\frac{\textrm{erfc}\left(\alpha r_{ij}\right)}{r^2_{ij}}+\frac{2\alpha}{\pi^{1/2}}\frac{\exp{\left(-\alpha^2r_{ij}^2\right)}}{r_{ij}}\right]-\left[\frac{\textrm{erfc}\left(\alpha R_{\textrm{c}}\right)}{R_{\textrm{c}}^2}+\frac{2\alpha}{\pi^{1/2}}\frac{\exp{\left(-\alpha^2R_{\textrm{c}}^2\right)}}{R_{\textrm{c}}}\right]\right\},
183 \label{eq:WolfForces}
184 \end{equation}
185 that incorporates both image charges and damping of the electrostatic
186 interaction.
187
188 More recently, Zahn \textit{et al.} investigated these potential and
189 force expressions for use in simulations involving water.\cite{Zahn02}
190 In their work, they pointed out that the forces and derivative of
191 the potential are not commensurate. Attempts to use both
192 Eqs. (\ref{eq:WolfPot}) and (\ref{eq:WolfForces}) together will lead
193 to poor energy conservation. They correctly observed that taking the
194 limit shown in equation (\ref{eq:WolfPot}) {\it after} calculating the
195 derivatives gives forces for a different potential energy function
196 than the one shown in Eq. (\ref{eq:WolfPot}).
197
198 Zahn \textit{et al.} proposed a modified form of this ``Wolf summation
199 method'' as a way to use this technique in Molecular Dynamics
200 simulations. Taking the integral of the forces shown in equation
201 \ref{eq:WolfForces}, they proposed a new damped Coulomb
202 potential,
203 \begin{equation}
204 V_{\textrm{Zahn}}(r_{ij}) = q_iq_j\left\{\frac{\mathrm{erfc}\left(\alpha r_{ij}\right)}{r_{ij}}-\left[\frac{\mathrm{erfc}\left(\alpha R_\mathrm{c}\right)}{R_\mathrm{c}^2}+\frac{2\alpha}{\pi^{1/2}}\frac{\exp\left(-\alpha^2R_\mathrm{c}^2\right)}{R_\mathrm{c}}\right]\left(r_{ij}-R_\mathrm{c}\right)\right\}.
205 \label{eq:ZahnPot}
206 \end{equation}
207 They showed that this potential does fairly well at capturing the
208 structural and dynamic properties of water compared the same
209 properties obtained using the Ewald sum.
210
211 \subsection{Simple Forms for Pairwise Electrostatics}
212
213 The potentials proposed by Wolf \textit{et al.} and Zahn \textit{et
214 al.} are constructed using two different (and separable) computational
215 tricks: \begin{enumerate}
216 \item shifting through the use of image charges, and
217 \item damping the electrostatic interaction.
218 \end{enumerate} Wolf \textit{et al.} treated the
219 development of their summation method as a progressive application of
220 these techniques,\cite{Wolf99} while Zahn \textit{et al.} founded
221 their damped Coulomb modification (Eq. (\ref{eq:ZahnPot})) on the
222 post-limit forces (Eq. (\ref{eq:WolfForces})) which were derived using
223 both techniques. It is possible, however, to separate these
224 tricks and study their effects independently.
225
226 Starting with the original observation that the effective range of the
227 electrostatic interaction in condensed phases is considerably less
228 than $r^{-1}$, either the cutoff sphere neutralization or the
229 distance-dependent damping technique could be used as a foundation for
230 a new pairwise summation method. Wolf \textit{et al.} made the
231 observation that charge neutralization within the cutoff sphere plays
232 a significant role in energy convergence; therefore we will begin our
233 analysis with the various shifted forms that maintain this charge
234 neutralization. We can evaluate the methods of Wolf
235 \textit{et al.} and Zahn \textit{et al.} by considering the standard
236 shifted potential,
237 \begin{equation}
238 v_\textrm{SP}(r) = \begin{cases}
239 v(r)-v_\textrm{c} &\quad r\leqslant R_\textrm{c} \\ 0 &\quad r >
240 R_\textrm{c}
241 \end{cases},
242 \label{eq:shiftingPotForm}
243 \end{equation}
244 and shifted force,
245 \begin{equation}
246 v_\textrm{SF}(r) = \begin{cases}
247 v(r)-v_\textrm{c}-\left(\frac{d v(r)}{d r}\right)_{r=R_\textrm{c}}(r-R_\textrm{c})
248 &\quad r\leqslant R_\textrm{c} \\ 0 &\quad r > R_\textrm{c}
249 \end{cases},
250 \label{eq:shiftingForm}
251 \end{equation}
252 functions where $v(r)$ is the unshifted form of the potential, and
253 $v_c$ is $v(R_\textrm{c})$. The Shifted Force ({\sc sf}) form ensures
254 that both the potential and the forces goes to zero at the cutoff
255 radius, while the Shifted Potential ({\sc sp}) form only ensures the
256 potential is smooth at the cutoff radius
257 ($R_\textrm{c}$).\cite{Allen87}
258
259 The forces associated with the shifted potential are simply the forces
260 of the unshifted potential itself (when inside the cutoff sphere),
261 \begin{equation}
262 f_{\textrm{SP}} = -\left( \frac{d v(r)}{dr} \right),
263 \end{equation}
264 and are zero outside. Inside the cutoff sphere, the forces associated
265 with the shifted force form can be written,
266 \begin{equation}
267 f_{\textrm{SF}} = -\left( \frac{d v(r)}{dr} \right) + \left(\frac{d
268 v(r)}{dr} \right)_{r=R_\textrm{c}}.
269 \end{equation}
270
271 If the potential ($v(r)$) is taken to be the normal Coulomb potential,
272 \begin{equation}
273 v(r) = \frac{q_i q_j}{r},
274 \label{eq:Coulomb}
275 \end{equation}
276 then the Shifted Potential ({\sc sp}) forms will give Wolf {\it et
277 al.}'s undamped prescription:
278 \begin{equation}
279 v_\textrm{SP}(r) =
280 q_iq_j\left(\frac{1}{r}-\frac{1}{R_\textrm{c}}\right) \quad
281 r\leqslant R_\textrm{c},
282 \label{eq:SPPot}
283 \end{equation}
284 with associated forces,
285 \begin{equation}
286 f_\textrm{SP}(r) = q_iq_j\left(\frac{1}{r^2}\right) \quad r\leqslant R_\textrm{c}.
287 \label{eq:SPForces}
288 \end{equation}
289 These forces are identical to the forces of the standard Coulomb
290 interaction, and cutting these off at $R_c$ was addressed by Wolf
291 \textit{et al.} as undesirable. They pointed out that the effect of
292 the image charges is neglected in the forces when this form is
293 used,\cite{Wolf99} thereby eliminating any benefit from the method in
294 molecular dynamics. Additionally, there is a discontinuity in the
295 forces at the cutoff radius which results in energy drift during MD
296 simulations.
297
298 The shifted force ({\sc sf}) form using the normal Coulomb potential
299 will give,
300 \begin{equation}
301 v_\textrm{SF}(r) = q_iq_j\left[\frac{1}{r}-\frac{1}{R_\textrm{c}}+\left(\frac{1}{R_\textrm{c}^2}\right)(r-R_\textrm{c})\right] \quad r\leqslant R_\textrm{c}.
302 \label{eq:SFPot}
303 \end{equation}
304 with associated forces,
305 \begin{equation}
306 f_\textrm{SF}(r) = q_iq_j\left(\frac{1}{r^2}-\frac{1}{R_\textrm{c}^2}\right) \quad r\leqslant R_\textrm{c}.
307 \label{eq:SFForces}
308 \end{equation}
309 This formulation has the benefits that there are no discontinuities at
310 the cutoff distance, while the neutralizing image charges are present
311 in both the energy and force expressions. It would be simple to add
312 the self-neutralizing term back when computing the total energy of the
313 system, thereby maintaining the agreement with the Madelung energies.
314 A side effect of this treatment is the alteration in the shape of the
315 potential that comes from the derivative term. Thus, a degree of
316 clarity about agreement with the empirical potential is lost in order
317 to gain functionality in dynamics simulations.
318
319 Wolf \textit{et al.} originally discussed the energetics of the
320 shifted Coulomb potential (Eq. \ref{eq:SPPot}), and they found that
321 it was still insufficient for accurate determination of the energy
322 with reasonable cutoff distances. The calculated Madelung energies
323 fluctuate around the expected value with increasing cutoff radius, but
324 the oscillations converge toward the correct value.\cite{Wolf99} A
325 damping function was incorporated to accelerate the convergence; and
326 though alternative functional forms could be
327 used,\cite{Jones56,Heyes81} the complimentary error function was
328 chosen to mirror the effective screening used in the Ewald summation.
329 Incorporating this error function damping into the simple Coulomb
330 potential,
331 \begin{equation}
332 v(r) = \frac{\mathrm{erfc}\left(\alpha r\right)}{r},
333 \label{eq:dampCoulomb}
334 \end{equation}
335 the shifted potential (Eq. (\ref{eq:SPPot})) can be reacquired using
336 eq. (\ref{eq:shiftingForm}),
337 \begin{equation}
338 v_{\textrm{DSP}}(r) = q_iq_j\left(\frac{\textrm{erfc}\left(\alpha r\right)}{r}-\frac{\textrm{erfc}\left(\alpha R_\textrm{c}\right)}{R_\textrm{c}}\right) \quad r\leqslant R_\textrm{c},
339 \label{eq:DSPPot}
340 \end{equation}
341 with associated forces,
342 \begin{equation}
343 f_{\textrm{DSP}}(r) = q_iq_j\left(\frac{\textrm{erfc}\left(\alpha r\right)}{r^2}+\frac{2\alpha}{\pi^{1/2}}\frac{\exp{\left(-\alpha^2r^2\right)}}{r}\right) \quad r\leqslant R_\textrm{c}.
344 \label{eq:DSPForces}
345 \end{equation}
346 Again, this damped shifted potential suffers from a discontinuity and
347 a lack of the image charges in the forces. To remedy these concerns,
348 one may derive a {\sc sf} variant by including the derivative
349 term in eq. (\ref{eq:shiftingForm}),
350 \begin{equation}
351 \begin{split}
352 v_\mathrm{DSF}(r) = q_iq_j\Biggr{[}&\frac{\mathrm{erfc}\left(\alpha r\right)}{r}-\frac{\mathrm{erfc}\left(\alpha R_\mathrm{c}\right)}{R_\mathrm{c}} \\ &\left.+\left(\frac{\mathrm{erfc}\left(\alpha R_\mathrm{c}\right)}{R_\mathrm{c}^2}+\frac{2\alpha}{\pi^{1/2}}\frac{\exp\left(-\alpha^2R_\mathrm{c}^2\right)}{R_\mathrm{c}}\right)\left(r-R_\mathrm{c}\right)\ \right] \quad r\leqslant R_\textrm{c}.
353 \label{eq:DSFPot}
354 \end{split}
355 \end{equation}
356 The derivative of the above potential will lead to the following forces,
357 \begin{equation}
358 \begin{split}
359 f_\mathrm{DSF}(r) = q_iq_j\Biggr{[}&\left(\frac{\textrm{erfc}\left(\alpha r\right)}{r^2}+\frac{2\alpha}{\pi^{1/2}}\frac{\exp{\left(-\alpha^2r^2\right)}}{r}\right) \\ &\left.-\left(\frac{\textrm{erfc}\left(\alpha R_{\textrm{c}}\right)}{R_{\textrm{c}}^2}+\frac{2\alpha}{\pi^{1/2}}\frac{\exp{\left(-\alpha^2R_{\textrm{c}}^2\right)}}{R_{\textrm{c}}}\right)\right] \quad r\leqslant R_\textrm{c}.
360 \label{eq:DSFForces}
361 \end{split}
362 \end{equation}
363 If the damping parameter $(\alpha)$ is chosen to be zero, the undamped
364 case, eqs. (\ref{eq:SPPot}-\ref{eq:SFForces}) are correctly recovered
365 from eqs. (\ref{eq:DSPPot}-\ref{eq:DSFForces}).
366
367 This new {\sc sf} potential is similar to equation \ref{eq:ZahnPot}
368 derived by Zahn \textit{et al.}; however, there are two important
369 differences.\cite{Zahn02} First, the $v_\textrm{c}$ term from
370 eq. (\ref{eq:shiftingForm}) is equal to eq. (\ref{eq:dampCoulomb})
371 with $r$ replaced by $R_\textrm{c}$. This term is {\it not} present
372 in the Zahn potential, resulting in a potential discontinuity as
373 particles cross $R_\textrm{c}$. Second, the sign of the derivative
374 portion is different. The missing $v_\textrm{c}$ term would not
375 affect molecular dynamics simulations (although the computed energy
376 would be expected to have sudden jumps as particle distances crossed
377 $R_c$). The sign problem would be a potential source of errors,
378 however. In fact, it introduces a discontinuity in the forces at the
379 cutoff, because the force function is shifted in the wrong direction
380 and doesn't cross zero at $R_\textrm{c}$.
381
382 Eqs. (\ref{eq:DSFPot}) and (\ref{eq:DSFForces}) result in an
383 electrostatic summation method that is continuous in both the
384 potential and forces and which incorporates the damping function
385 proposed by Wolf \textit{et al.}\cite{Wolf99} In the rest of this
386 paper, we will evaluate exactly how good these methods ({\sc sp}, {\sc
387 sf}, damping) are at reproducing the correct electrostatic summation
388 performed by the Ewald sum.
389
390 \subsection{Other alternatives}
391 In addition to the methods described above, we will consider some
392 other techniques that commonly get used in molecular simulations. The
393 simplest of these is group-based cutoffs. Though of little use for
394 non-neutral molecules, collecting atoms into neutral groups takes
395 advantage of the observation that the electrostatic interactions decay
396 faster than those for monopolar pairs.\cite{Steinbach94} When
397 considering these molecules as groups, an orientational aspect is
398 introduced to the interactions. Consequently, as these molecular
399 particles move through $R_\textrm{c}$, the energy will drift upward
400 due to the anisotropy of the net molecular dipole
401 interactions.\cite{Rahman71} To maintain good energy conservation,
402 both the potential and derivative need to be smoothly switched to zero
403 at $R_\textrm{c}$.\cite{Adams79} This is accomplished using a
404 switching function,
405 \begin{equation}
406 S(r) = \begin{cases} 1 &\quad r\leqslant r_\textrm{sw} \\
407 \frac{(R_\textrm{c}+2r-3r_\textrm{sw})(R_\textrm{c}-r)^2}{(R_\textrm{c}-r_\textrm{sw})^3} &\quad r_\textrm{sw}<r\leqslant R_\textrm{c} \\
408 0 &\quad r>R_\textrm{c}
409 \end{cases},
410 \end{equation}
411 where the above form is for a cubic function. If a smooth second
412 derivative is desired, a fifth (or higher) order polynomial can be
413 used.\cite{Andrea83}
414
415 Group-based cutoffs neglect the surroundings beyond $R_\textrm{c}$,
416 and to incorporate their effect, a method like Reaction Field ({\sc
417 rf}) can be used. The original theory for {\sc rf} was originally
418 developed by Onsager,\cite{Onsager36} and it was applied in
419 simulations for the study of water by Barker and Watts.\cite{Barker73}
420 In application, it is simply an extension of the group-based cutoff
421 method where the net dipole within the cutoff sphere polarizes an
422 external dielectric, which reacts back on the central dipole. The
423 same switching function considerations for group-based cutoffs need to
424 made for {\sc rf}, with the additional pre-specification of a
425 dielectric constant.
426
427 \section{Methods}
428
429 In classical molecular mechanics simulations, there are two primary
430 techniques utilized to obtain information about the system of
431 interest: Monte Carlo (MC) and Molecular Dynamics (MD). Both of these
432 techniques utilize pairwise summations of interactions between
433 particle sites, but they use these summations in different ways.
434
435 In MC, the potential energy difference between two subsequent
436 configurations dictates the progression of MC sampling. Going back to
437 the origins of this method, the acceptance criterion for the canonical
438 ensemble laid out by Metropolis \textit{et al.} states that a
439 subsequent configuration is accepted if $\Delta E < 0$ or if $\xi <
440 \exp(-\Delta E/kT)$, where $\xi$ is a random number between 0 and
441 1.\cite{Metropolis53} Maintaining the correct $\Delta E$ when using an
442 alternate method for handling the long-range electrostatics will
443 ensure proper sampling from the ensemble.
444
445 In MD, the derivative of the potential governs how the system will
446 progress in time. Consequently, the force and torque vectors on each
447 body in the system dictate how the system evolves. If the magnitude
448 and direction of these vectors are similar when using alternate
449 electrostatic summation techniques, the dynamics in the short term
450 will be indistinguishable. Because error in MD calculations is
451 cumulative, one should expect greater deviation at longer times,
452 although methods which have large differences in the force and torque
453 vectors will diverge from each other more rapidly.
454
455 \subsection{Monte Carlo and the Energy Gap}\label{sec:MCMethods}
456 The pairwise summation techniques (outlined in section
457 \ref{sec:ESMethods}) were evaluated for use in MC simulations by
458 studying the energy differences between conformations. We took the
459 SPME-computed energy difference between two conformations to be the
460 correct behavior. An ideal performance by an alternative method would
461 reproduce these energy differences exactly. Since none of the methods
462 provide exact energy differences, we used linear least squares
463 regressions of the $\Delta E$ values between configurations using SPME
464 against $\Delta E$ values using tested methods provides a quantitative
465 comparison of this agreement. Unitary results for both the
466 correlation and correlation coefficient for these regressions indicate
467 equivalent energetic results between the method under consideration
468 and electrostatics handled using SPME. Sample correlation plots for
469 two alternate methods are shown in Fig. \ref{fig:linearFit}.
470
471 \begin{figure}
472 \centering
473 \includegraphics[width = \linewidth]{./dualLinear.pdf}
474 \caption{Example least squares regressions of the configuration energy differences for SPC/E water systems. The upper plot shows a data set with a poor correlation coefficient ($R^2$), while the lower plot shows a data set with a good correlation coefficient.}
475 \label{fig:linearFit}
476 \end{figure}
477
478 Each system type (detailed in section \ref{sec:RepSims}) was
479 represented using 500 independent configurations. Additionally, we
480 used seven different system types, so each of the alternate
481 (non-Ewald) electrostatic summation methods was evaluated using
482 873,250 configurational energy differences.
483
484 Results and discussion for the individual analysis of each of the
485 system types appear in the supporting information, while the
486 cumulative results over all the investigated systems appears below in
487 section \ref{sec:EnergyResults}.
488
489 \subsection{Molecular Dynamics and the Force and Torque Vectors}\label{sec:MDMethods}
490 We evaluated the pairwise methods (outlined in section
491 \ref{sec:ESMethods}) for use in MD simulations by
492 comparing the force and torque vectors with those obtained using the
493 reference Ewald summation (SPME). Both the magnitude and the
494 direction of these vectors on each of the bodies in the system were
495 analyzed. For the magnitude of these vectors, linear least squares
496 regression analyses were performed as described previously for
497 comparing $\Delta E$ values. Instead of a single energy difference
498 between two system configurations, we compared the magnitudes of the
499 forces (and torques) on each molecule in each configuration. For a
500 system of 1000 water molecules and 40 ions, there are 1040 force
501 vectors and 1000 torque vectors. With 500 configurations, this
502 results in 520,000 force and 500,000 torque vector comparisons.
503 Additionally, data from seven different system types was aggregated
504 before the comparison was made.
505
506 The {\it directionality} of the force and torque vectors was
507 investigated through measurement of the angle ($\theta$) formed
508 between those computed from the particular method and those from SPME,
509 \begin{equation}
510 \theta_f = \cos^{-1} \hat{f}_\textrm{SPME} \cdot \hat{f}_\textrm{Method},
511 \end{equation}
512 where $\hat{f}_\textrm{M}$ is the unit vector pointing along the
513 force vector computed using method $M$.
514
515 Each of these $\theta$ values was accumulated in a distribution
516 function, weighted by the area on the unit sphere. Non-linear
517 Gaussian fits were used to measure the width of the resulting
518 distributions.
519
520 \begin{figure}
521 \centering
522 \includegraphics[width = \linewidth]{./gaussFit.pdf}
523 \caption{Sample fit of the angular distribution of the force vectors over all of the studied systems. Gaussian fits were used to obtain values for the variance in force and torque vectors used in the following figure.}
524 \label{fig:gaussian}
525 \end{figure}
526
527 Figure \ref{fig:gaussian} shows an example distribution with applied
528 non-linear fits. The solid line is a Gaussian profile, while the
529 dotted line is a Voigt profile, a convolution of a Gaussian and a
530 Lorentzian. Since this distribution is a measure of angular error
531 between two different electrostatic summation methods, there is no
532 {\it a priori} reason for the profile to adhere to any specific shape.
533 Gaussian fits was used to compare all the tested methods. The
534 variance ($\sigma^2$) was extracted from each of these fits and was
535 used to compare distribution widths. Values of $\sigma^2$ near zero
536 indicate vector directions indistinguishable from those calculated
537 when using the reference method (SPME).
538
539 \subsection{Short-time Dynamics}
540
541 \subsection{Long-Time and Collective Motion}\label{sec:LongTimeMethods}
542 Evaluation of the long-time dynamics of charged systems was performed
543 by considering the NaCl crystal system while using a subset of the
544 best performing pairwise methods. The NaCl crystal was chosen to
545 avoid possible complications involving the propagation techniques of
546 orientational motion in molecular systems. To enhance the atomic
547 motion, these crystals were equilibrated at 1000 K, near the
548 experimental $T_m$ for NaCl. Simulations were performed under the
549 microcanonical ensemble, and velocity autocorrelation functions
550 (Eq. \ref{eq:vCorr}) were computed for each of the trajectories,
551 \begin{equation}
552 C_v(t) = \langle v_i(0)\cdot v_i(t)\rangle.
553 \label{eq:vCorr}
554 \end{equation}
555 Velocity autocorrelation functions require detailed short time data
556 and long trajectories for good statistics, thus velocity information
557 was saved every 5 fs over 100 ps trajectories. The power spectrum
558 ($I(\omega)$) is obtained via Fourier transform of the autocorrelation
559 function
560 \begin{equation}
561 I(\omega) = \frac{1}{2\pi}\int^{\infty}_{-\infty}C_v(t)e^{-i\omega t}dt,
562 \label{eq:powerSpec}
563 \end{equation}
564 where the frequency, $\omega=0,\ 1,\ ...,\ N-1$.
565
566 \subsection{Representative Simulations}\label{sec:RepSims}
567 A variety of common and representative simulations were analyzed to
568 determine the relative effectiveness of the pairwise summation
569 techniques in reproducing the energetics and dynamics exhibited by
570 SPME. The studied systems were as follows:
571 \begin{enumerate}
572 \item Liquid Water
573 \item Crystalline Water (Ice I$_\textrm{c}$)
574 \item NaCl Crystal
575 \item NaCl Melt
576 \item Low Ionic Strength Solution of NaCl in Water
577 \item High Ionic Strength Solution of NaCl in Water
578 \item 6 \AA\ Radius Sphere of Argon in Water
579 \end{enumerate}
580 By utilizing the pairwise techniques (outlined in section
581 \ref{sec:ESMethods}) in systems composed entirely of neutral groups,
582 charged particles, and mixtures of the two, we can comment on possible
583 system dependence and/or universal applicability of the techniques.
584
585 Generation of the system configurations was dependent on the system
586 type. For the solid and liquid water configurations, configuration
587 snapshots were taken at regular intervals from higher temperature 1000
588 SPC/E water molecule trajectories and each equilibrated individually.
589 The solid and liquid NaCl systems consisted of 500 Na+ and 500 Cl-
590 ions and were selected and equilibrated in the same fashion as the
591 water systems. For the low and high ionic strength NaCl solutions, 4
592 and 40 ions were first solvated in a 1000 water molecule boxes
593 respectively. Ion and water positions were then randomly swapped, and
594 the resulting configurations were again equilibrated individually.
595 Finally, for the Argon/Water "charge void" systems, the identities of
596 all the SPC/E waters within 6 \AA\ of the center of the equilibrated
597 water configurations were converted to argon
598 (Fig. \ref{fig:argonSlice}).
599
600 \begin{figure}
601 \centering
602 \includegraphics[width = \linewidth]{./slice.pdf}
603 \caption{A slice from the center of a water box used in a charge void simulation. The darkened region represents the boundary sphere within which the water molecules were converted to argon atoms.}
604 \label{fig:argonSlice}
605 \end{figure}
606
607 \subsection{Electrostatic Summation Methods}\label{sec:ESMethods}
608 Electrostatic summation method comparisons were performed using SPME,
609 the {\sc sp} and {\sc sf} methods - both with damping
610 parameters ($\alpha$) of 0.0, 0.1, 0.2, and 0.3 \AA$^{-1}$ (no, weak,
611 moderate, and strong damping respectively), reaction field with an
612 infinite dielectric constant, and an unmodified cutoff. Group-based
613 cutoffs with a fifth-order polynomial switching function were
614 necessary for the reaction field simulations and were utilized in the
615 SP, SF, and pure cutoff methods for comparison to the standard lack of
616 group-based cutoffs with a hard truncation. The SPME calculations
617 were performed using the TINKER implementation of SPME,\cite{Ponder87}
618 while all other method calculations were performed using the OOPSE
619 molecular mechanics package.\cite{Meineke05}
620
621 These methods were additionally evaluated with three different cutoff
622 radii (9, 12, and 15 \AA) to investigate possible cutoff radius
623 dependence. It should be noted that the damping parameter chosen in
624 SPME, or so called ``Ewald Coefficient", has a significant effect on
625 the energies and forces calculated. Typical molecular mechanics
626 packages default this to a value dependent on the cutoff radius and a
627 tolerance (typically less than $1 \times 10^{-4}$ kcal/mol). Smaller
628 tolerances are typically associated with increased accuracy, but this
629 usually means more time spent calculating the reciprocal-space portion
630 of the summation.\cite{Perram88,Essmann95} The default TINKER
631 tolerance of $1 \times 10^{-8}$ kcal/mol was used in all SPME
632 calculations, resulting in Ewald Coefficients of 0.4200, 0.3119, and
633 0.2476 \AA$^{-1}$ for cutoff radii of 9, 12, and 15 \AA\ respectively.
634
635 \section{Results and Discussion}
636
637 \subsection{Configuration Energy Differences}\label{sec:EnergyResults}
638 In order to evaluate the performance of the pairwise electrostatic
639 summation methods for Monte Carlo simulations, the energy differences
640 between configurations were compared to the values obtained when using
641 SPME. The results for the subsequent regression analysis are shown in
642 figure \ref{fig:delE}.
643
644 \begin{figure}
645 \centering
646 \includegraphics[width=5.5in]{./delEplot.pdf}
647 \caption{Statistical analysis of the quality of configurational energy differences for a given electrostatic method compared with the reference Ewald sum. Results with a value equal to 1 (dashed line) indicate $\Delta E$ values indistinguishable from those obtained using SPME. Different values of the cutoff radius are indicated with different symbols (9\AA\ = circles, 12\AA\ = squares, and 15\AA\ = inverted triangles).}
648 \label{fig:delE}
649 \end{figure}
650
651 In this figure, it is apparent that it is unreasonable to expect
652 realistic results using an unmodified cutoff. This is not all that
653 surprising since this results in large energy fluctuations as atoms
654 move in and out of the cutoff radius. These fluctuations can be
655 alleviated to some degree by using group based cutoffs with a
656 switching function.\cite{Steinbach94} The Group Switch Cutoff row
657 doesn't show a significant improvement in this plot because the salt
658 and salt solution systems contain non-neutral groups, see the
659 accompanying supporting information for a comparison where all groups
660 are neutral.
661
662 Correcting the resulting charged cutoff sphere is one of the purposes
663 of the damped Coulomb summation proposed by Wolf \textit{et
664 al.},\cite{Wolf99} and this correction indeed improves the results as
665 seen in the Shifted-Potental rows. While the undamped case of this
666 method is a significant improvement over the pure cutoff, it still
667 doesn't correlate that well with SPME. Inclusion of potential damping
668 improves the results, and using an $\alpha$ of 0.2 \AA $^{-1}$ shows
669 an excellent correlation and quality of fit with the SPME results,
670 particularly with a cutoff radius greater than 12 \AA . Use of a
671 larger damping parameter is more helpful for the shortest cutoff
672 shown, but it has a detrimental effect on simulations with larger
673 cutoffs. In the {\sc sf} sets, increasing damping results in
674 progressively poorer correlation. Overall, the undamped case is the
675 best performing set, as the correlation and quality of fits are
676 consistently superior regardless of the cutoff distance. This result
677 is beneficial in that the undamped case is less computationally
678 prohibitive do to the lack of complimentary error function calculation
679 when performing the electrostatic pair interaction. The reaction
680 field results illustrates some of that method's limitations, primarily
681 that it was developed for use in homogenous systems; although it does
682 provide results that are an improvement over those from an unmodified
683 cutoff.
684
685 \subsection{Magnitudes of the Force and Torque Vectors}
686
687 Evaluation of pairwise methods for use in Molecular Dynamics
688 simulations requires consideration of effects on the forces and
689 torques. Investigation of the force and torque vector magnitudes
690 provides a measure of the strength of these values relative to SPME.
691 Figures \ref{fig:frcMag} and \ref{fig:trqMag} respectively show the
692 force and torque vector magnitude regression results for the
693 accumulated analysis over all the system types.
694
695 \begin{figure}
696 \centering
697 \includegraphics[width=5.5in]{./frcMagplot.pdf}
698 \caption{Statistical analysis of the quality of the force vector magnitudes for a given electrostatic method compared with the reference Ewald sum. Results with a value equal to 1 (dashed line) indicate force magnitude values indistinguishable from those obtained using SPME. Different values of the cutoff radius are indicated with different symbols (9\AA\ = circles, 12\AA\ = squares, and 15\AA\ = inverted triangles).}
699 \label{fig:frcMag}
700 \end{figure}
701
702 Figure \ref{fig:frcMag}, for the most part, parallels the results seen
703 in the previous $\Delta E$ section. The unmodified cutoff results are
704 poor, but using group based cutoffs and a switching function provides
705 a improvement much more significant than what was seen with $\Delta
706 E$. Looking at the {\sc sp} sets, the slope and $R^2$
707 improve with the use of damping to an optimal result of 0.2 \AA
708 $^{-1}$ for the 12 and 15 \AA\ cutoffs. Further increases in damping,
709 while beneficial for simulations with a cutoff radius of 9 \AA\ , is
710 detrimental to simulations with larger cutoff radii. The undamped
711 {\sc sf} method gives forces in line with those obtained using
712 SPME, and use of a damping function results in minor improvement. The
713 reaction field results are surprisingly good, considering the poor
714 quality of the fits for the $\Delta E$ results. There is still a
715 considerable degree of scatter in the data, but it correlates well in
716 general. To be fair, we again note that the reaction field
717 calculations do not encompass NaCl crystal and melt systems, so these
718 results are partly biased towards conditions in which the method
719 performs more favorably.
720
721 \begin{figure}
722 \centering
723 \includegraphics[width=5.5in]{./trqMagplot.pdf}
724 \caption{Statistical analysis of the quality of the torque vector magnitudes for a given electrostatic method compared with the reference Ewald sum. Results with a value equal to 1 (dashed line) indicate torque magnitude values indistinguishable from those obtained using SPME. Different values of the cutoff radius are indicated with different symbols (9\AA\ = circles, 12\AA\ = squares, and 15\AA\ = inverted triangles).}
725 \label{fig:trqMag}
726 \end{figure}
727
728 To evaluate the torque vector magnitudes, the data set from which
729 values are drawn is limited to rigid molecules in the systems
730 (i.e. water molecules). In spite of this smaller sampling pool, the
731 torque vector magnitude results in figure \ref{fig:trqMag} are still
732 similar to those seen for the forces; however, they more clearly show
733 the improved behavior that comes with increasing the cutoff radius.
734 Moderate damping is beneficial to the {\sc sp} and helpful
735 yet possibly unnecessary with the {\sc sf} method, and they also
736 show that over-damping adversely effects all cutoff radii rather than
737 showing an improvement for systems with short cutoffs. The reaction
738 field method performs well when calculating the torques, better than
739 the Shifted Force method over this limited data set.
740
741 \subsection{Directionality of the Force and Torque Vectors}
742
743 Having force and torque vectors with magnitudes that are well
744 correlated to SPME is good, but if they are not pointing in the proper
745 direction the results will be incorrect. These vector directions were
746 investigated through measurement of the angle formed between them and
747 those from SPME. The results (Fig. \ref{fig:frcTrqAng}) are compared
748 through the variance ($\sigma^2$) of the Gaussian fits of the angle
749 error distributions of the combined set over all system types.
750
751 \begin{figure}
752 \centering
753 \includegraphics[width=5.5in]{./frcTrqAngplot.pdf}
754 \caption{Statistical analysis of the quality of the Gaussian fit of the force and torque vector angular distributions for a given electrostatic method compared with the reference Ewald sum. Results with a variance ($\sigma^2$) equal to zero (dashed line) indicate force and torque directions indistinguishable from those obtained using SPME. Different values of the cutoff radius are indicated with different symbols (9\AA\ = circles, 12\AA\ = squares, and 15\AA\ = inverted triangles).}
755 \label{fig:frcTrqAng}
756 \end{figure}
757
758 Both the force and torque $\sigma^2$ results from the analysis of the
759 total accumulated system data are tabulated in figure
760 \ref{fig:frcTrqAng}. All of the sets, aside from the over-damped case
761 show the improvement afforded by choosing a longer simulation cutoff.
762 Increasing the cutoff from 9 to 12 \AA\ typically results in a halving
763 of the distribution widths, with a similar improvement going from 12
764 to 15 \AA . The undamped {\sc sf}, Group Based Cutoff, and
765 Reaction Field methods all do equivalently well at capturing the
766 direction of both the force and torque vectors. Using damping
767 improves the angular behavior significantly for the {\sc sp}
768 and moderately for the {\sc sf} methods. Increasing the damping
769 too far is destructive for both methods, particularly to the torque
770 vectors. Again it is important to recognize that the force vectors
771 cover all particles in the systems, while torque vectors are only
772 available for neutral molecular groups. Damping appears to have a
773 more beneficial effect on non-neutral bodies, and this observation is
774 investigated further in the accompanying supporting information.
775
776 \begin{table}[htbp]
777 \centering
778 \caption{Variance ($\sigma^2$) of the force (top set) and torque (bottom set) vector angle difference distributions for the Shifted Potential and Shifted Force methods. Calculations were performed both with (Y) and without (N) group based cutoffs and a switching function. The $\alpha$ values have units of \AA$^{-1}$ and the variance values have units of degrees$^2$.}
779 \begin{tabular}{@{} ccrrrrrrrr @{}}
780 \\
781 \toprule
782 & & \multicolumn{4}{c}{Shifted Potential} & \multicolumn{4}{c}{Shifted Force} \\
783 \cmidrule(lr){3-6}
784 \cmidrule(l){7-10}
785 $R_\textrm{c}$ & Groups & $\alpha = 0$ & $\alpha = 0.1$ & $\alpha = 0.2$ & $\alpha = 0.3$ & $\alpha = 0$ & $\alpha = 0.1$ & $\alpha = 0.2$ & $\alpha = 0.3$\\
786 \midrule
787
788 9 \AA & N & 29.545 & 12.003 & 5.489 & 0.610 & 2.323 & 2.321 & 0.429 & 0.603 \\
789 & \textbf{Y} & \textbf{2.486} & \textbf{2.160} & \textbf{0.667} & \textbf{0.608} & \textbf{1.768} & \textbf{1.766} & \textbf{0.676} & \textbf{0.609} \\
790 12 \AA & N & 19.381 & 3.097 & 0.190 & 0.608 & 0.920 & 0.736 & 0.133 & 0.612 \\
791 & \textbf{Y} & \textbf{0.515} & \textbf{0.288} & \textbf{0.127} & \textbf{0.586} & \textbf{0.308} & \textbf{0.249} & \textbf{0.127} & \textbf{0.586} \\
792 15 \AA & N & 12.700 & 1.196 & 0.123 & 0.601 & 0.339 & 0.160 & 0.123 & 0.601 \\
793 & \textbf{Y} & \textbf{0.228} & \textbf{0.099} & \textbf{0.121} & \textbf{0.598} & \textbf{0.144} & \textbf{0.090} & \textbf{0.121} & \textbf{0.598} \\
794
795 \midrule
796
797 9 \AA & N & 262.716 & 116.585 & 5.234 & 5.103 & 2.392 & 2.350 & 1.770 & 5.122 \\
798 & \textbf{Y} & \textbf{2.115} & \textbf{1.914} & \textbf{1.878} & \textbf{5.142} & \textbf{2.076} & \textbf{2.039} & \textbf{1.972} & \textbf{5.146} \\
799 12 \AA & N & 129.576 & 25.560 & 1.369 & 5.080 & 0.913 & 0.790 & 1.362 & 5.124 \\
800 & \textbf{Y} & \textbf{0.810} & \textbf{0.685} & \textbf{1.352} & \textbf{5.082} & \textbf{0.765} & \textbf{0.714} & \textbf{1.360} & \textbf{5.082} \\
801 15 \AA & N & 87.275 & 4.473 & 1.271 & 5.000 & 0.372 & 0.312 & 1.271 & 5.000 \\
802 & \textbf{Y} & \textbf{0.282} & \textbf{0.294} & \textbf{1.272} & \textbf{4.999} & \textbf{0.324} & \textbf{0.318} & \textbf{1.272} & \textbf{4.999} \\
803
804 \bottomrule
805 \end{tabular}
806 \label{tab:groupAngle}
807 \end{table}
808
809 Although not discussed previously, group based cutoffs can be applied
810 to both the {\sc sp} and {\sc sf} methods. Use off a
811 switching function corrects for the discontinuities that arise when
812 atoms of a group exit the cutoff before the group's center of mass.
813 Though there are no significant benefit or drawbacks observed in
814 $\Delta E$ and vector magnitude results when doing this, there is a
815 measurable improvement in the vector angle results. Table
816 \ref{tab:groupAngle} shows the angular variance values obtained using
817 group based cutoffs and a switching function alongside the standard
818 results seen in figure \ref{fig:frcTrqAng} for comparison purposes.
819 The {\sc sp} shows much narrower angular distributions for
820 both the force and torque vectors when using an $\alpha$ of 0.2
821 \AA$^{-1}$ or less, while {\sc sf} shows improvements in the
822 undamped and lightly damped cases. Thus, by calculating the
823 electrostatic interactions in terms of molecular pairs rather than
824 atomic pairs, the direction of the force and torque vectors are
825 determined more accurately.
826
827 One additional trend to recognize in table \ref{tab:groupAngle} is
828 that the $\sigma^2$ values for both {\sc sp} and
829 {\sc sf} converge as $\alpha$ increases, something that is easier
830 to see when using group based cutoffs. Looking back on figures
831 \ref{fig:delE}, \ref{fig:frcMag}, and \ref{fig:trqMag}, show this
832 behavior clearly at large $\alpha$ and cutoff values. The reason for
833 this is that the complimentary error function inserted into the
834 potential weakens the electrostatic interaction as $\alpha$ increases.
835 Thus, at larger values of $\alpha$, both the summation method types
836 progress toward non-interacting functions, so care is required in
837 choosing large damping functions lest one generate an undesirable loss
838 in the pair interaction. Kast \textit{et al.} developed a method for
839 choosing appropriate $\alpha$ values for these types of electrostatic
840 summation methods by fitting to $g(r)$ data, and their methods
841 indicate optimal values of 0.34, 0.25, and 0.16 \AA$^{-1}$ for cutoff
842 values of 9, 12, and 15 \AA\ respectively.\cite{Kast03} These appear
843 to be reasonable choices to obtain proper MC behavior
844 (Fig. \ref{fig:delE}); however, based on these findings, choices this
845 high would introduce error in the molecular torques, particularly for
846 the shorter cutoffs. Based on the above findings, empirical damping
847 up to 0.2 \AA$^{-1}$ proves to be beneficial, but damping is arguably
848 unnecessary when using the {\sc sf} method.
849
850 \subsection{Collective Motion: Power Spectra of NaCl Crystals}
851
852 In the previous studies using a {\sc sf} variant of the damped
853 Wolf coulomb potential, the structure and dynamics of water were
854 investigated rather extensively.\cite{Zahn02,Kast03} Their results
855 indicated that the damped {\sc sf} method results in properties
856 very similar to those obtained when using the Ewald summation.
857 Considering the statistical results shown above, the good performance
858 of this method is not that surprising. Rather than consider the same
859 systems and simply recapitulate their results, we decided to look at
860 the solid state dynamical behavior obtained using the best performing
861 summation methods from the above results.
862
863 \begin{figure}
864 \centering
865 \includegraphics[width = \linewidth]{./spectraSquare.pdf}
866 \caption{Power spectra obtained from the velocity auto-correlation functions of NaCl crystals at 1000 K while using SPME, {\sc sf} ($\alpha$ = 0, 0.1, \& 0.2), and {\sc sp} ($\alpha$ = 0.2). Apodization of the correlation functions via a cubic switching function between 40 and 50 ps was used to clear up the spectral noise resulting from data truncation, and had no noticeable effect on peak location or magnitude. The inset shows the frequency region below 100 cm$^{-1}$ to highlight where the spectra begin to differ.}
867 \label{fig:methodPS}
868 \end{figure}
869
870 Figure \ref{fig:methodPS} shows the power spectra for the NaCl
871 crystals (from averaged Na and Cl ion velocity autocorrelation
872 functions) using the stated electrostatic summation methods. While
873 high frequency peaks of all the spectra overlap, showing the same
874 general features, the low frequency region shows how the summation
875 methods differ. Considering the low-frequency inset (expanded in the
876 upper frame of figure \ref{fig:dampInc}), at frequencies below 100
877 cm$^{-1}$, the correlated motions are blue-shifted when using undamped
878 or weakly damped {\sc sf}. When using moderate damping ($\alpha
879 = 0.2$ \AA$^{-1}$) both the {\sc sf} and {\sc sp}
880 methods give near identical correlated motion behavior as the Ewald
881 method (which has a damping value of 0.3119). The damping acts as a
882 distance dependent Gaussian screening of the point charges for the
883 pairwise summation methods. This weakening of the electrostatic
884 interaction with distance explains why the long-ranged correlated
885 motions are at lower frequencies for the moderately damped methods
886 than for undamped or weakly damped methods. To see this effect more
887 clearly, we show how damping strength affects a simple real-space
888 electrostatic potential,
889 \begin{equation}
890 V_\textrm{damped}=\sum^N_i\sum^N_{j\ne i}q_iq_j\left[\frac{\textrm{erfc}({\alpha r})}{r}\right]S(r),
891 \end{equation}
892 where $S(r)$ is a switching function that smoothly zeroes the
893 potential at the cutoff radius. Figure \ref{fig:dampInc} shows how
894 the low frequency motions are dependent on the damping used in the
895 direct electrostatic sum. As the damping increases, the peaks drop to
896 lower frequencies. Incidentally, use of an $\alpha$ of 0.25
897 \AA$^{-1}$ on a simple electrostatic summation results in low
898 frequency correlated dynamics equivalent to a simulation using SPME.
899 When the coefficient lowers to 0.15 \AA$^{-1}$ and below, these peaks
900 shift to higher frequency in exponential fashion. Though not shown,
901 the spectrum for the simple undamped electrostatic potential is
902 blue-shifted such that the lowest frequency peak resides near 325
903 cm$^{-1}$. In light of these results, the undamped {\sc sf}
904 method producing low-lying motion peaks within 10 cm$^{-1}$ of SPME is
905 quite respectable; however, it appears as though moderate damping is
906 required for accurate reproduction of crystal dynamics.
907 \begin{figure}
908 \centering
909 \includegraphics[width = \linewidth]{./comboSquare.pdf}
910 \caption{Regions of spectra showing the low-frequency correlated motions for NaCl crystals at 1000 K using various electrostatic summation methods. The upper plot is a zoomed inset from figure \ref{fig:methodPS}. As the damping value for the {\sc sf} potential increases, the low-frequency peaks red-shift. The lower plot is of spectra when using SPME and a simple damped Coulombic sum with damping coefficients ($\alpha$) ranging from 0.15 to 0.3 \AA$^{-1}$. As $\alpha$ increases, the peaks are red-shifted toward and eventually beyond the values given by SPME. The larger $\alpha$ values weaken the real-space electrostatics, explaining this shift towards less strongly correlated motions in the crystal.}
911 \label{fig:dampInc}
912 \end{figure}
913
914 \section{Conclusions}
915
916 This investigation of pairwise electrostatic summation techniques
917 shows that there are viable and more computationally efficient
918 electrostatic summation techniques than the Ewald summation, chiefly
919 methods derived from the damped Coulombic sum originally proposed by
920 Wolf \textit{et al.}\cite{Wolf99,Zahn02} In particular, the
921 {\sc sf} method, reformulated above as eq. (\ref{eq:DSFPot}),
922 shows a remarkable ability to reproduce the energetic and dynamic
923 characteristics exhibited by simulations employing lattice summation
924 techniques. The cumulative energy difference results showed the
925 undamped {\sc sf} and moderately damped {\sc sp} methods
926 produced results nearly identical to SPME. Similarly for the dynamic
927 features, the undamped or moderately damped {\sc sf} and
928 moderately damped {\sc sp} methods produce force and torque
929 vector magnitude and directions very similar to the expected values.
930 These results translate into long-time dynamic behavior equivalent to
931 that produced in simulations using SPME.
932
933 Aside from the computational cost benefit, these techniques have
934 applicability in situations where the use of the Ewald sum can prove
935 problematic. Primary among them is their use in interfacial systems,
936 where the unmodified lattice sum techniques artificially accentuate
937 the periodicity of the system in an undesirable manner. There have
938 been alterations to the standard Ewald techniques, via corrections and
939 reformulations, to compensate for these systems; but the pairwise
940 techniques discussed here require no modifications, making them
941 natural tools to tackle these problems. Additionally, this
942 transferability gives them benefits over other pairwise methods, like
943 reaction field, because estimations of physical properties (e.g. the
944 dielectric constant) are unnecessary.
945
946 We are not suggesting any flaw with the Ewald sum; in fact, it is the
947 standard by which these simple pairwise sums are judged. However,
948 these results do suggest that in the typical simulations performed
949 today, the Ewald summation may no longer be required to obtain the
950 level of accuracy most researcher have come to expect
951
952 \section{Acknowledgments}
953 \newpage
954
955 \bibliographystyle{jcp2}
956 \bibliography{electrostaticMethods}
957
958
959 \end{document}