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Revision 2957 by chrisfen, Fri Jul 21 22:18:24 2006 UTC vs.
Revision 2977 by chrisfen, Sun Aug 27 15:24:39 2006 UTC

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2   %% http://bibdesk.sourceforge.net/
3  
4  
5 < %% Created for Chris Fennell at 2006-07-21 11:45:23 -0400
5 > %% Created for Chris Fennell at 2006-08-26 23:57:49 -0400
6  
7  
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# Line 43 | Line 43
43   @string{prl = {Phys. Rev. Lett.}}
44  
45   @string{rmp = {Rev. Mod. Phys.}}
46 +
47 +
48 + @article{Freddolino06,
49 +        Author = {P.~L. Freddolino and A.~S. Arkhipov and S.~B. Larson and A. McPherson and K. Schulten},
50 +        Date-Added = {2006-08-24 16:11:43 -0400},
51 +        Date-Modified = {2006-08-24 16:14:03 -0400},
52 +        Doi = {10.1016/j.str.2005.11.014},
53 +        Journal = {Structure},
54 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2006/Freddolino_VirusSimulation_06.pdf},
55 +        Pages = {437-449},
56 +        Title = {Molecular Dynamics Simulations of the Complete Satellite Tobacco Mosaic Virus},
57 +        Volume = {14},
58 +        Year = {2006}}
59 +
60 + @article{Gillen72,
61 +        Author = {K.~T. Gillen and D.~C. Douglas and M.~J.~R. Hoch},
62 +        Date-Added = {2006-08-24 10:40:48 -0400},
63 +        Date-Modified = {2006-08-24 10:41:10 -0400},
64 +        Journal = jcp,
65 +        Pages = {5117-5119},
66 +        Title = {Self-Diffusion in Liquid Water to $-31^\circ$~\uppercase{C}},
67 +        Volume = 57,
68 +        Year = 1972}
69 +
70 + @book{Rothschild84,
71 +        Address = {New York},
72 +        Author = {W.~G. Rothschild},
73 +        Date-Added = {2006-08-24 10:35:25 -0400},
74 +        Date-Modified = {2006-08-24 10:35:25 -0400},
75 +        Publisher = {John Wiley \& Sons, Inc.},
76 +        Title = {Dynamics of Molecular Liquids},
77 +        Year = 1984}
78 +
79 + @article{Krynicki66,
80 +        Author = {K. Krynicki},
81 +        Date-Added = {2006-08-24 10:34:29 -0400},
82 +        Date-Modified = {2006-08-24 10:35:05 -0400},
83 +        Journal = {Physica},
84 +        Pages = {167-178},
85 +        Title = {PROTON SPIN-LATTICE RELAXATION IN PURE WATER BETWEEN 0$^\circ$\uppercase{C} AND 100$^\circ$\uppercase{C}},
86 +        Volume = 32,
87 +        Year = 1966}
88 +
89 + @book{Eisenberg69,
90 +        Address = {Oxford},
91 +        Author = {D. Eisenberg and W. Kauzmann},
92 +        Date-Added = {2006-08-24 10:33:59 -0400},
93 +        Date-Modified = {2006-08-24 10:33:59 -0400},
94 +        Publisher = {Oxford University Press},
95 +        Title = {The Structure and Properties of Water},
96 +        Year = 1969}
97 +
98 + @article{Mills73,
99 +        Author = {R. Mills},
100 +        Date-Added = {2006-08-24 10:24:33 -0400},
101 +        Date-Modified = {2006-08-24 10:25:04 -0400},
102 +        Journal = jpc,
103 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Mills_Diffuse_73.pdf},
104 +        Number = 5,
105 +        Pages = {685-688},
106 +        Title = {Self-Diffusion in Normal and Heavy Water in the Range 1-45$^\circ$},
107 +        Volume = 77,
108 +        Year = 1973}
109 +
110 + @article{Barriol64,
111 +        Author = {J. Barriol and A. Weisbecker},
112 +        Date-Added = {2006-08-24 10:23:25 -0400},
113 +        Date-Modified = {2006-08-24 10:23:39 -0400},
114 +        Journal = {Compt. Rend. Acad. Sc. Paris},
115 +        Pages = {4643-4645},
116 +        Title = {Contribution \`{a} l'\'{e}tude di\'{e}lectrique des liquides associ\'{e}s par liaisons hydrog\'{e}ne},
117 +        Volume = 259,
118 +        Year = 1964}
119 +
120 + @article{Badyal00,
121 +        Author = {Y.~S. Badyal and M.~-L. Saboungi and D.~L. Price and S.~D. Shastri and D.~R. Haeffner and A.~K. Soper},
122 +        Date-Added = {2006-08-24 10:21:10 -0400},
123 +        Date-Modified = {2006-08-24 10:22:49 -0400},
124 +        Journal = jcp,
125 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Badyal_ElectronDistributionInH2O_00.pdf},
126 +        Number = 21,
127 +        Pages = {9206-9208},
128 +        Title = {Electron distribution in water},
129 +        Volume = 112,
130 +        Year = 2000}
131 +
132 + @article{Gubskaya02,
133 +        Author = {A.~V. Gubskaya and P.~G. Kusalik},
134 +        Date-Added = {2006-08-24 10:17:41 -0400},
135 +        Date-Modified = {2006-08-24 10:18:37 -0400},
136 +        Journal = jcp,
137 +        Number = 11,
138 +        Pages = {5290-5302},
139 +        Title = {The total molecular dipole moment for liquid water},
140 +        Volume = 117,
141 +        Year = 2002}
142 +
143 + @article{Sprik91,
144 +        Author = {M. Sprik},
145 +        Date-Added = {2006-08-24 10:10:41 -0400},
146 +        Date-Modified = {2006-08-24 10:17:06 -0400},
147 +        Journal = jcp,
148 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Sprik_HBondingAndStaticDielectricInH2O_91.pdf},
149 +        Number = 9,
150 +        Pages = {6762-6769},
151 +        Title = {Hydrogen bonding and the static dielectric constant in liquid water},
152 +        Volume = 95,
153 +        Year = 1991}
154 +
155 + @article{Nezbeda02,
156 +        Author = {M. Lisal and J. Kolafa and I. Nezbeda},
157 +        Date-Added = {2006-08-24 10:08:19 -0400},
158 +        Date-Modified = {2006-08-24 10:08:37 -0400},
159 +        Journal = jcp,
160 +        Number = 19,
161 +        Pages = {8892-8897},
162 +        Title = {An examination of the five-site potential (\uppercase{TIP5P}) for water},
163 +        Volume = 117,
164 +        Year = 2002}
165 +
166 + @article{Rahman72,
167 +        Author = {A. Rahman and F.~H. Stillinger},
168 +        Date-Added = {2006-08-24 10:03:48 -0400},
169 +        Date-Modified = {2006-08-24 10:09:05 -0400},
170 +        Journal = jcp,
171 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Ice_Simulations/Rahman_ProtonDistributionInIce_72.pdf},
172 +        Number = 9,
173 +        Pages = {4009-4017},
174 +        Title = {Proton Distribution in Ice and the \uppercase{K}irkwood Correlation Factor},
175 +        Volume = 57,
176 +        Year = 1972}
177 +
178 + @article{Bernal33,
179 +        Author = {J.~D. Bernal and R.~H. Fowler},
180 +        Date-Added = {2006-08-24 09:58:00 -0400},
181 +        Date-Modified = {2006-08-24 09:59:43 -0400},
182 +        Journal = {J. Chem. Phys.},
183 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/OldPapers/Bernal_TheoryOfWater_33.pdf},
184 +        Number = {8},
185 +        Pages = {515-548},
186 +        Title = {A Theory of Water and Ionic Solution with Particular Reference to Hydrogen and Hydroxyl Ions},
187 +        Volume = {1},
188 +        Year = {1933}}
189 +
190 + @article{Hoover86,
191 +        Author = {W.~G. Hoover},
192 +        Date-Added = {2006-08-24 09:53:21 -0400},
193 +        Date-Modified = {2006-08-24 09:53:21 -0400},
194 +        Journal = pra,
195 +        Number = 3,
196 +        Pages = {2499-2500},
197 +        Title = {Constant-pressure equations of motion},
198 +        Volume = 34,
199 +        Year = 1986}
200 +
201 + @article{Fennell06,
202 +        Author = {C.~J. Fennell and J.~D. Gezelter},
203 +        Date-Added = {2006-08-24 09:49:57 -0400},
204 +        Date-Modified = {2006-08-24 09:49:57 -0400},
205 +        Doi = {10.1063/1.2206581},
206 +        Journal = {J. Chem. Phys.},
207 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Fennell_PairwiseSummationMethods_06.pdf},
208 +        Number = {23},
209 +        Pages = {234104(12)},
210 +        Rating = {5},
211 +        Read = {Yes},
212 +        Title = {Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics},
213 +        Volume = {124},
214 +        Year = {2006}}
215 +
216 + @article{Evans77b,
217 +        Author = {D.~J. Evans and S. Murad},
218 +        Date-Added = {2006-08-22 14:23:16 -0400},
219 +        Date-Modified = {2006-08-22 14:23:16 -0400},
220 +        Journal = {Mol. Phys.},
221 +        Pages = {327-331},
222 +        Title = {Singularity-free algorithm for molecular dynamics simulation of rigid polyatomics},
223 +        Volume = 34,
224 +        Year = 1977}
225 +
226 + @article{Aguado03,
227 +        Author = {A. Aguado and P.~A. Madden},
228 +        Date-Added = {2006-08-16 10:42:15 -0400},
229 +        Date-Modified = {2006-08-16 10:43:56 -0400},
230 +        Doi = {10.1063/1.1605941},
231 +        Journal = {J. Chem. Phys.},
232 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Aguado_MultipoleEwald_03.pdf},
233 +        Number = {14},
234 +        Pages = {7471-7483},
235 +        Title = {Ewald summation of electrostatic multipole interactions up to the quadrupolar level},
236 +        Volume = {119},
237 +        Year = {2003}}
238 +
239 + @article{Smith98,
240 +        Author = {W. Smith},
241 +        Date-Added = {2006-08-16 10:02:44 -0400},
242 +        Date-Modified = {2006-08-16 10:41:23 -0400},
243 +        Journal = {CCP5 Information Quarterly},
244 +        Number = {46},
245 +        Title = {Point multipoles in the \uppercase{E}wald summation (Revisited)},
246 +        Year = {1998}}
247 +
248 + @book{Stone02,
249 +        Author = {A.~J. Stone},
250 +        Date-Added = {2006-08-14 18:14:32 -0400},
251 +        Date-Modified = {2006-08-14 22:45:20 -0400},
252 +        Editor = {J.~S. Rowlinson},
253 +        Publisher = {Oxford University Press, Inc.},
254 +        Title = {The Theory of Intermolecular Forces},
255 +        Year = {2002}}
256 +
257 + @book{Hirschfelder67,
258 +        Author = {J.~O. Hirschfelder and C.~F. Curtiss and R.~B. Bird},
259 +        Date-Added = {2006-08-14 10:15:21 -0400},
260 +        Date-Modified = {2006-08-14 22:45:43 -0400},
261 +        Editor = {M.~G. Mayer},
262 +        Publisher = {John Wiley \& Sons, Inc.},
263 +        Title = {Molecular Theory of Gases and Liquids},
264 +        Year = {1967}}
265 +
266 + @article{Ryckaert77,
267 +        Author = {J.-P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen},
268 +        Date-Added = {2006-08-06 17:05:44 -0400},
269 +        Date-Modified = {2006-08-06 17:08:35 -0400},
270 +        Doi = {10.1016/0021-9991(77)90098-5},
271 +        Journal = {J. Comput. Phys.},
272 +        Month = {March},
273 +        Number = {3},
274 +        Pages = {327-341},
275 +        Title = {Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of {\it n}-alkanes},
276 +        Volume = {23},
277 +        Year = {1977}}
278 +
279 + @article{Impey82,
280 +        Author = {R.~W. Impey and P.~A. Madden and I.~R. McDonald},
281 +        Date-Added = {2006-08-03 08:42:21 -0400},
282 +        Date-Modified = {2006-08-03 08:44:06 -0400},
283 +        Journal = {Mol. Phys.},
284 +        Number = {3},
285 +        Pages = {513-539},
286 +        Title = {Spectroscopic and transport properties of water: \uppercase{M}odel calculations and the interpretation of experimental results},
287 +        Volume = {46},
288 +        Year = {1982}}
289 +
290 + @article{Laasonen93,
291 +        Author = {K. Laasonen and M. Sprik and M. Parrinello and R. Car},
292 +        Date-Added = {2006-08-02 08:23:46 -0400},
293 +        Date-Modified = {2006-08-02 13:09:18 -0400},
294 +        Journal = {J. Chem. Phys.},
295 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Laasonen_AbInitioLiquidWater_93.pdf},
296 +        Number = {11},
297 +        Pages = {9080-9089},
298 +        Title = {``{\it \uppercase{A}b initio}" liquid water},
299 +        Volume = {99},
300 +        Year = {1993}}
301 +
302 + @article{Donchev06,
303 +        Author = {A.~G. Donchev and N.~G. Galkin and A.~A. Illarionov and O.~V. Khoruzhii and M.~A. Olevanov and M.~V. Subbotin and V.~I. Tarasov},
304 +        Date-Added = {2006-08-02 08:15:11 -0400},
305 +        Date-Modified = {2006-08-02 08:16:16 -0400},
306 +        Doi = {www.pnas.org/cgi/doi/10.1073/pnas.0602982103},
307 +        Journal = {Proc. Natl. Acad. Sci. USA},
308 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2006/Donchev_QuantumWater_06.pdf},
309 +        Number = {23},
310 +        Pages = {8613-8617},
311 +        Title = {Water properties from first principles: \uppercase{S}imulations by a general-purpose quantum mechanical polarizable force field},
312 +        Volume = {103},
313 +        Year = {2006}}
314 +
315 + @article{Malmberg56,
316 +        Author = {G.~G. Malmberg and A.~A. Maryott},
317 +        Date-Added = {2006-08-01 17:19:00 -0400},
318 +        Date-Modified = {2006-08-02 13:16:04 -0400},
319 +        Journal = {J. Res. Natl. Bur. Stand.},
320 +        Number = {1},
321 +        Pages = {1-8},
322 +        Title = {Dielectric constant of Water from 0$^\circ$ to 100$^\circ$\uppercase{C}},
323 +        Volume = {56},
324 +        Year = {1956}}
325 +
326 + @article{Neumann80,
327 +        Author = {M. Neumann and O. Steinhauser},
328 +        Date-Added = {2006-08-01 17:17:52 -0400},
329 +        Date-Modified = {2006-08-01 17:18:51 -0400},
330 +        Journal = {Mol. Phys.},
331 +        Number = {2},
332 +        Pages = {437-454},
333 +        Title = {The influence of boundary conditions used in machine simulations on the structure of polar systems},
334 +        Volume = {39},
335 +        Year = {1980}}
336 +
337 + @article{Neumann83,
338 +        Author = {M. Neumann},
339 +        Date-Added = {2006-08-01 17:16:51 -0400},
340 +        Date-Modified = {2006-08-01 17:17:45 -0400},
341 +        Journal = {Mol. Phys.},
342 +        Number = {4},
343 +        Pages = {841-858},
344 +        Title = {Dipole moment fluctuation formulas in computer simulations of polar systems},
345 +        Volume = {50},
346 +        Year = {1983}}
347 +
348 + @article{Kell75,
349 +        Author = {G.~S. Kell},
350 +        Date-Added = {2006-08-01 16:05:09 -0400},
351 +        Date-Modified = {2006-08-02 13:17:29 -0400},
352 +        Journal = {J. Chem. Eng. Data},
353 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Kell_CompressibilityAndExpansivityOfH2O_75.pdf},
354 +        Number = {1},
355 +        Pages = {91-105},
356 +        Title = {Density, Thermal Expansivity, and Compressibility of Liquid Water from 0$^\circ$ to 150$^\circ$\uppercase{C}: \uppercase{C}orrelations and Tables for Atmospheric Pressure and Saturation Reviewed and Expressed on 1968 Temperature Scale},
357 +        Volume = {20},
358 +        Year = {1975}}
359 +
360 + @article{Wagner02,
361 +        Author = {W. Wagner and A. Pru{\ss}},
362 +        Date-Added = {2006-08-01 16:02:31 -0400},
363 +        Date-Modified = {2006-08-02 13:16:50 -0400},
364 +        Journal = {J. Phys. Chem. Ref. Data},
365 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Wagner_ThermodynamicPropertiesOfH2O_03.pdf},
366 +        Number = {2},
367 +        Pages = {387-535},
368 +        Title = {The \uppercase{IAPWS} Formulation 1995 for the Thermodynamic Properties of Ordinary Water Substance for General and Scientific Use},
369 +        Volume = {31},
370 +        Year = {2002}}
371 +
372 + @article{Neumann84,
373 +        Author = {M. Neumann and O. Steinhauser and G.~S. Pawley},
374 +        Date-Added = {2006-07-31 10:22:39 -0400},
375 +        Date-Modified = {2006-07-31 10:24:17 -0400},
376 +        Journal = {Mol. Phys.},
377 +        Number = {1},
378 +        Pages = {97-113},
379 +        Title = {Consistent calculation of the static and frequency-dependent dielectric constant in computer simulations},
380 +        Volume = {52},
381 +        Year = {1984}}
382 +
383 + @article{Neumann85,
384 +        Author = {M. Neumann},
385 +        Date-Added = {2006-07-31 10:19:17 -0400},
386 +        Date-Modified = {2006-08-02 13:17:58 -0400},
387 +        Journal = {J. Chem. Phys.},
388 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/DielectricConst./Neumann_H2ODielConst_85.pdf},
389 +        Number = {12},
390 +        Pages = {5663-5672},
391 +        Title = {The dielectric constant of water. \uppercase{C}omputer simulations with the \uppercase{MCY} potential},
392 +        Volume = {82},
393 +        Year = {1985}}
394  
395 + @book{Berry00,
396 +        Address = {New York},
397 +        Author = {R. Stephen Berry and Stuart A. Rice and John Ross},
398 +        Date-Added = {2006-07-30 14:49:40 -0400},
399 +        Date-Modified = {2006-07-30 14:53:08 -0400},
400 +        Edition = {Second},
401 +        Editor = {Donald G. Truhlar},
402 +        Publisher = {Oxford University Press, Inc.},
403 +        Series = {Topics in Physical Chemistry},
404 +        Title = {Physical Chemistry},
405 +        Year = {2000}}
406  
407   @article{Sorenson00,
408          Author = {J.~M. Sorenson and G. Hura and R.~M. Glaeser and T. Head-Gordon},
# Line 93 | Line 452
452   @article{Rick04,
453          Author = {S.~W. Rick},
454          Date-Added = {2006-07-18 10:49:48 -0400},
455 <        Date-Modified = {2006-07-18 14:23:07 -0400},
455 >        Date-Modified = {2006-08-19 19:34:36 -0400},
456          Doi = {10.1063/1.1652434},
457          Journal = {J. Chem. Phys.},
458 <        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Rick_TIP5P-Ew_04.pdf},
458 >        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Rick_TIP5P-E_04.pdf},
459          Number = {13},
460          Pages = {6085-6093},
461          Title = {A reoptimization of the five-site water potential (\uppercase{TIP5P}) for use with \uppercase{E}wald sums},
# Line 869 | Line 1228
1228          Title = {On the relation between self-diffusion and viscosity of liquids},
1229          Volume = 79,
1230          Year = 1983}
872 –
873 – @article{Zwanzig88,
874 –        Author = {R. Zwanzig},
875 –        Journal = {Proc. Natl. Acad. Sci. USA},
876 –        Pages = 2029,
877 –        Title = {Diffusion in rough potential},
878 –        Volume = 85,
879 –        Year = 1988}
1231  
1232   @article{Stillinger95,
1233          Author = {F.~H. Stillinger},
# Line 913 | Line 1264
1264          Volume = 106,
1265          Year = 1997}
1266  
916 – @article{Spath96,
917 –        Author = {B.~W. Spath and W.~H. Miller},
918 –        Journal = jcp,
919 –        Pages = 95,
920 –        Title = {SEMICLASSICAL CALCULATION OF CUMULATIVE REACTION PROBABILITIES},
921 –        Volume = 104,
922 –        Year = 1996}
923 –
1267   @book{Warshel91,
1268          Address = {New York},
1269          Author = {Arieh Warshel},
# Line 972 | Line 1315
1315          Title = {Mixed semiclassical-classical approaches to the dynamics of complex molecular systems},
1316          Year = 1997}
1317  
975 – @article{Keshavamurthy94,
976 –        Author = {S. Keshavamurthy and W.~H. Miller},
977 –        Journal = cpl,
978 –        Pages = 189,
979 –        Title = {ivr},
980 –        Volume = 218,
981 –        Year = 1994}
982 –
983 – @article{Billing75,
984 –        Author = {G.~D. Billing},
985 –        Journal = cpl,
986 –        Pages = 391,
987 –        Title = {ehrenfest},
988 –        Volume = 30,
989 –        Year = 1975}
990 –
1318   @article{Chang90,
1319          Author = {Y.-T. Chang and W.~H. Miller},
1320          Journal = jpc,
# Line 1068 | Line 1395
1395          Title = {A perfect quantum error correcting code: 5 bit code correcting a general 1 qubit error to encode 1 qubit of information},
1396          Volume = 98,
1397          Year = 1996}
1071 –
1072 – @article{Shor95,
1073 –        Author = {P.~W. Shor},
1074 –        Journal = {Phys. Rev. A},
1075 –        Pages = {2493-2496},
1076 –        Title = {SCHEME FOR REDUCING DECOHERENCE IN QUANTUM COMPUTER MEMORY},
1077 –        Volume = 52,
1078 –        Year = 1995}
1398  
1399   @article{Calderbank96,
1400          Author = {A.~R. Calderbank and P.~W. Shor},
# Line 1365 | Line 1684
1684          Title = {Qualitative vs. Quantititative Thinking: \uppercase{A}re we teaching the right thing?},
1685          Volume = 3,
1686          Year = 1992}
1368 –
1369 – @book{Mazur97,
1370 –        Address = {New Jersey},
1371 –        Author = {Eric Mazur},
1372 –        Date-Modified = {2006-07-18 15:07:06 -0400},
1373 –        Publisher = {Prentice Hall},
1374 –        Title = {Peer Instruction: $\mbox{A}$ User's Manual},
1375 –        Year = 1997}
1687  
1688   @article{Wigner55,
1689          Author = {E.~P. Wigner},
# Line 1617 | Line 1928
1928          Volume = 46,
1929          Year = 1992}
1930  
1620 – @article{Wendt78,
1621 –        Author = {H. Wendt and F.~F. Abraham},
1622 –        Journal = prl,
1623 –        Pages = 1244,
1624 –        Volume = 41,
1625 –        Year = 1978}
1626 –
1931   @article{Lewis91,
1932          Author = {L.~J. Lewis},
1933          Journal = prb,
# Line 1664 | Line 1968
1968          Volume = 24,
1969          Year = 1981}
1970  
1667 – @unpublished{Truhlar00,
1668 –        Author = {D.~G. Truhlar and A. Kohen},
1669 –        Date-Modified = {2006-02-15 16:35:52 -0500},
1670 –        Note = {private correspondence},
1671 –        Year = {2000}}
1672 –
1971   @article{Truhlar78,
1972          Author = {Donald G. Truhlar},
1973          Journal = {J. Chem. Ed.},
# Line 1746 | Line 2044
2044          Pages = {1281-1329},
2045          Title = {Random and Cooperative Sequential Adsorption},
2046          Volume = 65,
1749 –        Year = 1993}
1750 –
1751 – @article{Dwyer1977,
1752 –        Author = {D.~J. Dwyer and G.~W. Simmons and R.~P. Wei},
1753 –        Journal = {Surf. Sci.},
1754 –        Pages = 617,
1755 –        Volume = 64,
1756 –        Year = 1977}
1757 –
1758 – @article{Macritche78,
1759 –        Author = {F. MacRitche},
1760 –        Date-Modified = {2006-02-15 10:27:37 -0500},
1761 –        Journal = {Adv. Protein Chem.},
1762 –        Pages = 283,
1763 –        Volume = 32,
1764 –        Year = 1978}
1765 –
1766 – @article{Feder80,
1767 –        Author = {J. Feder},
1768 –        Date-Modified = {2006-02-15 10:17:21 -0500},
1769 –        Journal = {J. Theor. Biol.},
1770 –        Pages = 237,
1771 –        Volume = 87,
1772 –        Year = 1980}
1773 –
1774 – @article{Ramsden93,
1775 –        Author = {J.~J. Ramsden},
1776 –        Date-Modified = {2006-02-15 10:31:03 -0500},
1777 –        Journal = prl,
1778 –        Pages = 295,
1779 –        Volume = 71,
2047          Year = 1993}
2048  
2049 < @article{Egelhoff89,
1783 <        Author = {W.~F. Egelhoff and I. Jacob},
1784 <        Date-Modified = {2006-02-15 10:16:54 -0500},
1785 <        Journal = prl,
1786 <        Pages = 921,
1787 <        Volume = 62,
1788 <        Year = 1989}
1789 <
1790 < @article{Viot92a,
2049 > @article{Viot92,
2050          Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot},
2051 <        Date-Modified = {2006-07-18 14:57:12 -0400},
2051 >        Date-Modified = {2006-08-24 10:33:17 -0400},
2052          Journal = jpc,
2053          Pages = {5212-5218},
2054          Title = {RANDOM SEQUENTIAL ADSORPTION OF ANISOTROPIC PARTICLES 1. \uppercase{J}AMMING LIMIT AND ASYMPTOTIC-BEHAVIOR},
# Line 1805 | Line 2064
2064          Volume = 191,
2065          Year = 1992}
2066  
1808 – @article{Dobson1987,
1809 –        Author = {B.~W. Dobson},
1810 –        Journal = prb,
1811 –        Pages = 1068,
1812 –        Volume = 36,
1813 –        Year = 1987}
1814 –
2067   @article{Boyer95,
2068          Author = {D. Boyer and P. Viot and G. Tarjus and J. Talbot},
2069          Date-Modified = {2006-02-15 10:15:52 -0500},
# Line 1848 | Line 2100
2100          Volume = 14,
2101          Year = 1998}
2102  
1851 – @article{Solomon86,
1852 –        Author = {H. Solomon and H. Weiner},
1853 –        Date-Modified = {2006-02-15 10:10:38 -0500},
1854 –        Journal = {Comm. Statistics A},
1855 –        Pages = {2571-2607},
1856 –        Title = {A REVIEW OF THE PACKING PROBLEM},
1857 –        Volume = 15,
1858 –        Year = 1986}
1859 –
2103   @article{Bonnier93,
2104          Author = {B. Bonnier and M. Hontebeyrie and C. Meyers},
2105          Date-Modified = {2006-02-15 10:08:35 -0500},
# Line 1874 | Line 2117
2117          Title = {Understanding Molecular Simulation: \uppercase{F}rom Algorithms to Applications},
2118          Year = 1996}
2119  
2120 < @article{Dullweber1997,
2120 > @article{Dullweber97,
2121          Author = {A. Dullweber and B. Leimkuhler and R. McLachlan},
2122 +        Date-Modified = {2006-08-24 09:55:06 -0400},
2123          Journal = jcp,
2124          Number = 15,
2125          Pages = {5840-5851},
# Line 1903 | Line 2147
2147  
2148   @article{Liu96b,
2149          Author = {Y. Liu and T. Ichiye},
2150 <        Date-Modified = {2006-07-18 15:06:06 -0400},
2150 >        Date-Modified = {2006-08-22 14:42:05 -0400},
2151          Journal = jpc,
2152 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/SSDStuff/Ichiye_SSD_96.pdf},
2153          Pages = {2723-2730},
2154          Title = {Soft sticky dipole potential for liquid water: \uppercase{a} new model},
2155          Volume = 100,
2156          Year = 1996}
2157  
2158 < @article{Liu96a,
2158 > @article{Liu96,
2159          Author = {Y. Liu and T. Ichiye},
2160 <        Date-Modified = {2006-02-15 10:27:01 -0500},
2160 >        Date-Modified = {2006-08-22 14:39:40 -0400},
2161          Journal = {Chem. Phys. Lett.},
2162          Pages = {334-340},
2163          Title = {The static dielectric constant of the soft sticky dipole model of liquid water: $\mbox{Monte Carlo}$ simulation},
# Line 1921 | Line 2166
2166  
2167   @article{Chandra99,
2168          Author = {A. Chandra and T. Ichiye},
2169 <        Date-Modified = {2006-07-18 15:01:30 -0400},
2169 >        Date-Modified = {2006-08-22 14:41:50 -0400},
2170          Journal = {J. Chem. Phys.},
2171 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/SSDStuff/Chandra_SSDdynamics_99.pdf},
2172          Number = 6,
2173          Pages = {2701-2709},
2174          Title = {Dynamical properties of the soft sticky dipole model of water: \uppercase{M}olecular dynamics simulation},
# Line 2336 | Line 2582
2582          Title = {A high-quality x-ray scattering experiment on liquid water at ambient conditions},
2583          Volume = 113,
2584          Year = 2000}
2339 –
2340 – @article{Ryckaert77,
2341 –        Author = {J.~P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen},
2342 –        Date-Modified = {2006-07-18 15:12:28 -0400},
2343 –        Journal = {Journal of Computational Physics},
2344 –        Pages = {327-341},
2345 –        Title = {Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: $\mbox{M}$olecular Dynamics of $n$-Alkanes},
2346 –        Volume = 23,
2347 –        Year = 1977}
2585  
2586   @inbook{Fowles99,
2587          Author = {G.~R. Fowles and G.~L. Cassiday},
# Line 2375 | Line 2612
2612  
2613   @article{Holz00,
2614          Author = {M. Holz and S.~R. Heil and A. Sacco},
2615 +        Date-Modified = {2006-08-06 14:07:16 -0400},
2616          Journal = {Phys. Chem. Chem. Phys.},
2617 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Holz_SelfDiffusionOfWaterFromNMR_00.pdf},
2618          Pages = {4740-4742},
2619 <        Title = {Temperature-dependent self-diffusion coefficients of water and six selected molecular liquids for calibration in accurate $^1${\sc h} {\sc nmr pfg} measurements},
2619 >        Title = {Temperature-dependent self-diffusion coefficients of water and six selected molecular liquids for calibration in accurate $^1$\uppercase{h nmr pfg} measurements},
2620          Volume = 2,
2621          Year = 2000}
2622  
# Line 2557 | Line 2796
2796          Address = {Dordrecht},
2797          Author = {H.~J.~C. Berendsen and J.~P.~M. Postma and W.~F. {van~Gunsteren} and J. Hermans},
2798          Booktitle = {Intermolecular Forces},
2799 +        Date-Modified = {2006-08-02 13:23:53 -0400},
2800          Editor = {B. Pullman},
2801 <        Pages = 331,
2801 >        Pages = {331-342},
2802          Publisher = {Reidel},
2803          Title = {Simple Point Charge Water},
2804          Year = 1981}
# Line 2620 | Line 2860
2860  
2861   @article{Onsager36,
2862          Author = {L. Onsager},
2863 +        Date-Modified = {2006-08-02 10:49:57 -0400},
2864          Journal = jacs,
2865 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Onsager_electMoments_36.pdf},
2866          Pages = {1486-1493},
2867          Title = {Electric Moments of Molecules in Liquids},
2868          Volume = 58,
# Line 2653 | Line 2895
2895  
2896   @article{Vlot99,
2897          Author = {M.~J. Vlot and J. Huinink and J.~P. van~der~Eerden},
2898 <        Date-Modified = {2006-07-18 15:18:07 -0400},
2898 >        Date-Modified = {2006-08-26 23:57:49 -0400},
2899          Journal = jcp,
2900          Number = 1,
2901          Pages = {55-61},
2902 <        Title = {Free energy calculations on systems of rigid molecules: $\mbox{A}$n application to the $\mbox{TIP4P}$ model of $\mbox{H}_2$\mbox{O}$},
2902 >        Title = {Free energy calculations on systems of rigid molecules: \uppercase{A}n application to the \uppercase{TIP4P} model of \uppercase{H}$_2$\uppercase{O}},
2903          Volume = 110,
2904          Year = 1999}
2905  
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2933          Volume = 189,
2934          Year = 1992}
2935  
2694 – @article{Mezei92,
2695 –        Author = {M. Mezei},
2696 –        Journal = {J. Comput. Chem.},
2697 –        Pages = 651,
2698 –        Title = {Don't Remember},
2699 –        Volume = 13,
2700 –        Year = 1992}
2701 –
2702 – @article{Widom63,
2703 –        Author = {B. Widom},
2704 –        Journal = jcp,
2705 –        Pages = 2808,
2706 –        Title = {Particle insertion},
2707 –        Volume = 39,
2708 –        Year = 1963}
2709 –
2936   @article{Clancy94,
2937          Author = {L.~A. B\'{a}ez and P. Clancy},
2938          Journal = jcp,

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