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Revision 2957 by chrisfen, Fri Jul 21 22:18:24 2006 UTC vs.
Revision 2978 by chrisfen, Sun Aug 27 19:34:53 2006 UTC

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3  
4  
5 < %% Created for Chris Fennell at 2006-07-21 11:45:23 -0400
5 > %% Created for Chris Fennell at 2006-08-27 13:56:37 -0400
6  
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43   @string{prl = {Phys. Rev. Lett.}}
44  
45   @string{rmp = {Rev. Mod. Phys.}}
46 +
47 +
48 + @article{Kindt96,
49 +        Author = {J.~T. Kindt and C.~A. Schmuttenmaer},
50 +        Date-Added = {2006-08-27 13:55:26 -0400},
51 +        Date-Modified = {2006-08-27 13:56:35 -0400},
52 +        Journal = {J. Phys. Chem.},
53 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Kindt_FarIRDielectricOfPolarLiquids_96.pdf},
54 +        Number = {24},
55 +        Pages = {10373-10379},
56 +        Title = {Far-Infrared Dielectric Properties of Polar Liquids Probed by Femtosecond Terahertz Pulse Spectroscopy},
57 +        Volume = {100},
58 +        Year = {1996}}
59 +
60 + @article{Freddolino06,
61 +        Author = {P.~L. Freddolino and A.~S. Arkhipov and S.~B. Larson and A. McPherson and K. Schulten},
62 +        Date-Added = {2006-08-24 16:11:43 -0400},
63 +        Date-Modified = {2006-08-24 16:14:03 -0400},
64 +        Doi = {10.1016/j.str.2005.11.014},
65 +        Journal = {Structure},
66 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2006/Freddolino_VirusSimulation_06.pdf},
67 +        Pages = {437-449},
68 +        Title = {Molecular Dynamics Simulations of the Complete Satellite Tobacco Mosaic Virus},
69 +        Volume = {14},
70 +        Year = {2006}}
71 +
72 + @article{Gillen72,
73 +        Author = {K.~T. Gillen and D.~C. Douglas and M.~J.~R. Hoch},
74 +        Date-Added = {2006-08-24 10:40:48 -0400},
75 +        Date-Modified = {2006-08-24 10:41:10 -0400},
76 +        Journal = jcp,
77 +        Pages = {5117-5119},
78 +        Title = {Self-Diffusion in Liquid Water to $-31^\circ$~\uppercase{C}},
79 +        Volume = 57,
80 +        Year = 1972}
81 +
82 + @book{Rothschild84,
83 +        Address = {New York},
84 +        Author = {W.~G. Rothschild},
85 +        Date-Added = {2006-08-24 10:35:25 -0400},
86 +        Date-Modified = {2006-08-24 10:35:25 -0400},
87 +        Publisher = {John Wiley \& Sons, Inc.},
88 +        Title = {Dynamics of Molecular Liquids},
89 +        Year = 1984}
90 +
91 + @article{Krynicki66,
92 +        Author = {K. Krynicki},
93 +        Date-Added = {2006-08-24 10:34:29 -0400},
94 +        Date-Modified = {2006-08-24 10:35:05 -0400},
95 +        Journal = {Physica},
96 +        Pages = {167-178},
97 +        Title = {PROTON SPIN-LATTICE RELAXATION IN PURE WATER BETWEEN 0$^\circ$\uppercase{C} AND 100$^\circ$\uppercase{C}},
98 +        Volume = 32,
99 +        Year = 1966}
100 +
101 + @book{Eisenberg69,
102 +        Address = {Oxford},
103 +        Author = {D. Eisenberg and W. Kauzmann},
104 +        Date-Added = {2006-08-24 10:33:59 -0400},
105 +        Date-Modified = {2006-08-24 10:33:59 -0400},
106 +        Publisher = {Oxford University Press},
107 +        Title = {The Structure and Properties of Water},
108 +        Year = 1969}
109 +
110 + @article{Mills73,
111 +        Author = {R. Mills},
112 +        Date-Added = {2006-08-24 10:24:33 -0400},
113 +        Date-Modified = {2006-08-24 10:25:04 -0400},
114 +        Journal = jpc,
115 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Mills_Diffuse_73.pdf},
116 +        Number = 5,
117 +        Pages = {685-688},
118 +        Title = {Self-Diffusion in Normal and Heavy Water in the Range 1-45$^\circ$},
119 +        Volume = 77,
120 +        Year = 1973}
121 +
122 + @article{Barriol64,
123 +        Author = {J. Barriol and A. Weisbecker},
124 +        Date-Added = {2006-08-24 10:23:25 -0400},
125 +        Date-Modified = {2006-08-24 10:23:39 -0400},
126 +        Journal = {Compt. Rend. Acad. Sc. Paris},
127 +        Pages = {4643-4645},
128 +        Title = {Contribution \`{a} l'\'{e}tude di\'{e}lectrique des liquides associ\'{e}s par liaisons hydrog\'{e}ne},
129 +        Volume = 259,
130 +        Year = 1964}
131 +
132 + @article{Badyal00,
133 +        Author = {Y.~S. Badyal and M.~-L. Saboungi and D.~L. Price and S.~D. Shastri and D.~R. Haeffner and A.~K. Soper},
134 +        Date-Added = {2006-08-24 10:21:10 -0400},
135 +        Date-Modified = {2006-08-24 10:22:49 -0400},
136 +        Journal = jcp,
137 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Badyal_ElectronDistributionInH2O_00.pdf},
138 +        Number = 21,
139 +        Pages = {9206-9208},
140 +        Title = {Electron distribution in water},
141 +        Volume = 112,
142 +        Year = 2000}
143 +
144 + @article{Gubskaya02,
145 +        Author = {A.~V. Gubskaya and P.~G. Kusalik},
146 +        Date-Added = {2006-08-24 10:17:41 -0400},
147 +        Date-Modified = {2006-08-24 10:18:37 -0400},
148 +        Journal = jcp,
149 +        Number = 11,
150 +        Pages = {5290-5302},
151 +        Title = {The total molecular dipole moment for liquid water},
152 +        Volume = 117,
153 +        Year = 2002}
154 +
155 + @article{Sprik91,
156 +        Author = {M. Sprik},
157 +        Date-Added = {2006-08-24 10:10:41 -0400},
158 +        Date-Modified = {2006-08-24 10:17:06 -0400},
159 +        Journal = jcp,
160 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Sprik_HBondingAndStaticDielectricInH2O_91.pdf},
161 +        Number = 9,
162 +        Pages = {6762-6769},
163 +        Title = {Hydrogen bonding and the static dielectric constant in liquid water},
164 +        Volume = 95,
165 +        Year = 1991}
166 +
167 + @article{Nezbeda02,
168 +        Author = {M. Lisal and J. Kolafa and I. Nezbeda},
169 +        Date-Added = {2006-08-24 10:08:19 -0400},
170 +        Date-Modified = {2006-08-24 10:08:37 -0400},
171 +        Journal = jcp,
172 +        Number = 19,
173 +        Pages = {8892-8897},
174 +        Title = {An examination of the five-site potential (\uppercase{TIP5P}) for water},
175 +        Volume = 117,
176 +        Year = 2002}
177 +
178 + @article{Rahman72,
179 +        Author = {A. Rahman and F.~H. Stillinger},
180 +        Date-Added = {2006-08-24 10:03:48 -0400},
181 +        Date-Modified = {2006-08-24 10:09:05 -0400},
182 +        Journal = jcp,
183 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Ice_Simulations/Rahman_ProtonDistributionInIce_72.pdf},
184 +        Number = 9,
185 +        Pages = {4009-4017},
186 +        Title = {Proton Distribution in Ice and the \uppercase{K}irkwood Correlation Factor},
187 +        Volume = 57,
188 +        Year = 1972}
189 +
190 + @article{Bernal33,
191 +        Author = {J.~D. Bernal and R.~H. Fowler},
192 +        Date-Added = {2006-08-24 09:58:00 -0400},
193 +        Date-Modified = {2006-08-24 09:59:43 -0400},
194 +        Journal = {J. Chem. Phys.},
195 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/OldPapers/Bernal_TheoryOfWater_33.pdf},
196 +        Number = {8},
197 +        Pages = {515-548},
198 +        Title = {A Theory of Water and Ionic Solution with Particular Reference to Hydrogen and Hydroxyl Ions},
199 +        Volume = {1},
200 +        Year = {1933}}
201 +
202 + @article{Hoover86,
203 +        Author = {W.~G. Hoover},
204 +        Date-Added = {2006-08-24 09:53:21 -0400},
205 +        Date-Modified = {2006-08-24 09:53:21 -0400},
206 +        Journal = pra,
207 +        Number = 3,
208 +        Pages = {2499-2500},
209 +        Title = {Constant-pressure equations of motion},
210 +        Volume = 34,
211 +        Year = 1986}
212 +
213 + @article{Fennell06,
214 +        Author = {C.~J. Fennell and J.~D. Gezelter},
215 +        Date-Added = {2006-08-24 09:49:57 -0400},
216 +        Date-Modified = {2006-08-24 09:49:57 -0400},
217 +        Doi = {10.1063/1.2206581},
218 +        Journal = {J. Chem. Phys.},
219 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Fennell_PairwiseSummationMethods_06.pdf},
220 +        Number = {23},
221 +        Pages = {234104(12)},
222 +        Rating = {5},
223 +        Read = {Yes},
224 +        Title = {Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics},
225 +        Volume = {124},
226 +        Year = {2006}}
227 +
228 + @article{Evans77b,
229 +        Author = {D.~J. Evans and S. Murad},
230 +        Date-Added = {2006-08-22 14:23:16 -0400},
231 +        Date-Modified = {2006-08-22 14:23:16 -0400},
232 +        Journal = {Mol. Phys.},
233 +        Pages = {327-331},
234 +        Title = {Singularity-free algorithm for molecular dynamics simulation of rigid polyatomics},
235 +        Volume = 34,
236 +        Year = 1977}
237 +
238 + @article{Aguado03,
239 +        Author = {A. Aguado and P.~A. Madden},
240 +        Date-Added = {2006-08-16 10:42:15 -0400},
241 +        Date-Modified = {2006-08-16 10:43:56 -0400},
242 +        Doi = {10.1063/1.1605941},
243 +        Journal = {J. Chem. Phys.},
244 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Aguado_MultipoleEwald_03.pdf},
245 +        Number = {14},
246 +        Pages = {7471-7483},
247 +        Title = {Ewald summation of electrostatic multipole interactions up to the quadrupolar level},
248 +        Volume = {119},
249 +        Year = {2003}}
250 +
251 + @article{Smith98,
252 +        Author = {W. Smith},
253 +        Date-Added = {2006-08-16 10:02:44 -0400},
254 +        Date-Modified = {2006-08-16 10:41:23 -0400},
255 +        Journal = {CCP5 Information Quarterly},
256 +        Number = {46},
257 +        Title = {Point multipoles in the \uppercase{E}wald summation (Revisited)},
258 +        Year = {1998}}
259 +
260 + @book{Stone02,
261 +        Author = {A.~J. Stone},
262 +        Date-Added = {2006-08-14 18:14:32 -0400},
263 +        Date-Modified = {2006-08-14 22:45:20 -0400},
264 +        Editor = {J.~S. Rowlinson},
265 +        Publisher = {Oxford University Press, Inc.},
266 +        Title = {The Theory of Intermolecular Forces},
267 +        Year = {2002}}
268 +
269 + @book{Hirschfelder67,
270 +        Author = {J.~O. Hirschfelder and C.~F. Curtiss and R.~B. Bird},
271 +        Date-Added = {2006-08-14 10:15:21 -0400},
272 +        Date-Modified = {2006-08-14 22:45:43 -0400},
273 +        Editor = {M.~G. Mayer},
274 +        Publisher = {John Wiley \& Sons, Inc.},
275 +        Title = {Molecular Theory of Gases and Liquids},
276 +        Year = {1967}}
277 +
278 + @article{Ryckaert77,
279 +        Author = {J.-P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen},
280 +        Date-Added = {2006-08-06 17:05:44 -0400},
281 +        Date-Modified = {2006-08-06 17:08:35 -0400},
282 +        Doi = {10.1016/0021-9991(77)90098-5},
283 +        Journal = {J. Comput. Phys.},
284 +        Month = {March},
285 +        Number = {3},
286 +        Pages = {327-341},
287 +        Title = {Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of {\it n}-alkanes},
288 +        Volume = {23},
289 +        Year = {1977}}
290 +
291 + @article{Impey82,
292 +        Author = {R.~W. Impey and P.~A. Madden and I.~R. McDonald},
293 +        Date-Added = {2006-08-03 08:42:21 -0400},
294 +        Date-Modified = {2006-08-03 08:44:06 -0400},
295 +        Journal = {Mol. Phys.},
296 +        Number = {3},
297 +        Pages = {513-539},
298 +        Title = {Spectroscopic and transport properties of water: \uppercase{M}odel calculations and the interpretation of experimental results},
299 +        Volume = {46},
300 +        Year = {1982}}
301 +
302 + @article{Laasonen93,
303 +        Author = {K. Laasonen and M. Sprik and M. Parrinello and R. Car},
304 +        Date-Added = {2006-08-02 08:23:46 -0400},
305 +        Date-Modified = {2006-08-02 13:09:18 -0400},
306 +        Journal = {J. Chem. Phys.},
307 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Laasonen_AbInitioLiquidWater_93.pdf},
308 +        Number = {11},
309 +        Pages = {9080-9089},
310 +        Title = {``{\it \uppercase{A}b initio}" liquid water},
311 +        Volume = {99},
312 +        Year = {1993}}
313 +
314 + @article{Donchev06,
315 +        Author = {A.~G. Donchev and N.~G. Galkin and A.~A. Illarionov and O.~V. Khoruzhii and M.~A. Olevanov and M.~V. Subbotin and V.~I. Tarasov},
316 +        Date-Added = {2006-08-02 08:15:11 -0400},
317 +        Date-Modified = {2006-08-02 08:16:16 -0400},
318 +        Doi = {www.pnas.org/cgi/doi/10.1073/pnas.0602982103},
319 +        Journal = {Proc. Natl. Acad. Sci. USA},
320 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/2006/Donchev_QuantumWater_06.pdf},
321 +        Number = {23},
322 +        Pages = {8613-8617},
323 +        Title = {Water properties from first principles: \uppercase{S}imulations by a general-purpose quantum mechanical polarizable force field},
324 +        Volume = {103},
325 +        Year = {2006}}
326  
327 + @article{Malmberg56,
328 +        Author = {G.~G. Malmberg and A.~A. Maryott},
329 +        Date-Added = {2006-08-01 17:19:00 -0400},
330 +        Date-Modified = {2006-08-02 13:16:04 -0400},
331 +        Journal = {J. Res. Natl. Bur. Stand.},
332 +        Number = {1},
333 +        Pages = {1-8},
334 +        Title = {Dielectric constant of Water from 0$^\circ$ to 100$^\circ$\uppercase{C}},
335 +        Volume = {56},
336 +        Year = {1956}}
337  
338 + @article{Neumann80,
339 +        Author = {M. Neumann and O. Steinhauser},
340 +        Date-Added = {2006-08-01 17:17:52 -0400},
341 +        Date-Modified = {2006-08-01 17:18:51 -0400},
342 +        Journal = {Mol. Phys.},
343 +        Number = {2},
344 +        Pages = {437-454},
345 +        Title = {The influence of boundary conditions used in machine simulations on the structure of polar systems},
346 +        Volume = {39},
347 +        Year = {1980}}
348 +
349 + @article{Neumann83,
350 +        Author = {M. Neumann},
351 +        Date-Added = {2006-08-01 17:16:51 -0400},
352 +        Date-Modified = {2006-08-01 17:17:45 -0400},
353 +        Journal = {Mol. Phys.},
354 +        Number = {4},
355 +        Pages = {841-858},
356 +        Title = {Dipole moment fluctuation formulas in computer simulations of polar systems},
357 +        Volume = {50},
358 +        Year = {1983}}
359 +
360 + @article{Kell75,
361 +        Author = {G.~S. Kell},
362 +        Date-Added = {2006-08-01 16:05:09 -0400},
363 +        Date-Modified = {2006-08-02 13:17:29 -0400},
364 +        Journal = {J. Chem. Eng. Data},
365 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Kell_CompressibilityAndExpansivityOfH2O_75.pdf},
366 +        Number = {1},
367 +        Pages = {91-105},
368 +        Title = {Density, Thermal Expansivity, and Compressibility of Liquid Water from 0$^\circ$ to 150$^\circ$\uppercase{C}: \uppercase{C}orrelations and Tables for Atmospheric Pressure and Saturation Reviewed and Expressed on 1968 Temperature Scale},
369 +        Volume = {20},
370 +        Year = {1975}}
371 +
372 + @article{Wagner02,
373 +        Author = {W. Wagner and A. Pru{\ss}},
374 +        Date-Added = {2006-08-01 16:02:31 -0400},
375 +        Date-Modified = {2006-08-02 13:16:50 -0400},
376 +        Journal = {J. Phys. Chem. Ref. Data},
377 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Wagner_ThermodynamicPropertiesOfH2O_03.pdf},
378 +        Number = {2},
379 +        Pages = {387-535},
380 +        Title = {The \uppercase{IAPWS} Formulation 1995 for the Thermodynamic Properties of Ordinary Water Substance for General and Scientific Use},
381 +        Volume = {31},
382 +        Year = {2002}}
383 +
384 + @article{Neumann84,
385 +        Author = {M. Neumann and O. Steinhauser and G.~S. Pawley},
386 +        Date-Added = {2006-07-31 10:22:39 -0400},
387 +        Date-Modified = {2006-07-31 10:24:17 -0400},
388 +        Journal = {Mol. Phys.},
389 +        Number = {1},
390 +        Pages = {97-113},
391 +        Title = {Consistent calculation of the static and frequency-dependent dielectric constant in computer simulations},
392 +        Volume = {52},
393 +        Year = {1984}}
394 +
395 + @article{Neumann85,
396 +        Author = {M. Neumann},
397 +        Date-Added = {2006-07-31 10:19:17 -0400},
398 +        Date-Modified = {2006-08-02 13:17:58 -0400},
399 +        Journal = {J. Chem. Phys.},
400 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/DielectricConst./Neumann_H2ODielConst_85.pdf},
401 +        Number = {12},
402 +        Pages = {5663-5672},
403 +        Title = {The dielectric constant of water. \uppercase{C}omputer simulations with the \uppercase{MCY} potential},
404 +        Volume = {82},
405 +        Year = {1985}}
406 +
407 + @book{Berry00,
408 +        Address = {New York},
409 +        Author = {R. Stephen Berry and Stuart A. Rice and John Ross},
410 +        Date-Added = {2006-07-30 14:49:40 -0400},
411 +        Date-Modified = {2006-07-30 14:53:08 -0400},
412 +        Edition = {Second},
413 +        Editor = {Donald G. Truhlar},
414 +        Publisher = {Oxford University Press, Inc.},
415 +        Series = {Topics in Physical Chemistry},
416 +        Title = {Physical Chemistry},
417 +        Year = {2000}}
418 +
419   @article{Sorenson00,
420          Author = {J.~M. Sorenson and G. Hura and R.~M. Glaeser and T. Head-Gordon},
421          Date-Added = {2006-07-21 11:41:31 -0400},
# Line 93 | Line 464
464   @article{Rick04,
465          Author = {S.~W. Rick},
466          Date-Added = {2006-07-18 10:49:48 -0400},
467 <        Date-Modified = {2006-07-18 14:23:07 -0400},
467 >        Date-Modified = {2006-08-19 19:34:36 -0400},
468          Doi = {10.1063/1.1652434},
469          Journal = {J. Chem. Phys.},
470 <        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Rick_TIP5P-Ew_04.pdf},
470 >        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Rick_TIP5P-E_04.pdf},
471          Number = {13},
472          Pages = {6085-6093},
473          Title = {A reoptimization of the five-site water potential (\uppercase{TIP5P}) for use with \uppercase{E}wald sums},
# Line 870 | Line 1241
1241          Volume = 79,
1242          Year = 1983}
1243  
873 – @article{Zwanzig88,
874 –        Author = {R. Zwanzig},
875 –        Journal = {Proc. Natl. Acad. Sci. USA},
876 –        Pages = 2029,
877 –        Title = {Diffusion in rough potential},
878 –        Volume = 85,
879 –        Year = 1988}
880 –
1244   @article{Stillinger95,
1245          Author = {F.~H. Stillinger},
1246          Journal = {Science},
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1277          Year = 1997}
1278  
916 – @article{Spath96,
917 –        Author = {B.~W. Spath and W.~H. Miller},
918 –        Journal = jcp,
919 –        Pages = 95,
920 –        Title = {SEMICLASSICAL CALCULATION OF CUMULATIVE REACTION PROBABILITIES},
921 –        Volume = 104,
922 –        Year = 1996}
923 –
1279   @book{Warshel91,
1280          Address = {New York},
1281          Author = {Arieh Warshel},
# Line 971 | Line 1326
1326          Pages = 916,
1327          Title = {Mixed semiclassical-classical approaches to the dynamics of complex molecular systems},
1328          Year = 1997}
974 –
975 – @article{Keshavamurthy94,
976 –        Author = {S. Keshavamurthy and W.~H. Miller},
977 –        Journal = cpl,
978 –        Pages = 189,
979 –        Title = {ivr},
980 –        Volume = 218,
981 –        Year = 1994}
982 –
983 – @article{Billing75,
984 –        Author = {G.~D. Billing},
985 –        Journal = cpl,
986 –        Pages = 391,
987 –        Title = {ehrenfest},
988 –        Volume = 30,
989 –        Year = 1975}
1329  
1330   @article{Chang90,
1331          Author = {Y.-T. Chang and W.~H. Miller},
# Line 1068 | Line 1407
1407          Title = {A perfect quantum error correcting code: 5 bit code correcting a general 1 qubit error to encode 1 qubit of information},
1408          Volume = 98,
1409          Year = 1996}
1071 –
1072 – @article{Shor95,
1073 –        Author = {P.~W. Shor},
1074 –        Journal = {Phys. Rev. A},
1075 –        Pages = {2493-2496},
1076 –        Title = {SCHEME FOR REDUCING DECOHERENCE IN QUANTUM COMPUTER MEMORY},
1077 –        Volume = 52,
1078 –        Year = 1995}
1410  
1411   @article{Calderbank96,
1412          Author = {A.~R. Calderbank and P.~W. Shor},
# Line 1365 | Line 1696
1696          Title = {Qualitative vs. Quantititative Thinking: \uppercase{A}re we teaching the right thing?},
1697          Volume = 3,
1698          Year = 1992}
1368 –
1369 – @book{Mazur97,
1370 –        Address = {New Jersey},
1371 –        Author = {Eric Mazur},
1372 –        Date-Modified = {2006-07-18 15:07:06 -0400},
1373 –        Publisher = {Prentice Hall},
1374 –        Title = {Peer Instruction: $\mbox{A}$ User's Manual},
1375 –        Year = 1997}
1699  
1700   @article{Wigner55,
1701          Author = {E.~P. Wigner},
# Line 1616 | Line 1939
1939          Title = {Electronic properties of single-phased metastable Ag-Cu alloys},
1940          Volume = 46,
1941          Year = 1992}
1619 –
1620 – @article{Wendt78,
1621 –        Author = {H. Wendt and F.~F. Abraham},
1622 –        Journal = prl,
1623 –        Pages = 1244,
1624 –        Volume = 41,
1625 –        Year = 1978}
1942  
1943   @article{Lewis91,
1944          Author = {L.~J. Lewis},
# Line 1664 | Line 1980
1980          Volume = 24,
1981          Year = 1981}
1982  
1667 – @unpublished{Truhlar00,
1668 –        Author = {D.~G. Truhlar and A. Kohen},
1669 –        Date-Modified = {2006-02-15 16:35:52 -0500},
1670 –        Note = {private correspondence},
1671 –        Year = {2000}}
1672 –
1983   @article{Truhlar78,
1984          Author = {Donald G. Truhlar},
1985          Journal = {J. Chem. Ed.},
# Line 1746 | Line 2056
2056          Pages = {1281-1329},
2057          Title = {Random and Cooperative Sequential Adsorption},
2058          Volume = 65,
1749 –        Year = 1993}
1750 –
1751 – @article{Dwyer1977,
1752 –        Author = {D.~J. Dwyer and G.~W. Simmons and R.~P. Wei},
1753 –        Journal = {Surf. Sci.},
1754 –        Pages = 617,
1755 –        Volume = 64,
1756 –        Year = 1977}
1757 –
1758 – @article{Macritche78,
1759 –        Author = {F. MacRitche},
1760 –        Date-Modified = {2006-02-15 10:27:37 -0500},
1761 –        Journal = {Adv. Protein Chem.},
1762 –        Pages = 283,
1763 –        Volume = 32,
1764 –        Year = 1978}
1765 –
1766 – @article{Feder80,
1767 –        Author = {J. Feder},
1768 –        Date-Modified = {2006-02-15 10:17:21 -0500},
1769 –        Journal = {J. Theor. Biol.},
1770 –        Pages = 237,
1771 –        Volume = 87,
1772 –        Year = 1980}
1773 –
1774 – @article{Ramsden93,
1775 –        Author = {J.~J. Ramsden},
1776 –        Date-Modified = {2006-02-15 10:31:03 -0500},
1777 –        Journal = prl,
1778 –        Pages = 295,
1779 –        Volume = 71,
2059          Year = 1993}
2060  
2061 < @article{Egelhoff89,
1783 <        Author = {W.~F. Egelhoff and I. Jacob},
1784 <        Date-Modified = {2006-02-15 10:16:54 -0500},
1785 <        Journal = prl,
1786 <        Pages = 921,
1787 <        Volume = 62,
1788 <        Year = 1989}
1789 <
1790 < @article{Viot92a,
2061 > @article{Viot92,
2062          Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot},
2063 <        Date-Modified = {2006-07-18 14:57:12 -0400},
2063 >        Date-Modified = {2006-08-24 10:33:17 -0400},
2064          Journal = jpc,
2065          Pages = {5212-5218},
2066          Title = {RANDOM SEQUENTIAL ADSORPTION OF ANISOTROPIC PARTICLES 1. \uppercase{J}AMMING LIMIT AND ASYMPTOTIC-BEHAVIOR},
# Line 1804 | Line 2075
2075          Title = {SATURATION COVERAGE IN RANDOM SEQUENTIAL ADSORPTION OF VERY ELONGATED PARTICLES},
2076          Volume = 191,
2077          Year = 1992}
1807 –
1808 – @article{Dobson1987,
1809 –        Author = {B.~W. Dobson},
1810 –        Journal = prb,
1811 –        Pages = 1068,
1812 –        Volume = 36,
1813 –        Year = 1987}
2078  
2079   @article{Boyer95,
2080          Author = {D. Boyer and P. Viot and G. Tarjus and J. Talbot},
# Line 1848 | Line 2112
2112          Volume = 14,
2113          Year = 1998}
2114  
1851 – @article{Solomon86,
1852 –        Author = {H. Solomon and H. Weiner},
1853 –        Date-Modified = {2006-02-15 10:10:38 -0500},
1854 –        Journal = {Comm. Statistics A},
1855 –        Pages = {2571-2607},
1856 –        Title = {A REVIEW OF THE PACKING PROBLEM},
1857 –        Volume = 15,
1858 –        Year = 1986}
1859 –
2115   @article{Bonnier93,
2116          Author = {B. Bonnier and M. Hontebeyrie and C. Meyers},
2117          Date-Modified = {2006-02-15 10:08:35 -0500},
# Line 1874 | Line 2129
2129          Title = {Understanding Molecular Simulation: \uppercase{F}rom Algorithms to Applications},
2130          Year = 1996}
2131  
2132 < @article{Dullweber1997,
2132 > @article{Dullweber97,
2133          Author = {A. Dullweber and B. Leimkuhler and R. McLachlan},
2134 +        Date-Modified = {2006-08-24 09:55:06 -0400},
2135          Journal = jcp,
2136          Number = 15,
2137          Pages = {5840-5851},
# Line 1903 | Line 2159
2159  
2160   @article{Liu96b,
2161          Author = {Y. Liu and T. Ichiye},
2162 <        Date-Modified = {2006-07-18 15:06:06 -0400},
2162 >        Date-Modified = {2006-08-22 14:42:05 -0400},
2163          Journal = jpc,
2164 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/SSDStuff/Ichiye_SSD_96.pdf},
2165          Pages = {2723-2730},
2166          Title = {Soft sticky dipole potential for liquid water: \uppercase{a} new model},
2167          Volume = 100,
2168          Year = 1996}
2169  
2170 < @article{Liu96a,
2170 > @article{Liu96,
2171          Author = {Y. Liu and T. Ichiye},
2172 <        Date-Modified = {2006-02-15 10:27:01 -0500},
2172 >        Date-Modified = {2006-08-22 14:39:40 -0400},
2173          Journal = {Chem. Phys. Lett.},
2174          Pages = {334-340},
2175          Title = {The static dielectric constant of the soft sticky dipole model of liquid water: $\mbox{Monte Carlo}$ simulation},
# Line 1921 | Line 2178
2178  
2179   @article{Chandra99,
2180          Author = {A. Chandra and T. Ichiye},
2181 <        Date-Modified = {2006-07-18 15:01:30 -0400},
2181 >        Date-Modified = {2006-08-22 14:41:50 -0400},
2182          Journal = {J. Chem. Phys.},
2183 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/SSDStuff/Chandra_SSDdynamics_99.pdf},
2184          Number = 6,
2185          Pages = {2701-2709},
2186          Title = {Dynamical properties of the soft sticky dipole model of water: \uppercase{M}olecular dynamics simulation},
# Line 2336 | Line 2594
2594          Title = {A high-quality x-ray scattering experiment on liquid water at ambient conditions},
2595          Volume = 113,
2596          Year = 2000}
2339 –
2340 – @article{Ryckaert77,
2341 –        Author = {J.~P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen},
2342 –        Date-Modified = {2006-07-18 15:12:28 -0400},
2343 –        Journal = {Journal of Computational Physics},
2344 –        Pages = {327-341},
2345 –        Title = {Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: $\mbox{M}$olecular Dynamics of $n$-Alkanes},
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2347 –        Year = 1977}
2597  
2598   @inbook{Fowles99,
2599          Author = {G.~R. Fowles and G.~L. Cassiday},
# Line 2375 | Line 2624
2624  
2625   @article{Holz00,
2626          Author = {M. Holz and S.~R. Heil and A. Sacco},
2627 +        Date-Modified = {2006-08-06 14:07:16 -0400},
2628          Journal = {Phys. Chem. Chem. Phys.},
2629 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/ExperimentalWater/Holz_SelfDiffusionOfWaterFromNMR_00.pdf},
2630          Pages = {4740-4742},
2631 <        Title = {Temperature-dependent self-diffusion coefficients of water and six selected molecular liquids for calibration in accurate $^1${\sc h} {\sc nmr pfg} measurements},
2631 >        Title = {Temperature-dependent self-diffusion coefficients of water and six selected molecular liquids for calibration in accurate $^1$\uppercase{h nmr pfg} measurements},
2632          Volume = 2,
2633          Year = 2000}
2634  
# Line 2557 | Line 2808
2808          Address = {Dordrecht},
2809          Author = {H.~J.~C. Berendsen and J.~P.~M. Postma and W.~F. {van~Gunsteren} and J. Hermans},
2810          Booktitle = {Intermolecular Forces},
2811 +        Date-Modified = {2006-08-02 13:23:53 -0400},
2812          Editor = {B. Pullman},
2813 <        Pages = 331,
2813 >        Pages = {331-342},
2814          Publisher = {Reidel},
2815          Title = {Simple Point Charge Water},
2816          Year = 1981}
# Line 2620 | Line 2872
2872  
2873   @article{Onsager36,
2874          Author = {L. Onsager},
2875 +        Date-Modified = {2006-08-02 10:49:57 -0400},
2876          Journal = jacs,
2877 +        Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Onsager_electMoments_36.pdf},
2878          Pages = {1486-1493},
2879          Title = {Electric Moments of Molecules in Liquids},
2880          Volume = 58,
# Line 2653 | Line 2907
2907  
2908   @article{Vlot99,
2909          Author = {M.~J. Vlot and J. Huinink and J.~P. van~der~Eerden},
2910 <        Date-Modified = {2006-07-18 15:18:07 -0400},
2910 >        Date-Modified = {2006-08-26 23:57:49 -0400},
2911          Journal = jcp,
2912          Number = 1,
2913          Pages = {55-61},
2914 <        Title = {Free energy calculations on systems of rigid molecules: $\mbox{A}$n application to the $\mbox{TIP4P}$ model of $\mbox{H}_2$\mbox{O}$},
2914 >        Title = {Free energy calculations on systems of rigid molecules: \uppercase{A}n application to the \uppercase{TIP4P} model of \uppercase{H}$_2$\uppercase{O}},
2915          Volume = 110,
2916          Year = 1999}
2917  
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2945          Volume = 189,
2946          Year = 1992}
2947  
2694 – @article{Mezei92,
2695 –        Author = {M. Mezei},
2696 –        Journal = {J. Comput. Chem.},
2697 –        Pages = 651,
2698 –        Title = {Don't Remember},
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2700 –        Year = 1992}
2701 –
2702 – @article{Widom63,
2703 –        Author = {B. Widom},
2704 –        Journal = jcp,
2705 –        Pages = 2808,
2706 –        Title = {Particle insertion},
2707 –        Volume = 39,
2708 –        Year = 1963}
2709 –
2948   @article{Clancy94,
2949          Author = {L.~A. B\'{a}ez and P. Clancy},
2950          Journal = jcp,

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