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Comparing trunk/iceWater2/iceWater3.tex (file contents):
Revision 4234 by plouden, Mon Dec 8 17:43:24 2014 UTC vs.
Revision 4235 by plouden, Mon Dec 8 18:31:51 2014 UTC

# Line 56 | Line 56 | friction coefficient that the basal and pyramidal face
56   Decomposition of the molecular orientational time correlation function showed
57   different behavior for the short- and longer-time decay components approaching
58   normal to the interface. Lastly we show through calculation of the interfacial
59 < friction coefficient that the basal and pyramidal facets are more
59 > friction coefficient and dynamic water contact angle measurement
60 > that the basal and pyramidal facets are more
61   hydrophilic than the prismatic and secondary prismatic facets.}
62   \end{abstract}
63  
64   \keywords{ice|water|interface|contact angle|molecular dynamics}
65  
66 < \abbreviations{QLL, quasi liquid layer; MD, molecular dynamics}
66 > %\abbreviations{QLL, quasi liquid layer; MD, molecular dynamics}
67  
68   %\dropcap{I}n this article we study the evolution of ``almost-sharp'' fronts
69   %for the surface quasi-geostrophic equation. This 2-D active scalar
# Line 178 | Line 179 | water model in this study.
179   apparent independence of water model on interfacial width, we have chosen to use the rigid SPC/E
180   water model in this study.
181  
182 < \subsection{Pyramidal and secondary prismatic system construction}
182 > \subsection{Pyramidal and secondary prismatic ice/water interface construction}
183   To construct the pyramidal and secondary prismatic ice/water systems,
184   first a proton-ordered zero dipole crystal of ice-I$_\mathrm{h}$ with exposed strips
185   of H-atoms and lone pairs was constructed from Structure 6 of Hirsch
# Line 193 | Line 194 | systems were merged by carving out any liquid water mo
194   three times that of the ice block. Each of the ice slabs and water
195   boxes were independently equilibrated to 50K, and the resulting
196   systems were merged by carving out any liquid water molecules within 3
197 < \AA\ of any atoms in the ice slabs. For a more detailed explanation of
197 > \AA\ of any atoms in the ice slabs. Each of the combined ice/water
198 > systems were then equilibrated to 225K, which was found to be a stable
199 > temperature for each of the interfaces over a 5 ns simulation.
200 > For a more detailed explanation of
201   the ice/water systems construction, please refer to a previous
202   paper\cite{Louden13}. The resulting dimensions, number of ice, and liquid water molecules
203   contained in each of these systems can be seen in Table \ref{tab:method}.
# Line 201 | Line 205 | contained in each of these systems can be seen in Tabl
205   % Do we need to justify the sims at 225K?
206   % No crystal growth or shrinkage over 2 successive 1 ns NVT simulations for
207   %    either the pyramidal or sec. prismatic ice/water systems.
208 + To perform the shearing simulations, the velocity shearing and scaling
209 + varient of reverse nonequilibrium molecular dynamics (VSS-RNEMD) was
210 + conducted. This method performs a series of simultaneous velocity
211 + exchanges between two regions of the simulation cell, to
212 + simultaneously create a velocity and temperature gradient. The thermal
213 + gradient is necessary when performing shearing simulations as to
214 + prevent frictional heating from the shear from melting the
215 + interface. For more details on the VSS-RNEMD method please refer to a
216 + pervious paper\cite{Louden13}.
217  
218   The computational details performed here were equivalent to those reported
219 < in our previous publication\cite{Louden13}. The only changes made to the
220 < previously reported procedure were the following. VSS-RNEMD moves were
208 < attempted every 2 fs instead of every 50 fs. This was done to minimize
219 > in a previous publication\cite{Louden13}, with the following changes.
220 > VSS-RNEMD moves were attempted every 2 fs instead of every 50 fs. This was done to minimize
221   the magnitude of each individual VSS-RNEMD perturbation to the system.
210
222   All pyramidal simulations were performed under the canonical (NVT) ensamble
223 < except those
213 < during which statistics were accumulated for the orientational correlation
223 > except those during which configurations were accumulated for the orientational correlation
224   function, which were performed under the microcanonical (NVE) ensamble. All
225 < secondary prismatic
216 < simulations were performed under the NVE ensamble.
225 > secondary prismatic simulations were performed under the NVE ensamble.
226  
227   \subsection{Droplet simulations}
228 < Here, we will calculate the contact angle of a water droplet as it spreads
229 < across each of the four ice I$_\mathrm{h}$ crystal facets in order to
230 < determine the surface's relative hydrophilicites. The ice surfaces were
231 < oriented so that the desired facet was exposed to the positive z dimension.
232 < The sizes and number of molecules in each of the surfaces is given in Table
228 > To construct ice surfaces to perform water contact angle calculations
229 > on, ice crystals were created as described earlier (see Pyramidal and
230 > secondary prismatic ice/water interface construction). The crystals
231 > were then cut from the negative $z$ dimension, ensuring the remaining
232 > ice crystal was thicker in $z$ than the potential cutoff. The crystals
233 > were then replicated in $x$ and $y$ until a sufficiently large surface
234 > had been created. The sizes and number of molecules in each of the surfaces is given in Table
235   \ref{tab:ice_sheets}. Molecular restraints were applied to the center of mass
236   of the rigid bodies to prevent surface melting, however the molecules were
237 < allowed to reorient themselves freely. The water doplet to be placed on the
238 < surface contained 2048 SPC/E molecules, which has been found to produce
237 > allowed to reorient themselves freely. The water doplet contained 2048
238 > SPC/E molecules, which has been found to produce
239   agreement for the Young contact angle extrapolated to an infinite drop
240 < size\cite{Daub10}. The surfaces and droplet were equilibrated to 225 K, at
241 < which time the droplet was placed  3-5 \AA\ above the surface at 5 unique
242 < locations. Each simulation was 5 ns in length and conducted in the NVE
243 < ensemble.  
240 > size\cite{Daub10}. The surfaces and droplet were independently
241 > equilibrated to 225 K, at which time the droplet was placed  3-5 \AA\
242 > above the positive $z$ dimension of the surface at 5 unique
243 > locations. Each simulation was 5 ns in length and conducted in the NVE ensemble.  
244  
245  
246   \section{Results and discussion}

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