ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/group/trunk/iceiPaper/iceiPaper.tex
(Generate patch)

Comparing trunk/iceiPaper/iceiPaper.tex (file contents):
Revision 1542 by chrisfen, Thu Oct 7 20:39:44 2004 UTC vs.
Revision 1806 by chrisfen, Tue Nov 30 22:18:09 2004 UTC

# Line 201 | Line 201 | respectively.  It is clear from Fig. \ref{waterSpring}
201   where $K_\mathrm{v}$, $K_\mathrm{\theta}$, and $K_\mathrm{\omega}$ are
202   the spring constants restraining translational motion and deflection
203   of and rotation around the principle axis of the molecule
204 < respectively.  It is clear from Fig. \ref{waterSpring} that the values
205 < of $\theta$ range from $0$ to $\pi$, while $\omega$ ranges from
206 < $-\pi$ to $\pi$.  The partition function for a molecular crystal
204 > respectively.  These spring constants are typically calculated from
205 > the mean-square displacements of water molecules in an unrestrained
206 > ice crystal at 200 K.  For these studies, $K_\mathrm{r} = 4.29$ kcal
207 > mol$^{-1}$, $K_\theta\ = 13.88$ kcal mol$^{-1}$, and $K_\omega\ =
208 > 17.75$ kcal mol$^{-1}$.  It is clear from Fig. \ref{waterSpring} that
209 > the values of $\theta$ range from $0$ to $\pi$, while $\omega$ ranges
210 > from $-\pi$ to $\pi$.  The partition function for a molecular crystal
211   restrained in this fashion can be evaluated analytically, and the
212   Helmholtz Free Energy ({\it A}) is given by
213   \begin{eqnarray}
# Line 372 | Line 376 | liquid state. These results are actually not contrary
376   melting points that compare quite favorably with experiment. The
377   unfortunate aspect of this result is that this phase change occurs
378   between Ice-{\it i} and the liquid state rather than ice $I_h$ and the
379 < liquid state. These results are actually not contrary to previous
380 < studies in the literature. Earlier free energy studies of ice $I$
381 < using TIP4P predict a $T_m$ ranging from 214 to 238 K (differences
382 < being attributed to choice of interaction truncation and different
379 < ordered and disordered molecular
379 > liquid state. These results are actually not contrary to other
380 > studies. Studies of ice $I_h$ using TIP4P predict a $T_m$ ranging from
381 > 214 to 238 K (differences being attributed to choice of interaction
382 > truncation and different ordered and disordered molecular
383   arrangements).\cite{Vlot99,Gao00,Sanz04} If the presence of ice B and
384   Ice-{\it i} were omitted, a $T_m$ value around 210 K would be
385   predicted from this work. However, the $T_m$ from Ice-{\it i} is
386 < calculated at 265 K, significantly higher in temperature than the
387 < previous studies. Also of interest in these results is that SSD/E does
386 > calculated to be 265 K, indicating that these simulation based
387 > structures ought to be included in studies probing phase transitions
388 > with this model. Also of interest in these results is that SSD/E does
389   not exhibit a melting point at 1 atm, but it shows a sublimation point
390   at 355 K. This is due to the significant stability of Ice-{\it i} over
391   all other polymorphs for this particular model under these
# Line 394 | Line 398 | applying a longer cutoff.
398  
399   \begin{figure}
400   \includegraphics[width=\linewidth]{cutoffChange.eps}
401 < \caption{Free energy as a function of cutoff radius for (A) SSD/E, (B)
402 < TIP3P, and (C) SSD/RF with a reaction field. Both SSD/E and TIP3P show
403 < significant cutoff radius dependence of the free energy and appear to
404 < converge when moving to cutoffs greater than 12 \AA. Use of a reaction
405 < field with SSD/RF results in free energies that exhibit minimal cutoff
406 < radius dependence.}
401 > \caption{Free energy as a function of cutoff radius for SSD/E, TIP3P,
402 > SPC/E, SSD/RF with a reaction field, and the TIP3P and SPC/E models
403 > with an added Ewald correction term. Calculations performed without a
404 > long-range correction show noticable free energy dependence on the
405 > cutoff radius and show some degree of converge at large cutoff
406 > radii. Inclusion of a long-range correction reduces the cutoff radius
407 > dependence of the free energy for all the models. Data for ice I$_c$
408 > with TIP3P using 12 and 13.5 \AA\ cutoff radii were omitted being that
409 > the crystal was prone to distortion and melting at 200 K.}
410   \label{incCutoff}
411   \end{figure}
412  
# Line 407 | Line 414 | free energy of all the ice polymorphs for the SSD/E an
414   computationally efficient water models was done in order to evaluate
415   the trend in free energy values when moving to systems that do not
416   involve potential truncation. As seen in Fig. \ref{incCutoff}, the
417 < free energy of all the ice polymorphs for the SSD/E and TIP3P models
418 < show a substantial dependence on cutoff radius. In general, there is a
419 < narrowing of the free energy differences while moving to greater
420 < cutoff radii.  As the free energies for the polymorphs converge, the
421 < stability advantage that Ice-{\it i} exhibits is reduced; however, it
422 < remains the most stable polymorph for both of these models over the
423 < depicted range for both models. This narrowing trend is not
424 < significant in the case of SSD/RF, indicating that the free energies
425 < calculated with a reaction field present provide, at minimal
426 < computational cost, a more accurate picture of the free energy
417 > free energy of the ice polymorphs with water models lacking a
418 > long-range correction show a cutoff radius dependence. In general,
419 > there is a narrowing of the free energy differences while moving to
420 > greater cutoff radii.  As the free energies for the polymorphs
421 > converge, the stability advantage that Ice-{\it i} exhibits is
422 > reduced; however, it remains the most stable polymorph for both of
423 > these models over the depicted range for both models. This narrowing
424 > trend is not significant in the case of SSD/RF, indicating that the
425 > free energies calculated with a reaction field present provide, at
426 > minimal computational cost, a more accurate picture of the free energy
427   landscape in the absence of potential truncation.  Interestingly,
428 < increasing the cutoff radius a mere 1.5 \AA\ with the SSD/E model
429 < destabilizes the Ice-{\it i} polymorph enough that the liquid state is
430 < preferred under standard simulation conditions (298 K and 1
431 < atm). Thus, it is recommended that simulations using this model choose
432 < interaction truncation radii greater than 9 \AA. Considering this
433 < stabilization provided by smaller cutoffs, it is not surprising that
434 < crystallization into Ice-{\it i} was observed with SSD/E.  The choice
435 < of a 9 \AA\ cutoff in the previous simulations gives the Ice-{\it i}
436 < polymorph a greater than 1 kcal/mol lower free energy than the ice
437 < $I_\textrm{h}$ starting configurations.
428 > increasing the cutoff radius a mere 1.5
429 > \AA\ with the SSD/E model destabilizes the Ice-{\it i} polymorph
430 > enough that the liquid state is preferred under standard simulation
431 > conditions (298 K and 1 atm). Thus, it is recommended that simulations
432 > using this model choose interaction truncation radii greater than 9
433 > \AA. Considering this stabilization provided by smaller cutoffs, it is
434 > not surprising that crystallization into Ice-{\it i} was observed with
435 > SSD/E.  The choice of a 9 \AA\ cutoff in the previous simulations
436 > gives the Ice-{\it i} polymorph a greater than 1 kcal/mol lower free
437 > energy than the ice $I_\textrm{h}$ starting configurations.
438  
439   To further study the changes resulting to the inclusion of a
440   long-range interaction correction, the effect of an Ewald summation

Diff Legend

Removed lines
+ Added lines
< Changed lines
> Changed lines