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Revision 2133 by chrisfen, Thu Mar 24 19:35:08 2005 UTC

# Line 1 | Line 1
1   %\documentclass[prb,aps,twocolumn,tabularx]{revtex4}
2 < \documentclass[11pt]{article}
2 > \documentclass[12pt]{article}
3   \usepackage{endfloat}
4   \usepackage{amsmath}
5   \usepackage{epsf}
6 < \usepackage{berkeley}
6 > \usepackage{times}
7 > \usepackage{mathptm}
8   \usepackage{setspace}
9   \usepackage{tabularx}
10   \usepackage{graphicx}
# Line 20 | Line 21 | exhibits greater stability than Ice $I_h$}
21   \begin{document}
22  
23   \title{Computational free energy studies of a new ice polymorph which
24 < exhibits greater stability than Ice $I_h$}
24 > exhibits greater stability than Ice I$_h$}
25  
26   \author{Christopher J. Fennell and J. Daniel Gezelter \\
27   Department of Chemistry and Biochemistry\\
# Line 95 | Line 96 | hydrogen bonds are not as linear as those observed in
96   tetramers form a crystal structure similar in appearance to a recent
97   two-dimensional surface tessellation simulated on silica.\cite{Yang04}
98   As expected in an ice crystal constructed of water tetramers, the
99 < hydrogen bonds are not as linear as those observed in ice $I_h$,
99 > hydrogen bonds are not as linear as those observed in ice I$_h$,
100   however the interlocking of these subunits appears to provide
101   significant stabilization to the overall crystal.  The arrangement of
102   these tetramers results in octagonal cavities that are typically
103   greater than 6.3 \AA\ in diameter (Fig. \ref{iCrystal}).  This open
104   structure leads to crystals that are typically 0.07 g/cm$^3$ less
105 < dense than ice $I_h$.
105 > dense than ice I$_h$.
106  
107   \begin{figure}
108   \centering
# Line 118 | Line 119 | leads to a polymorph that is less dense than ice $I_h$
119   \includegraphics[width=\linewidth]{orderedIcei.eps}
120   \caption{A rendering of a proton ordered crystal of Ice-{\it i} looking
121   down the (001) crystal face.  The presence of large octagonal pores
122 < leads to a polymorph that is less dense than ice $I_h$.}
122 > leads to a polymorph that is less dense than ice I$_h$.}
123   \label{iCrystal}
124   \end{figure}
125  
# Line 131 | Line 132 | $I_c$ and ice $I_h$ (the common low density ice polymo
132   contributions to the overall free energy.  To address this issue, we
133   have calculated the absolute free energy of this crystal using
134   thermodynamic integration and compared it to the free energies of ice
135 < $I_c$ and ice $I_h$ (the common low density ice polymorphs) and ice B
135 > I$_c$ and ice I$_h$ (the common low density ice polymorphs) and ice B
136   (a higher density, but very stable crystal structure observed by
137   B\`{a}ez and Clancy in free energy studies of SPC/E).\cite{Baez95b}
138   This work includes results for the water model from which Ice-{\it i}
# Line 191 | Line 192 | ice crystal at 200 K.  For these studies, $K_\mathrm{r
192   of and rotation around the principle axis of the molecule
193   respectively.  These spring constants are typically calculated from
194   the mean-square displacements of water molecules in an unrestrained
195 < ice crystal at 200 K.  For these studies, $K_\mathrm{r} = 4.29$ kcal
196 < mol$^{-1}$, $K_\theta\ = 13.88$ kcal mol$^{-1}$, and $K_\omega\ =
197 < 17.75$ kcal mol$^{-1}$.  It is clear from Fig. \ref{waterSpring} that
198 < the values of $\theta$ range from $0$ to $\pi$, while $\omega$ ranges
199 < from $-\pi$ to $\pi$.  The partition function for a molecular crystal
200 < restrained in this fashion can be evaluated analytically, and the
201 < Helmholtz Free Energy ({\it A}) is given by
195 > ice crystal at 200 K.  For these studies, $K_\mathrm{v} = 4.29$ kcal
196 > mol$^{-1}$ \AA$^{-2}$, $K_\theta\ = 13.88$ kcal mol$^{-1}$ rad$^{-2}$,
197 > and $K_\omega\ = 17.75$ kcal mol$^{-1}$ rad$^{-2}$.  It is clear from
198 > Fig. \ref{waterSpring} that the values of $\theta$ range from $0$ to
199 > $\pi$, while $\omega$ ranges from $-\pi$ to $\pi$.  The partition
200 > function for a molecular crystal restrained in this fashion can be
201 > evaluated analytically, and the Helmholtz Free Energy ({\it A}) is
202 > given by
203   \begin{eqnarray}
204   A = E_m\ -\ kT\ln \left (\frac{kT}{h\nu}\right )^3&-&kT\ln \left
205   [\pi^\frac{1}{2}\left (\frac{8\pi^2I_\mathrm{A}kT}{h^2}\right
# Line 259 | Line 261 | density polymorphs ($I_h$, $I_c$, and Ice-{\it i} or I
261   \section{Results and Discussion}
262  
263   The calculated free energies of proton-ordered variants of three low
264 < density polymorphs ($I_h$, $I_c$, and Ice-{\it i} or Ice-{\it
264 > density polymorphs (I$_h$, I$_c$, and Ice-{\it i} or Ice-{\it
265   i}$^\prime$) and the stable higher density ice B are listed in Table
266   \ref{freeEnergy}.  Ice B was included because it has been
267   shown to be a minimum free energy structure for SPC/E at ambient
# Line 274 | Line 276 | It is interesting to note that ice $I_h$ (and ice $I_c
276   All other models have similar structure, although the crossing points
277   between the phases move to different temperatures and pressures as
278   indicated from the transition temperatures in Table \ref{freeEnergy}.
279 < It is interesting to note that ice $I_h$ (and ice $I_c$ for that
279 > It is interesting to note that ice I$_h$ (and ice I$_c$ for that
280   matter) do not appear in any of the phase diagrams for any of the
281   models.  For purposes of this study, ice B is representative of the
282   dense ice polymorphs.  A recent study by Sanz {\it et al.} provides
# Line 292 | Line 294 | Water Model & $I_h$ & $I_c$ & B & Ice-{\it i} & Ice-{\
294   Kelvin.  Calculated error of the final digits is in parentheses.}
295   \begin{tabular}{lccccccc}
296   \hline
297 < Water Model & $I_h$ & $I_c$ & B & Ice-{\it i} & Ice-{\it i}$^\prime$ & $T_m$ (*$T_s$) & $T_b$\\
297 > Water Model & I$_h$ & I$_c$ & B & Ice-{\it i} & Ice-{\it i}$^\prime$ & $T_m$ (*$T_s$) & $T_b$\\
298   \hline
299   TIP3P & -11.41(2) & -11.23(3) & -11.82(3) & -12.30(3) & - & 269(4) & 357(2)\\
300   TIP4P & -11.84(3) & -12.04(2) & -12.08(3) & - & -12.33(3) & 266(5) & 354(2)\\
301   TIP5P & -11.85(3) & -11.86(2) & -11.96(2) & - & -12.29(2) & 271(4) & 337(2)\\
302   SPC/E & -12.87(2) & -13.05(2) & -13.26(3) & - & -13.55(2) & 296(3) & 396(2)\\
303   SSD/E & -11.27(2) & -11.19(4) & -12.09(2) & -12.54(2) & - & *355(2) & -\\
304 < SSD/RF & -11.51(2) & -11.47(2) & -12.08(3) & -12.29(2) & - & 278(4) & 349(2)\\
304 > SSD/RF & -11.96(2) & -11.60(2) & -12.53(3) & -12.79(2) & - & 287(4) & 382(2)\\
305   \end{tabular}
306   \label{freeEnergy}
307   \end{center}
# Line 319 | Line 321 | Ice-{\it i} and the liquid state rather than ice $I_h$
321   Most of the water models have melting points that compare quite
322   favorably with the experimental value of 273 K.  The unfortunate
323   aspect of this result is that this phase change occurs between
324 < Ice-{\it i} and the liquid state rather than ice $I_h$ and the liquid
324 > Ice-{\it i} and the liquid state rather than ice I$_h$ and the liquid
325   state.  These results do not contradict other studies.  Studies of ice
326 < $I_h$ using TIP4P predict a $T_m$ ranging from 214 to 238 K
326 > I$_h$ using TIP4P predict a $T_m$ ranging from 214 to 238 K
327   (differences being attributed to choice of interaction truncation and
328   different ordered and disordered molecular
329   arrangements).\cite{Vlot99,Gao00,Sanz04} If the presence of ice B and
# Line 390 | Line 392 | In this report, thermodynamic integration was used to
392  
393   \section{Conclusions}
394  
395 < In this report, thermodynamic integration was used to determine the
396 < absolute free energies of several ice polymorphs.  Of the studied
397 < crystal forms, Ice-{\it i} was observed to be the stable crystalline
398 < state for {\it all} the water models when using a 9.0 \AA\
399 < intermolecular interaction cutoff.  Through investigation of possible
400 < interaction truncation methods, the free energy was shown to be
401 < partially dependent on simulation conditions; however, Ice-{\it i} was
402 < still observered to be a stable polymorph of the studied water models.
395 > In this work, thermodynamic integration was used to determine the
396 > absolute free energies of several ice polymorphs.  The new polymorph,
397 > Ice-{\it i} was observed to be the stable crystalline state for {\it
398 > all} the water models when using a 9.0 \AA\ cutoff.  However, the free
399 > energy partially depends on simulation conditions (particularly on the
400 > choice of long range correction method). Regardless, Ice-{\it i} was
401 > still observered to be a stable polymorph for all of the studied water
402 > models.
403  
404   So what is the preferred solid polymorph for simulated water?  As
405   indicated above, the answer appears to be dependent both on the
# Line 408 | Line 410 | lead to insight about important behavior of others.  I
410   pressure conditions, as was done with SSD/E, would aid in the
411   identification of their respective preferred structures.  This work,
412   however, helps illustrate how studies involving one specific model can
413 < lead to insight about important behavior of others.  In general, the
412 < above results support the finding that the Ice-{\it i} polymorph is a
413 < stable crystal structure that should be considered when studying the
414 < phase behavior of water models.
413 > lead to insight about important behavior of others.
414  
415   We also note that none of the water models used in this study are
416   polarizable or flexible models.  It is entirely possible that the
417   polarizability of real water makes Ice-{\it i} substantially less
418 < stable than ice $I_h$.  However, the calculations presented above seem
418 > stable than ice I$_h$.  However, the calculations presented above seem
419   interesting enough to communicate before the role of polarizability
420   (or flexibility) has been thoroughly investigated.
421  
# Line 431 | Line 430 | non-polar molecules.  For experimental comparison purp
430   situation for possible observation. These include the negative
431   pressure or stretched solid regime, small clusters in vacuum
432   deposition environments, and in clathrate structures involving small
433 < non-polar molecules.  For experimental comparison purposes, example
434 < $g_{OO}(r)$ and $S(\vec{q})$ plots were generated for the two Ice-{\it
435 < i} variants (along with example ice $I_h$ and $I_c$ plots) at 77K, and
436 < they are shown in figures \ref{fig:gofr} and \ref{fig:sofq}
437 < respectively.
433 > non-polar molecules.  For the purpose of comparison with experimental
434 > results, we have calculated the oxygen-oxygen pair correlation
435 > function, $g_{OO}(r)$, and the structure factor, $S(\vec{q})$ for the
436 > two Ice-{\it i} variants (along with example ice I$_h$ and I$_c$
437 > plots) at 77K, and they are shown in figures \ref{fig:gofr} and
438 > \ref{fig:sofq} respectively.  It is interesting to note that the
439 > structure factors for Ice-{\it i}$^\prime$ and Ice-I$_c$ are quite similar.
440 > The primary differences are small peaks at 1.125, 2.29, and 2.53
441 > \AA${-1}$, so particular attention to these regions would be needed
442 > to identify the new {\it i}$^\prime$ variant from the I$_{c}$ variant.
443  
444   \begin{figure}
445   \centering
446   \includegraphics[width=\linewidth]{iceGofr.eps}
447 < \caption{Radial distribution functions of ice $I_h$, $I_c$, and
447 > \caption{Radial distribution functions of ice I$_h$, I$_c$, and
448   Ice-{\it i} calculated from from simulations of the SSD/RF water model
449   at 77 K.  The Ice-{\it i} distribution function was obtained from
450   simulations composed of TIP4P water.}
# Line 450 | Line 454 | simulations composed of TIP4P water.}
454   \begin{figure}
455   \centering
456   \includegraphics[width=\linewidth]{sofq.eps}
457 < \caption{Predicted structure factors for ice $I_h$, $I_c$, Ice-{\it i},
457 > \caption{Predicted structure factors for ice I$_h$, I$_c$, Ice-{\it i},
458   and Ice-{\it i}$^\prime$ at 77 K.  The raw structure factors have
459   been convoluted with a gaussian instrument function (0.075 \AA$^{-1}$
460   width) to compensate for the trunction effects in our finite size
# Line 466 | Line 470 | Bunch-of-Boxes (B.o.B) computer cluster (NSF grant DMR
470  
471   \newpage
472  
473 < \bibliographystyle{jcp}
473 > \bibliographystyle{achemso}
474   \bibliography{iceiPaper}
475  
476  

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