| 4 |
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\usepackage{endfloat} |
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|
\usepackage{amsmath,bm} |
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|
\usepackage{amssymb} |
| 7 |
– |
\usepackage{epsf} |
| 7 |
|
\usepackage{times} |
| 8 |
|
\usepackage{mathptmx} |
| 9 |
|
\usepackage{setspace} |
| 631 |
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|
| 632 |
|
\begin{figure} |
| 633 |
|
\centering |
| 634 |
< |
\includegraphics[width=\linewidth]{temperature.eps} |
| 634 |
> |
\includegraphics[width=\linewidth]{temperature.pdf} |
| 635 |
|
\caption[Plot of Temperature Fluctuation Versus Time]{Plot of |
| 636 |
|
temperature fluctuation versus time.} \label{langevin:temperature} |
| 637 |
|
\end{figure} |
| 675 |
|
|
| 676 |
|
\begin{figure} |
| 677 |
|
\centering |
| 678 |
< |
\includegraphics[width=\linewidth]{roughShell.eps} |
| 678 |
> |
\includegraphics[width=\linewidth]{roughShell.pdf} |
| 679 |
|
\caption[Rough shell model for banana shaped molecule]{Rough shell |
| 680 |
|
model for banana shaped molecule.} \label{langevin:roughShell} |
| 681 |
|
\end{figure} |
| 682 |
|
|
| 683 |
|
\begin{figure} |
| 684 |
|
\centering |
| 685 |
< |
\includegraphics[width=\linewidth]{twoBanana.eps} |
| 685 |
> |
\includegraphics[width=\linewidth]{twoBanana.pdf} |
| 686 |
|
\caption[Snapshot from Simulation of Two Banana Shaped Molecules and |
| 687 |
|
256 Pentane Molecules]{Snapshot from simulation of two Banana shaped |
| 688 |
|
molecules and 256 pentane molecules.} \label{langevin:twoBanana} |
| 690 |
|
|
| 691 |
|
\begin{figure} |
| 692 |
|
\centering |
| 693 |
< |
\includegraphics[width=\linewidth]{vacf.eps} |
| 693 |
> |
\includegraphics[width=\linewidth]{vacf.pdf} |
| 694 |
|
\caption[Plots of Velocity Auto-correlation Functions]{Velocity |
| 695 |
|
auto-correlation functions of NVE (explicit solvent) in blue and |
| 696 |
|
Langevin dynamics (implicit solvent) in red.} \label{langevin:vacf} |
| 698 |
|
|
| 699 |
|
\begin{figure} |
| 700 |
|
\centering |
| 701 |
< |
\includegraphics[width=\linewidth]{uacf.eps} |
| 701 |
> |
\includegraphics[width=\linewidth]{uacf.pdf} |
| 702 |
|
\caption[Auto-correlation functions of the principle axis of the |
| 703 |
|
middle GB particle]{Auto-correlation functions of the principle axis |
| 704 |
|
of the middle GB particle of NVE (blue) and Langevin dynamics |
