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Revision 3701 by kstocke1, Wed Nov 17 20:59:25 2010 UTC vs.
Revision 3713 by kstocke1, Wed Jan 12 22:03:36 2011 UTC

# Line 431 | Line 431 | The region we used is a spherical volume of 10 \AA\ ra
431   )_{T}.
432   \label{eq:BMN}
433   \end{equation}
434 < The region we used is a spherical volume of 10 \AA\ radius centered in
434 > The region we used is a spherical volume of 20 \AA\ radius centered in
435   the middle of the cluster. $N$ is the average number of molecules
436   found within this region throughout a given simulation. The geometry
437   and size of the region is arbitrary, and any bulk-like portion of the
# Line 518 | Line 518 | the total surface area of the cluter exposed to the ba
518   temperature respond to the Langevin Hull for nanoparticles that were
519   initialized far from the target pressure and temperature.  As
520   expected, the rate at which thermal equilibrium is achieved depends on
521 < the total surface area of the cluter exposed to the bath as well as
521 > the total surface area of the cluster exposed to the bath as well as
522   the bath viscosity.  Pressure that is applied suddenly to a cluster
523   can excite breathing vibrations, but these rapidly damp out (on time
524   scales of 30 -- 50 ps).
# Line 613 | Line 613 | the water molecules on the surfaces of the clusterss w
613   hydrophobic boundary, or orientational or radial constraints.
614   Therefore, the orientational correlations of the molecules in water
615   clusters are of particular interest in testing this method.  Ideally,
616 < the water molecules on the surfaces of the clusterss will have enough
616 > the water molecules on the surfaces of the clusters will have enough
617   mobility into and out of the center of the cluster to maintain
618   bulk-like orientational distribution in the absence of orientational
619   and radial constraints.  However, since the number of hydrogen bonding
# Line 655 | Line 655 | forming a dangling hydrogen bond acceptor site.
655   orientations. Molecules included in the convex hull show a slight
656   preference for values of $\cos{\theta} < 0.$ These values correspond
657   to molecules with oxygen directed toward the exterior of the cluster,
658 < forming a dangling hydrogen bond acceptor site.
658 > forming dangling hydrogen bond acceptor sites.
659  
660 < The orientational preference exhibited by liquid phase hull molecules in the Langevin Hull is significantly weaker than the preference caused by an explicit hydrophobic bounding potential.  Additionally, the Langevin Hull does not require that the orientation of any molecules be fixed in order to maintain bulk-like structure, even at the cluster surface.
660 > The orientational preference exhibited by water molecules on the hull
661 > is significantly weaker than the preference caused by an explicit
662 > hydrophobic bounding potential.  Additionally, the Langevin Hull does
663 > not require that the orientation of any molecules be fixed in order to
664 > maintain bulk-like structure, even near the cluster surface.
665  
666 < Previous molecular dynamics simulations
667 < of SPC/E water using periodic boundary conditions have shown that molecules on the liquid side of the liquid/vapor interface favor a similar orientation where oxygen is directed away from the bulk.\cite{Taylor1996} These simulations had both a liquid phase and a well-defined vapor phase in equilibrium and showed that vapor molecules generally had one hydrogen protruding from the surface, forming a dangling hydrogen bond donor. Our water cluster simulations do not have a true lasting vapor phase, but rather a few transient molecules that leave the liquid droplet. Thus while we are unable to comment on the orientational preference of vapor phase molecules in a Langevin Hull simulation, we achieve good agreement for the orientation of liquid phase molecules at the interface.
666 > Previous molecular dynamics simulations of SPC/E liquid / vapor
667 > interfaces using periodic boundary conditions have shown that
668 > molecules on the liquid side of interface favor a similar orientation
669 > where oxygen is directed away from the bulk.\cite{Taylor1996} These
670 > simulations had well-defined liquid and vapor phase regions
671 > equilibrium and it was observed that {\it vapor} molecules generally
672 > had one hydrogen protruding from the surface, forming a dangling
673 > hydrogen bond donor. Our water clusters do not have a true vapor
674 > region, but rather a few transient molecules that leave the liquid
675 > droplet (and which return to the droplet relatively quickly).
676 > Although we cannot obtain an orientational preference of vapor phase
677 > molecules in a Langevin Hull simulation, but we do agree with previous
678 > estimates of the orientation of {\it liquid phase} molecules at the
679 > interface.
680  
681   \subsection{Heterogeneous nanoparticle / water mixtures}
682  
683   To further test the method, we simulated gold nanopartices ($r = 18$
684 < \AA) solvated by explicit SPC/E water clusters using the Langevin
685 < Hull.  This was done at pressures of 1, 2, 5, 10, 20, 50, 100 and 200 atm
686 < in order to observe the effects of pressure on the ordering of water
687 < ordering at the surface.  In Fig. \ref{fig:RhoR} we show the density
688 < of water adjacent to the surface and
689 < the density of gold at the surface as a function of pressure.
684 > \AA) solvated by explicit SPC/E water clusters using a model for the
685 > gold / water interactions that has been used by Dou {\it et. al.} for
686 > investigating the separation of water films near hot metal
687 > surfaces.\cite{ISI:000167766600035} The Langevin Hull was used to
688 > sample pressures of 1, 2, 5, 10, 20, 50, 100 and 200 atm, while all
689 > simulations were done at a temperature of 300 K.   At these
690 > temperatures and pressures, there is no observed separation of the
691 > water film from the surface.  
692  
693 < Higher applied pressures de-structure the outermost layer of the gold nanoparticle and the water at the metal/water interface. Increased pressure shows more overlap of the gold and water densities, indicating a less well-defined interfacial surface.
693 > In Fig. \ref{fig:RhoR} we show the density of water and gold as a
694 > function of the distance from the center of the nanoparticle.  Higher
695 > applied pressures appear to destroy structural correlations in the
696 > outermost monolayer of the gold nanoparticle as well as in the water
697 > at the near the metal / water interface.  Simulations at increased
698 > pressures exhibit significant overlap of the gold and water densities,
699 > indicating a less well-defined interfacial surface.
700  
701   \begin{figure}
702   \includegraphics[width=\linewidth]{RhoR}
703 < \caption{Densities of gold and water at the nanoparticle surface. Higher applied pressures de-structure both the gold nanoparticle surface and water at the metal/water interface.}
703 > \caption{Density profiles of gold and water at the nanoparticle
704 >  surface. Each curve has been normalized by the average density in
705 >  the bulk-like region available to the corresponding material.  Higher applied pressures
706 >  de-structure both the gold nanoparticle surface and water at the
707 >  metal/water interface.}
708   \label{fig:RhoR}
709   \end{figure}
710  
711 < At higher pressures, problems with the gold - water interaction
712 < potential became apparent.  The model we are using (due to Spohr) was
713 < intended for relatively low pressures; it utilizes both shifted Morse
714 < and repulsive Morse potentials to model the Au/O and Au/H
715 < interactions, respectively.  The repulsive wall of the Morse potential
716 < does not diverge quickly enough at short distances to prevent water
717 < from diffusing into the center of the gold nanoparticles.  This
718 < behavior is likely not a realistic description of the real physics of
719 < the situation.  A better model of the gold-water adsorption behavior
720 < appears to require harder repulsive walls to prevent this behavior.
711 > At even higher pressures (500 atm and above), problems with the metal
712 > - water interaction potential became quite clear.  The model we are
713 > using appears to have been parameterized for relatively low pressures;
714 > it utilizes both shifted Morse and repulsive Morse potentials to model
715 > the Au/O and Au/H interactions, respectively.  The repulsive wall of
716 > the Morse potential does not diverge quickly enough at short distances
717 > to prevent water from diffusing into the center of the gold
718 > nanoparticles.  This behavior is likely not a realistic description of
719 > the real physics of the situation.  A better model of the gold-water
720 > adsorption behavior appears to require harder repulsive walls to
721 > prevent this behavior.
722  
723   \section{Discussion}
724   \label{sec:discussion}

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