added the capability to specify a start and end frame for cosCorr and GofR
added the cos correlation function
got the GofR code working, and slimmed down the memory usage.
finished working on the command line options, and started working on the GofR added the GofR header, and moved the strructure definitions to the madProps.h
made a header directory, and fixed the Makefile to work with it the new header dir